Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00150

Experiment: NF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00148 and MPMX19_00149 overlap by 17 nucleotidesMPMX19_00149 and MPMX19_00150 are separated by 108 nucleotidesMPMX19_00150 and MPMX19_00151 overlap by 4 nucleotidesMPMX19_00151 and MPMX19_00152 are separated by 45 nucleotides MPMX19_00148: MPMX19_00148 - hypothetical protein, at 158,788 to 159,306 _00148 MPMX19_00149: MPMX19_00149 - hypothetical protein, at 159,290 to 159,763 _00149 MPMX19_00150: MPMX19_00150 - hypothetical protein, at 159,872 to 160,174 _00150 MPMX19_00151: MPMX19_00151 - Tyrosine recombinase XerC, at 160,171 to 161,118 _00151 MPMX19_00152: MPMX19_00152 - hypothetical protein, at 161,164 to 162,177 _00152 Position (kb) 159 160 161Strain fitness (log2 ratio) -2 -1 0 1 2at 158.986 kb on + strand, within MPMX19_00148at 158.987 kb on - strand, within MPMX19_00148at 158.987 kb on - strand, within MPMX19_00148at 158.987 kb on - strand, within MPMX19_00148at 159.344 kb on + strand, within MPMX19_00149at 159.497 kb on + strand, within MPMX19_00149at 159.497 kb on + strand, within MPMX19_00149at 159.497 kb on + strand, within MPMX19_00149at 159.498 kb on - strand, within MPMX19_00149at 159.498 kb on - strand, within MPMX19_00149at 159.498 kb on - strand, within MPMX19_00149at 159.498 kb on - strand, within MPMX19_00149at 159.498 kb on - strand, within MPMX19_00149at 159.498 kb on - strand, within MPMX19_00149at 159.498 kb on - strand, within MPMX19_00149at 159.503 kb on + strand, within MPMX19_00149at 159.503 kb on + strand, within MPMX19_00149at 159.503 kb on + strand, within MPMX19_00149at 159.582 kb on - strand, within MPMX19_00149at 159.582 kb on - strand, within MPMX19_00149at 159.611 kb on + strand, within MPMX19_00149at 159.611 kb on + strand, within MPMX19_00149at 159.612 kb on - strand, within MPMX19_00149at 159.612 kb on - strand, within MPMX19_00149at 159.612 kb on - strand, within MPMX19_00149at 159.710 kb on + strand, within MPMX19_00149at 159.710 kb on + strand, within MPMX19_00149at 159.711 kb on - strand, within MPMX19_00149at 159.713 kb on - strand, within MPMX19_00149at 159.723 kb on + strandat 159.723 kb on + strandat 159.778 kb on + strandat 159.778 kb on + strandat 159.779 kb on - strandat 159.956 kb on + strand, within MPMX19_00150at 159.956 kb on + strand, within MPMX19_00150at 159.956 kb on + strand, within MPMX19_00150at 159.956 kb on + strand, within MPMX19_00150at 159.956 kb on + strand, within MPMX19_00150at 159.956 kb on + strand, within MPMX19_00150at 159.956 kb on + strand, within MPMX19_00150at 159.956 kb on + strand, within MPMX19_00150at 159.956 kb on + strand, within MPMX19_00150at 159.957 kb on - strand, within MPMX19_00150at 159.957 kb on - strand, within MPMX19_00150at 159.957 kb on - strand, within MPMX19_00150at 159.957 kb on - strand, within MPMX19_00150at 159.957 kb on - strand, within MPMX19_00150at 159.957 kb on - strand, within MPMX19_00150at 159.957 kb on - strand, within MPMX19_00150at 159.957 kb on - strand, within MPMX19_00150at 159.957 kb on - strand, within MPMX19_00150at 159.957 kb on - strand, within MPMX19_00150at 159.957 kb on - strand, within MPMX19_00150at 160.039 kb on - strand, within MPMX19_00150at 160.229 kb on + strandat 160.229 kb on + strandat 160.229 kb on + strandat 160.229 