Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00756

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_00754 and MPMX19_00755 are separated by 9 nucleotidesMPMX19_00755 and MPMX19_00756 are separated by 59 nucleotidesMPMX19_00756 and MPMX19_00757 are separated by 59 nucleotides MPMX19_00754: MPMX19_00754 - hypothetical protein, at 770,683 to 771,405 _00754 MPMX19_00755: MPMX19_00755 - hypothetical protein, at 771,415 to 771,774 _00755 MPMX19_00756: MPMX19_00756 - hypothetical protein, at 771,834 to 772,088 _00756 MPMX19_00757: MPMX19_00757 - Carbamoyl-phosphate synthase small chain, at 772,148 to 773,320 _00757 Position (kb) 771 772 773Strain fitness (log2 ratio) -3 -2 -1 0 1at 770.923 kb on + strand, within MPMX19_00754at 770.977 kb on + strand, within MPMX19_00754at 770.977 kb on + strand, within MPMX19_00754at 770.977 kb on + strand, within MPMX19_00754at 770.977 kb on + strand, within MPMX19_00754at 770.977 kb on + strand, within MPMX19_00754at 770.977 kb on + strand, within MPMX19_00754at 770.977 kb on + strand, within MPMX19_00754at 770.977 kb on + strand, within MPMX19_00754at 770.977 kb on + strand, within MPMX19_00754at 770.977 kb on + strand, within MPMX19_00754at 770.977 kb on + strand, within MPMX19_00754at 770.977 kb on + strand, within MPMX19_00754at 770.977 kb on + strand, within MPMX19_00754at 770.977 kb on + strand, within MPMX19_00754at 770.977 kb on + strand, within MPMX19_00754at 770.977 kb on + strand, within MPMX19_00754at 770.977 kb on + strand, within MPMX19_00754at 770.977 kb on + strand, within MPMX19_00754at 770.977 kb on + strand, within MPMX19_00754at 770.977 kb on + strand, within MPMX19_00754at 770.977 kb on + strand, within MPMX19_00754at 770.978 kb on - strand, within MPMX19_00754at 770.978 kb on - strand, within MPMX19_00754at 770.978 kb on - strand, within MPMX19_00754at 770.978 kb on - strand, within MPMX19_00754at 770.978 kb on - strand, within MPMX19_00754at 770.978 kb on - strand, within MPMX19_00754at 770.978 kb on - strand, within MPMX19_00754at 770.978 kb on - strand, within MPMX19_00754at 770.978 kb on - strand, within MPMX19_00754at 770.978 kb on - strand, within MPMX19_00754at 770.978 kb on - strand, within MPMX19_00754at 770.978 kb on - strand, within MPMX19_00754at 770.978 kb on - strand, within MPMX19_00754at 770.978 kb on - strand, within MPMX19_00754at 770.978 kb on - strand, within MPMX19_00754at 770.978 kb on - strand, within MPMX19_00754at 770.978 kb on - strand, within MPMX19_00754at 770.978 kb on - strand, within MPMX19_00754at 770.978 kb on - strand, within MPMX19_00754at 770.978 kb on - strand, within MPMX19_00754at 770.978 kb on - strand, within MPMX19_00754at 770.978 kb on - strand, within MPMX19_00754at 771.169 kb on - strand, within MPMX19_00754at 771.319 kb on + strand, within MPMX19_00754at 771.319 kb on + strand, within MPMX19_00754at 771.319 kb on + strand, within MPMX19_00754at 771.319 kb on + strand, within MPMX19_00754at 771.319 kb on + strand, within MPMX19_00754at 771.319 kb on + strand, within MPMX19_00754at 771.319 kb on + strand, within MPMX19_00754at 771.319 kb on + strand, within MPMX19_00754at 771.319 kb on + strand, within MPMX19_00754at 771.320 kb on - strand, within MPMX19_00754at 771.320 kb on - strand, within MPMX19_00754at 771.320 kb on - strand, within MPMX19_00754at 771.320 kb on - strand, within MPMX19_00754at 771.320 kb on - strand, within MPMX19_00754at 771.320 kb on - strand, within MPMX19_00754at 771.320 kb on - strand, within MPMX19_00754at 771.361 kb on + strandat 771.361 kb on + strandat 771.361 kb on + strandat 771.361 kb on + strandat 771.361 kb on + strandat 771.361 kb on + strandat 771.361 kb on + strandat 771.361 kb on + strandat 771.361 kb on + strandat 771.361 kb on + strandat 771.361 kb on + strandat 771.361 kb on + strandat 771.362 kb on - strandat 771.362 kb on - strandat 771.362 kb on - strandat 771.362 kb on - strandat 771.362 kb on - strandat 771.362 kb on - strandat 771.362 kb on - strandat 771.362 kb on - strandat 771.362 kb on - strandat 771.362 kb on - strandat 771.362 kb on - strandat 771.638 kb on + strand, within MPMX19_00755at 771.638 kb on + strand, within MPMX19_00755at 771.638 kb on + strand, within MPMX19_00755at 771.638 kb on + strand, within MPMX19_00755at 771.638 kb on + strand, within MPMX19_00755at 771.638 kb on + strand, within MPMX19_00755at 771.639 kb on - strand, within MPMX19_00755at 771.639 kb on - strand, within MPMX19_00755at 771.639 kb on - strand, within MPMX19_00755at 771.639 kb on - strand, within MPMX19_00755at 771.639 kb on - strand, within MPMX19_00755at 771.639 kb on - strand, within MPMX19_00755at 771.639 kb on - strand, within MPMX19_00755at 771.639 kb on - strand, within MPMX19_00755at 771.833 kb on + strandat 771.833 kb on + strandat 771.834 kb on - strandat 771.960 kb on + strand, within MPMX19_00756at 771.960 kb on + strand, within MPMX19_00756at 772.008 kb on + strand, within MPMX19_00756at 772.008 kb on + strand, within MPMX19_00756at 772.008 kb on + strand, within MPMX19_00756at 772.008 kb on + strand, within MPMX19_00756at 772.008 kb on + strand, within MPMX19_00756at 772.008 kb on + strand, within MPMX19_00756at 772.008 kb on + strand, within MPMX19_00756at 772.008 kb on + strand, within MPMX19_00756at 772.008 kb on + strand, within MPMX19_00756at 772.008 kb on + strand, within MPMX19_00756at 772.008 kb on + strand, within MPMX19_00756at 772.008 kb on + strand, within MPMX19_00756at 772.008 kb on + strand, within MPMX19_00756at 772.008 kb on + strand, within MPMX19_00756at 772.008 kb on + strand, within MPMX19_00756at 772.008 kb on + strand, within MPMX19_00756at 772.008 kb on + strand, within MPMX19_00756at 