Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00608

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00607 and MPMX19_00608 are separated by 105 nucleotidesMPMX19_00608 and MPMX19_00609 are separated by 526 nucleotidesMPMX19_00609 and MPMX19_00610 are separated by 33 nucleotides MPMX19_00607: MPMX19_00607 - 3-isopropylmalate dehydrogenase, at 621,048 to 622,163 _00607 MPMX19_00608: MPMX19_00608 - hypothetical protein, at 622,269 to 622,559 _00608 MPMX19_00609: MPMX19_00609 - Chemotaxis protein CheY, at 623,086 to 623,481 _00609 MPMX19_00610: MPMX19_00610 - hypothetical protein, at 623,515 to 624,939 _00610 Position (kb) 622 623Strain fitness (log2 ratio) -3 -2 -1 0 1at 621.306 kb on + strand, within MPMX19_00607at 621.306 kb on + strand, within MPMX19_00607at 621.306 kb on + strand, within MPMX19_00607at 621.306 kb on + strand, within MPMX19_00607at 621.306 kb on + strand, within MPMX19_00607at 621.306 kb on + strand, within MPMX19_00607at 621.306 kb on + strand, within MPMX19_00607at 621.306 kb on + strand, within MPMX19_00607at 621.307 kb on - strand, within MPMX19_00607at 621.307 kb on - strand, within MPMX19_00607at 621.307 kb on - strand, within MPMX19_00607at 621.307 kb on - strand, within MPMX19_00607at 621.307 kb on - strand, within MPMX19_00607at 621.307 kb on - strand, within MPMX19_00607at 621.477 kb on + strand, within MPMX19_00607at 621.477 kb on + strand, within MPMX19_00607at 621.477 kb on + strand, within MPMX19_00607at 621.477 kb on + strand, within MPMX19_00607at 621.478 kb on - strand, within MPMX19_00607at 621.478 kb on - strand, within MPMX19_00607at 621.478 kb on - strand, within MPMX19_00607at 621.478 kb on - strand, within MPMX19_00607at 621.546 kb on + strand, within MPMX19_00607at 621.546 kb on + strand, within MPMX19_00607at 621.546 kb on + strand, within MPMX19_00607at 621.546 kb on + strand, within MPMX19_00607at 621.546 kb on + strand, within MPMX19_00607at 621.546 kb on + strand, within MPMX19_00607at 621.546 kb on + strand, within MPMX19_00607at 621.546 kb on + strand, within MPMX19_00607at 621.546 kb on + strand, within MPMX19_00607at 621.546 kb on + strand, within MPMX19_00607at 621.546 kb on + strand, within MPMX19_00607at 621.546 kb on + strand, within MPMX19_00607at 621.547 kb on - strand, within MPMX19_00607at 621.547 kb on - strand, within MPMX19_00607at 621.547 kb on - strand, within MPMX19_00607at 621.547 kb on - strand, within MPMX19_00607at 621.547 kb on - strand, within MPMX19_00607at 621.547 kb on - strand, within MPMX19_00607at 621.547 kb on - strand, within MPMX19_00607at 621.547 kb on - strand, within MPMX19_00607at 621.547 kb on - strand, within MPMX19_00607at 621.547 kb on - strand, within MPMX19_00607at 621.547 kb on - strand, within MPMX19_00607at 621.547 kb on - strand, within MPMX19_00607at 621.547 kb on - strand, within MPMX19_00607at 621.547 kb on - strand, within MPMX19_00607at 621.547 kb on - strand, within MPMX19_00607at 621.723 kb on + strand, within MPMX19_00607at 621.723 kb on + strand, within MPMX19_00607at 621.723 kb on + strand, within MPMX19_00607at 621.723 kb on + strand, within MPMX19_00607at 621.723 kb on + strand, within MPMX19_00607at 621.723 kb on + strand, within MPMX19_00607at 621.723 kb on + strand, within MPMX19_00607at 621.723 kb on + strand, within MPMX19_00607at 621.723 kb on + strand, within MPMX19_00607at 621.723 kb on + strand, within MPMX19_00607at 621.723 kb on + strand, within MPMX19_00607at 621.723 kb on + strand, within MPMX19_00607at 621.723 kb on + strand, within MPMX19_00607at 621.723 kb on + strand, within MPMX19_00607at 621.723 kb on + strand, within MPMX19_00607at 621.723 kb on + strand, within