kb on + strandat 160.229 kb on + strandat 160.229 kb on + strandat 160.229 kb on + strandat 160.230 kb on - strandat 160.230 kb on - strandat 160.230 kb on - strandat 160.230 kb on - strandat 160.230 kb on - strandat 160.230 kb on - strandat 160.230 kb on - strandat 160.288 kb on + strand, within MPMX19_00151at 160.288 kb on + strand, within MPMX19_00151at 160.289 kb on - strand, within MPMX19_00151at 160.289 kb on - strand, within MPMX19_00151at 160.402 kb on + strand, within MPMX19_00151at 160.402 kb on + strand, within MPMX19_00151at 160.402 kb on + strand, within MPMX19_00151at 160.402 kb on + strand, within MPMX19_00151at 160.402 kb on + strand, within MPMX19_00151at 160.402 kb on + strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.466 kb on + strand, within MPMX19_00151at 160.466 kb on + strand, within MPMX19_00151at 160.466 kb on + strand, within MPMX19_00151at 160.466 kb on + strand, within MPMX19_00151at 160.466 kb on + strand, within MPMX19_00151at 160.467 kb on - strand, within MPMX19_00151at 160.467 kb on - strand, within MPMX19_00151at 160.467 kb on - strand, within MPMX19_00151at 160.467 kb on - strand, within MPMX19_00151at 160.467 kb on - strand, within MPMX19_00151at 160.467 kb on - strand, within MPMX19_00151at 160.546 kb on + strand, within MPMX19_00151at 160.546 kb on + strand, within MPMX19_00151at 160.546 kb on + strand, within MPMX19_00151at 160.547 kb on - strand, within MPMX19_00151at 160.708 kb on + strand, within MPMX19_00151at 160.708 kb on + strand, within MPMX19_00151at 160.708 kb on + strand, within MPMX19_00151at 160.708 kb on + strand, within MPMX19_00151at 160.708 kb on + strand, within MPMX19_00151at 160.708 kb on + strand, within MPMX19_00151at 160.708 kb on + strand, within MPMX19_00151at 160.708 kb on + strand, within MPMX19_00151at 160.708 kb on + strand, within MPMX19_00151at 160.708 kb on + strand, within MPMX19_00151at 160.708 kb on + strand, within MPMX19_00151at 160.709 kb on - strand, within MPMX19_00151at 160.709 kb on - strand, within MPMX19_00151at 160.709 kb on - strand, within MPMX19_00151at 160.709 kb on - strand, within MPMX19_00151at 160.709 kb on - strand, within MPMX19_00151at 160.709 kb on - strand, within MPMX19_00151at 160.709 kb on - strand, within MPMX19_00151at 160.709 kb on - strand, within MPMX19_00151at 160.709 kb on - strand, within MPMX19_00151at 160.901 kb on - strand, within MPMX19_00151at 161.004 kb on + strand, within MPMX19_00151at 161.005 kb on - strand, within MPMX19_00151at 161.057 kb on + strandat 161.147 kb on + strandat 161.147 kb on + strandat 161.148 kb on - strandat 161.159 kb on - strandat 161.159 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NF
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158,986 + MPMX19_00148 0.38 -2.0
158,987 - MPMX19_00148 0.38 -0.8
158,987 - MPMX19_00148 0.38 +0.4
158,987 - MPMX19_00148 0.38 -0.7
159,344 + MPMX19_00149 0.11 -1.1
159,497 + MPMX19_00149 0.44 -1.1
159,497 + MPMX19_00149 0.44 -0.6
159,497 + MPMX19_00149 0.44 -2.3
159,498 - MPMX19_00149 0.44 +0.2
159,498 - MPMX19_00149 0.44 -0.8
159,498 - MPMX19_00149 0.44 -1.5
159,498 - MPMX19_00149 0.44 -0.6
159,498 - MPMX19_00149 0.44 +0.1
159,498 - MPMX19_00149 0.44 -0.5
159,498 - MPMX19_00149 0.44 +0.7
159,503 + MPMX19_00149 0.45 +0.8
159,503 + MPMX19_00149 0.45 -2.5
159,503 + MPMX19_00149 0.45 -2.0