772.008 kb on + strand, within MPMX19_00756at 772.008 kb on + strand, within MPMX19_00756at 772.008 kb on + strand, within MPMX19_00756at 772.008 kb on + strand, within MPMX19_00756at 772.009 kb on - strand, within MPMX19_00756at 772.009 kb on - strand, within MPMX19_00756at 772.009 kb on - strand, within MPMX19_00756at 772.009 kb on - strand, within MPMX19_00756at 772.009 kb on - strand, within MPMX19_00756at 772.009 kb on - strand, within MPMX19_00756at 772.009 kb on - strand, within MPMX19_00756at 772.009 kb on - strand, within MPMX19_00756at 772.009 kb on - strand, within MPMX19_00756at 772.009 kb on - strand, within MPMX19_00756at 772.009 kb on - strand, within MPMX19_00756at 772.009 kb on - strand, within MPMX19_00756at 772.009 kb on - strand, within MPMX19_00756at 772.009 kb on - strand, within MPMX19_00756at 772.009 kb on - strand, within MPMX19_00756at 772.027 kb on + strand, within MPMX19_00756at 772.028 kb on - strand, within MPMX19_00756at 772.028 kb on - strand, within MPMX19_00756at 772.076 kb on + strandat 772.077 kb on - strandat 772.077 kb on - strandat 772.077 kb on - strandat 772.086 kb on + strandat 772.087 kb on - strandat 772.087 kb on - strandat 772.087 kb on - strandat 772.089 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
770,923 + MPMX19_00754 0.33 -0.9
770,977 + MPMX19_00754 0.41 -1.4
770,977 + MPMX19_00754 0.41 -1.7
770,977 + MPMX19_00754 0.41 -0.0
770,977 + MPMX19_00754 0.41 -1.6
770,977 + MPMX19_00754 0.41 -0.7
770,977 + MPMX19_00754 0.41 -1.4
770,977 + MPMX19_00754 0.41 -2.0
770,977 + MPMX19_00754 0.41 +0.3
770,977 + MPMX19_00754 0.41 -2.1
770,977 + MPMX19_00754 0.41 -0.6
770,977 + MPMX19_00754 0.41 -1.1
770,977 + MPMX19_00754 0.41 +0.3
770,977 + MPMX19_00754 0.41 -1.0
770,977 + MPMX19_00754 0.41 -0.4
770,977 + MPMX19_00754 0.41 -0.7
770,977 + MPMX19_00754 0.41 -1.9
770,977 + MPMX19_00754 0.41 +0.5
770,977 + MPMX19_00754 0.41 -0.6
770,977 + MPMX19_00754 0.41 +0.4
770,977 + MPMX19_00754 0.41 -2.3
770,977 + MPMX19_00754 0.41 -0.1
770,978 - MPMX19_00754 0.41 -0.8
770,978 - MPMX19_00754 0.41 -1.0
770,978 - MPMX19_00754 0.41 -0.1
770,978 - MPMX19_00754 0.41 -0.7
770,978 - MPMX19_00754 0.41 +0.5
770,978 - MPMX19_00754 0.41 -0.8
770,978 - MPMX19_00754 0.41 +0.3
770,978 - MPMX19_00754 0.41 +1.0
770,978 - MPMX19_00754 0.41 -1.1
770,978 - MPMX19_00754 0.41 +1.5
770,978 - MPMX19_00754 0.41 -1.4
770,978 - MPMX19_00754 0.41 -0.5
770,978 - MPMX19_00754 0.41 -0.9
770,978 - MPMX19_00754 0.41 +0.7
770,978 - MPMX19_00754 0.41 -0.8
770,978 - MPMX19_00754 0.41 -0.9
770,978 - MPMX19_00754 0.41 +0.4
770,978 - MPMX19_00754 0.41 -0.6
770,978 - MPMX19_00754 0.41 -1.1
770,978 - MPMX19_00754 0.41 -1.1
770,978 - MPMX19_00754 0.41 -0.3
770,978 - MPMX19_00754 0.41 -1.1
771,169 - MPMX19_00754 0.67 -1.7
771,319 + MPMX19_00754 0.88 +0.3
771,319 + MPMX19_00754 0.88 -0.1