MPMX19_00607at 621.723 kb on + strand, within MPMX19_00607at 621.723 kb on + strand, within MPMX19_00607at 621.723 kb on + strand, within MPMX19_00607at 621.723 kb on + strand, within MPMX19_00607at 621.723 kb on + strand, within MPMX19_00607at 621.723 kb on + strand, within MPMX19_00607at 621.723 kb on + strand, within MPMX19_00607at 621.724 kb on - strand, within MPMX19_00607at 621.724 kb on - strand, within MPMX19_00607at 621.724 kb on - strand, within MPMX19_00607at 621.724 kb on - strand, within MPMX19_00607at 621.724 kb on - strand, within MPMX19_00607at 621.724 kb on - strand, within MPMX19_00607at 621.724 kb on - strand, within MPMX19_00607at 621.724 kb on - strand, within MPMX19_00607at 621.724 kb on - strand, within MPMX19_00607at 621.724 kb on - strand, within MPMX19_00607at 621.724 kb on - strand, within MPMX19_00607at 621.724 kb on - strand, within MPMX19_00607at 621.724 kb on - strand, within MPMX19_00607at 621.724 kb on - strand, within MPMX19_00607at 621.724 kb on - strand, within MPMX19_00607at 621.724 kb on - strand, within MPMX19_00607at 621.903 kb on + strand, within MPMX19_00607at 621.903 kb on + strand, within MPMX19_00607at 621.903 kb on + strand, within MPMX19_00607at 621.903 kb on + strand, within MPMX19_00607at 621.904 kb on - strand, within MPMX19_00607at 621.904 kb on - strand, within MPMX19_00607at 622.245 kb on + strandat 622.245 kb on + strandat 622.246 kb on - strandat 622.246 kb on - strandat 622.461 kb on + strand, within MPMX19_00608at 622.535 kb on + strandat 622.535 kb on + strandat 622.535 kb on + strandat 622.535 kb on + strandat 622.535 kb on + strandat 622.536 kb on - strandat 622.536 kb on - strandat 622.536 kb on - strandat 622.536 kb on - strandat 622.628 kb on + strandat 622.629 kb on - strandat 622.629 kb on - strandat 622.629 kb on - strandat 622.629 kb on - strandat 622.630 kb on + strandat 622.630 kb on + strandat 622.630 kb on + strandat 622.630 kb on + strandat 622.644 kb on - strandat 622.780 kb on - strandat 622.780 kb on - strandat 622.839 kb on + strandat 622.840 kb on - strandat 622.859 kb on - strandat 622.861 kb on - strandat 622.861 kb on - strandat 622.956 kb on + strandat 622.995 kb on + strandat 622.996 kb on - strandat 622.996 kb on - strandat 622.996 kb on - strandat 622.997 kb on + strandat 622.998 kb on - strandat 622.998 kb on - strandat 623.000 kb on + strandat 623.000 kb on + strandat 623.427 kb on + strand, within MPMX19_00609at 623.427 kb on + strand, within MPMX19_00609at 623.427 kb on + strand, within MPMX19_00609at 623.427 kb on + strand, within MPMX19_00609at 623.427 kb on + strand, within MPMX19_00609at 623.427 kb on + strand, within MPMX19_00609at 623.427 kb on + strand, within MPMX19_00609at 623.427 kb on + strand, within MPMX19_00609at 623.428 kb on - strand, within MPMX19_00609at 623.428 kb on - strand, within MPMX19_00609at 623.428 kb on - strand, within MPMX19_00609at 623.428 kb on - strand, within MPMX19_00609at 623.428 kb on - strand, within MPMX19_00609at 623.512 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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621,306 + MPMX19_00607 0.23 +0.7
621,306 + MPMX19_00607 0.23 -0.3
621,306 + MPMX19_00607 0.23 -1.4
621,306 + MPMX19_00607 0.23 -0.1
621,306 + MPMX19_00607 0.23 -1.9
621,306 + MPMX19_00607 0.23 -1.1
621,306 + MPMX19_00607 0.23 -1.3
621,306 + MPMX19_00607 0.23 +0.1
621,307 - MPMX19_00607 0.23 -1.4
621,307 - MPMX19_00607 0.23 +0.7
621,307 - MPMX19_00607 0.23 -0.2
621,307 - MPMX19_00607 0.23 -0.6
621,307 - MPMX19_00607 0.23 -0.4
621,307 - MPMX19_00607 0.23 -0.1
621,477 + MPMX19_00607 0.38 -1.2
621,477 + MPMX19_00607 0.38 -0.6
621,477 + MPMX19_00607 0.38 -0.8