771,319 + MPMX19_00754 0.88 -0.8
771,319 + MPMX19_00754 0.88 -0.6
771,319 + MPMX19_00754 0.88 -1.3
771,319 + MPMX19_00754 0.88 -1.1
771,319 + MPMX19_00754 0.88 -0.3
771,319 + MPMX19_00754 0.88 +1.2
771,319 + MPMX19_00754 0.88 -1.1
771,320 - MPMX19_00754 0.88 -1.0
771,320 - MPMX19_00754 0.88 +1.1
771,320 - MPMX19_00754 0.88 +0.1
771,320 - MPMX19_00754 0.88 +0.3
771,320 - MPMX19_00754 0.88 +0.4
771,320 - MPMX19_00754 0.88 +0.3
771,320 - MPMX19_00754 0.88 -0.6
771,361 + -1.1
771,361 + -1.3
771,361 + -0.3
771,361 + -0.4
771,361 + -0.0
771,361 + -1.6
771,361 + -0.1
771,361 + -0.4
771,361 + -1.1
771,361 + -1.4
771,361 + +0.6
771,361 + -2.5
771,362 - -0.5
771,362 - -0.9
771,362 - +0.4
771,362 - -0.3
771,362 - +0.2
771,362 - +0.4
771,362 - -1.2
771,362 - -0.2
771,362 - -0.1
771,362 - -0.6
771,362 - -1.4
771,638 + MPMX19_00755 0.62 -0.4
771,638 + MPMX19_00755 0.62 +1.3
771,638 + MPMX19_00755 0.62 +0.3
771,638 + MPMX19_00755 0.62 +1.2
771,638 + MPMX19_00755 0.62 -1.3
771,638 + MPMX19_00755 0.62 -0.4
771,639 - MPMX19_00755 0.62 +0.1
771,639 - MPMX19_00755 0.62 +1.7
771,639 - MPMX19_00755 0.62 -2.7
771,639 - MPMX19_00755 0.62 +0.6
771,639 - MPMX19_00755 0.62 -0.4
771,639 - MPMX19_00755 0.62 -0.2
771,639 - MPMX19_00755 0.62 -0.7
771,639 - MPMX19_00755 0.62 +0.1
771,833 + -0.1
771,833 + -2.0
771,834 - -0.3
771,960 + MPMX19_00756 0.49 +0.2
771,960 + MPMX19_00756 0.49 +1.0
772,008 + MPMX19_00756 0.68 -1.2
772,008 + MPMX19_00756 0.68 -0.3
772,008 + MPMX19_00756 0.68 +0.7
772,008 + MPMX19_00756 0.68 -1.9
772,008 + MPMX19_00756 0.68 -0.5
772,008 + MPMX19_00756 0.68 +0.7
772,008 + MPMX19_00756 0.68 -0.7
772,008 + MPMX19_00756 0.68 -1.2
772,008 + MPMX19_00756 0.68 +0.5
772,008 + MPMX19_00756 0.68 +0.4
772,008 + MPMX19_00756 0.68 +0.8
772,008 + MPMX19_00756 0.68 -2.4
772,008 + MPMX19_00756 0.68 -2.0
772,008 + MPMX19_00756 0.68 +0.0
772,008 + MPMX19_00756 0.68 +0.9
772,008 + MPMX19_00756 0.68 +0.4
772,008 + MPMX19_00756 0.68 +1.0
772,008 + MPMX19_00756 0.68 -1.1
772,008 + MPMX19_00756 0.68 -0.3
772,008 + MPMX19_00756 0.68 -0.4
772,008 + MPMX19_00756 0.68 -2.9
772,009 - MPMX19_00756 0.69 -0.3
772,009 - MPMX19_00756 0.69 -0.1
772,009 - MPMX19_00756 0.69 +0.1
772,009 - MPMX19_00756 0.69 -0.0
772,009 - MPMX19_00756 0.69 -1.1
772,009 - MPMX19_00756 0.69 -1.1
772,009 - MPMX19_00756 0.69 -0.6
772,009 - MPMX19_00756 0.69 +0.9
772,009 - MPMX19_00756 0.69 +0.0
772,009 - MPMX19_00756 0.69 +0.1
772,009 - MPMX19_00756 0.69 -0.7
772,009 - MPMX19_00756 0.69 +0.3
772,009 - MPMX19_00756 0.69 -0.4
772,009 - MPMX19_00756 0.69 +1.4
772,009 - MPMX19_00756 0.69 -0.3
772,027 + MPMX19_00756 0.76 +0.4
772,028 - MPMX19_00756 0.76 +0.5
772,028 - MPMX19_00756 0.76 -0.4
772,076 + -0.8
772,077 - -0.2
772,077 - -0.1
772,077 - -0.7
772,086 + +0.1
772,087 - -1.4
772,087 - -1.4
772,087 - -1.0
772,089 - +0.2

Or see this region's nucleotide sequence