621,477 + MPMX19_00607 0.38 -3.0
621,478 - MPMX19_00607 0.39 +1.3
621,478 - MPMX19_00607 0.39 -0.9
621,478 - MPMX19_00607 0.39 -0.4
621,478 - MPMX19_00607 0.39 -0.9
621,546 + MPMX19_00607 0.45 -1.1
621,546 + MPMX19_00607 0.45 -0.0
621,546 + MPMX19_00607 0.45 -1.4
621,546 + MPMX19_00607 0.45 +0.2
621,546 + MPMX19_00607 0.45 +0.2
621,546 + MPMX19_00607 0.45 -0.3
621,546 + MPMX19_00607 0.45 +1.1
621,546 + MPMX19_00607 0.45 -0.8
621,546 + MPMX19_00607 0.45 -0.3
621,546 + MPMX19_00607 0.45 -1.7
621,546 + MPMX19_00607 0.45 -2.3
621,546 + MPMX19_00607 0.45 -1.4
621,547 - MPMX19_00607 0.45 +0.4
621,547 - MPMX19_00607 0.45 -1.4
621,547 - MPMX19_00607 0.45 -0.2
621,547 - MPMX19_00607 0.45 +0.9
621,547 - MPMX19_00607 0.45 -1.7
621,547 - MPMX19_00607 0.45 +1.2
621,547 - MPMX19_00607 0.45 -0.0
621,547 - MPMX19_00607 0.45 -1.4
621,547 - MPMX19_00607 0.45 -1.3
621,547 - MPMX19_00607 0.45 +0.1
621,547 - MPMX19_00607 0.45 -2.1
621,547 - MPMX19_00607 0.45 +1.2
621,547 - MPMX19_00607 0.45 -0.9
621,547 - MPMX19_00607 0.45 -1.4
621,547 - MPMX19_00607 0.45 -0.0
621,723 + MPMX19_00607 0.60 -1.7
621,723 + MPMX19_00607 0.60 -0.7
621,723 + MPMX19_00607 0.60 +1.0
621,723 + MPMX19_00607 0.60 -0.1
621,723 + MPMX19_00607 0.60 +0.6
621,723 + MPMX19_00607 0.60 +0.3
621,723 + MPMX19_00607 0.60 +0.3
621,723 + MPMX19_00607 0.60 -0.9
621,723 + MPMX19_00607 0.60 -1.4
621,723 + MPMX19_00607 0.60 -1.6
621,723 + MPMX19_00607 0.60 +0.0
621,723 + MPMX19_00607 0.60 +0.3
621,723 + MPMX19_00607 0.60 +0.3
621,723 + MPMX19_00607 0.60 +0.5
621,723 + MPMX19_00607 0.60 -0.2
621,723 + MPMX19_00607 0.60 -0.2
621,723 + MPMX19_00607 0.60 -0.9
621,723 + MPMX19_00607 0.60 -1.2
621,723 + MPMX19_00607 0.60 -1.7
621,723 + MPMX19_00607 0.60 +0.7
621,723 + MPMX19_00607 0.60 -0.4
621,723 + MPMX19_00607 0.60 -0.7
621,723 + MPMX19_00607 0.60 +0.7
621,724 - MPMX19_00607 0.61 -0.7
621,724 - MPMX19_00607 0.61 -1.6
621,724 - MPMX19_00607 0.61 +0.1
621,724 - MPMX19_00607 0.61 -0.4
621,724 - MPMX19_00607 0.61 +0.1
621,724 - MPMX19_00607 0.61 -0.7
621,724 - MPMX19_00607 0.61 -2.7
621,724 - MPMX19_00607 0.61 +0.6
621,724 - MPMX19_00607 0.61 -2.4
621,724 - MPMX19_00607 0.61 +0.3
621,724 - MPMX19_00607 0.61 -0.9
621,724 - MPMX19_00607 0.61 -0.2
621,724 - MPMX19_00607 0.61 +0.8
621,724 - MPMX19_00607 0.61 -1.7
621,724 - MPMX19_00607 0.61 +0.3
621,724 - MPMX19_00607 0.61 +0.5
621,903 + MPMX19_00607 0.77 -0.3
621,903 + MPMX19_00607 0.77 -1.6
621,903 + MPMX19_00607 0.77 -1.9
621,903 + MPMX19_00607 0.77 -1.4
621,904 - MPMX19_00607 0.77 +0.7
621,904 - MPMX19_00607 0.77 +0.0
622,245 + -0.7
622,245 + +0.6
622,246 - -0.0
622,246 - -2.3
622,461 + MPMX19_00608 0.66 -1.5
622,535 + -0.3
622,535 + -2.4
622,535 + -1.1
622,535 + -0.0
622,535 + +0.3
622,536 - -0.7
622,536 - +0.9
622,536 - +0.5
622,536 - -1.6
622,628 + -1.1
622,629 - -0.2
622,629 - +0.1
622,629 - -1.1
622,629 - -0.9
622,630 + -1.1
622,630 + -0.3
622,630 + -1.3
622,630 + +0.8
622,644 - -2.9
622,780 - -1.5
622,780 - +0.3
622,839 + +0.1
622,840 - -2.3
622,859 - +0.2
622,861 - -1.0
622,861 - -1.1
622,956 + -1.4
622,995 + -1.6
622,996 - +0.1
622,996 - -0.4
622,996 - -0.3
622,997 + +1.0
622,998 - -0.6
622,998 - +0.0
623,000 + -1.2
623,000 + -0.9
623,427 + MPMX19_00609 0.86 -1.4
623,427 + MPMX19_00609 0.86 -0.9
623,427 + MPMX19_00609 0.86 -0.4
623,427 + MPMX19_00609 0.86 -1.6
623,427 + MPMX19_00609 0.86 -0.4
623,427 + MPMX19_00609 0.86 -0.6
623,427 + MPMX19_00609 0.86 -0.3
623,427 + MPMX19_00609 0.86 -2.4
623,428 - MPMX19_00609 0.86 +0.6
623,428 - MPMX19_00609 0.86 -0.4
623,428 - MPMX19_00609 0.86 -0.3
623,428 - MPMX19_00609 0.86 +1.0
623,428 - MPMX19_00609 0.86 -1.0
623,512 - -1.2

Or see this region's nucleotide sequence