159,582 - MPMX19_00149 0.62 -0.2
159,582 - MPMX19_00149 0.62 -0.5
159,611 + MPMX19_00149 0.68 -0.0
159,611 + MPMX19_00149 0.68 -2.5
159,612 - MPMX19_00149 0.68 -1.0
159,612 - MPMX19_00149 0.68 -0.7
159,612 - MPMX19_00149 0.68 -0.2
159,710 + MPMX19_00149 0.89 -1.4
159,710 + MPMX19_00149 0.89 -0.1
159,711 - MPMX19_00149 0.89 -0.9
159,713 - MPMX19_00149 0.89 -0.5
159,723 + -0.5
159,723 + +0.6
159,778 + -1.2
159,778 + -0.5
159,779 - -1.9
159,956 + MPMX19_00150 0.28 -1.7
159,956 + MPMX19_00150 0.28 -1.4
159,956 + MPMX19_00150 0.28 +0.1
159,956 + MPMX19_00150 0.28 -0.1
159,956 + MPMX19_00150 0.28 +0.2
159,956 + MPMX19_00150 0.28 +0.2
159,956 + MPMX19_00150 0.28 -1.7
159,956 + MPMX19_00150 0.28 -0.4
159,956 + MPMX19_00150 0.28 +0.1
159,957 - MPMX19_00150 0.28 -1.3
159,957 - MPMX19_00150 0.28 -1.7
159,957 - MPMX19_00150 0.28 -0.3
159,957 - MPMX19_00150 0.28 -1.0
159,957 - MPMX19_00150 0.28 -1.9
159,957 - MPMX19_00150 0.28 -1.9
159,957 - MPMX19_00150 0.28 +0.2
159,957 - MPMX19_00150 0.28 -0.4
159,957 - MPMX19_00150 0.28 +0.9
159,957 - MPMX19_00150 0.28 -1.4
159,957 - MPMX19_00150 0.28 -1.1
160,039 - MPMX19_00150 0.55 -1.4
160,229 + -2.4
160,229 + -1.8
160,229 + -1.7
160,229 + -1.2
160,229 + -1.7
160,229 + +0.1
160,229 + -0.0
160,230 - +0.8
160,230 - -0.9
160,230 - -1.4
160,230 - -1.4
160,230 - +0.9
160,230 - -1.0
160,230 - +2.4
160,288 + MPMX19_00151 0.12 -1.8
160,288 + MPMX19_00151 0.12 -1.6
160,289 - MPMX19_00151 0.12 -0.1
160,289 - MPMX19_00151 0.12 -0.6
160,402 + MPMX19_00151 0.24 -0.6
160,402 + MPMX19_00151 0.24 +0.2
160,402 + MPMX19_00151 0.24 +0.2
160,402 + MPMX19_00151 0.24 -0.5
160,402 + MPMX19_00151 0.24 -1.0
160,402 + MPMX19_00151 0.24 -0.9
160,403 - MPMX19_00151 0.24 -1.0
160,403 - MPMX19_00151 0.24 -1.2
160,403 - MPMX19_00151 0.24 +1.8
160,403 - MPMX19_00151 0.24 -0.2
160,403 - MPMX19_00151 0.24 -0.8
160,403 - MPMX19_00151 0.24 -0.1
160,403 - MPMX19_00151 0.24 -2.4
160,403 - MPMX19_00151 0.24 -0.5
160,403 - MPMX19_00151 0.24 -0.5
160,403 - MPMX19_00151 0.24 -0.7
160,403 - MPMX19_00151 0.24 -0.5
160,403 - MPMX19_00151 0.24 +0.4
160,403 - MPMX19_00151 0.24 +0.5
160,403 - MPMX19_00151 0.24 -1.0
160,403 - MPMX19_00151 0.24 -1.1
160,466 + MPMX19_00151 0.31 -1.1
160,466 + MPMX19_00151 0.31 -1.5
160,466 + MPMX19_00151 0.31 +1.6
160,466 + MPMX19_00151 0.31 -0.2
160,466 + MPMX19_00151 0.31 -1.8
160,467 - MPMX19_00151 0.31 -0.8
160,467 - MPMX19_00151 0.31 -1.3
160,467 - MPMX19_00151 0.31 -0.1
160,467 - MPMX19_00151 0.31 +0.4
160,467 - MPMX19_00151 0.31 -2.5
160,467 - MPMX19_00151 0.31 -0.6
160,546 + MPMX19_00151 0.40 -1.3
160,546 + MPMX19_00151 0.40 -1.0
160,546 + MPMX19_00151 0.40 +0.6
160,547 - MPMX19_00151 0.40 -0.8
160,708 + MPMX19_00151 0.57 -0.1
160,708 + MPMX19_00151 0.57 -0.5
160,708 + MPMX19_00151 0.57 +1.5
160,708 + MPMX19_00151 0.57 -0.2
160,708 + MPMX19_00151 0.57 -2.5
160,708 + MPMX19_00151 0.57 -1.2
160,708 + MPMX19_00151 0.57 -0.6
160,708 + MPMX19_00151 0.57 +0.8
160,708 + MPMX19_00151 0.57 -0.4
160,708 + MPMX19_00151 0.57 -0.7
160,708 + MPMX19_00151 0.57 -0.2
160,709 - MPMX19_00151 0.57 -0.2
160,709 - MPMX19_00151 0.57 -0.6
160,709 - MPMX19_00151 0.57 -1.2
160,709 - MPMX19_00151 0.57 +0.4
160,709 - MPMX19_00151 0.57 -0.8
160,709 - MPMX19_00151 0.57 +1.8
160,709 - MPMX19_00151 0.57 -1.8
160,709 - MPMX19_00151 0.57 -0.4
160,709 - MPMX19_00151 0.57 +0.1
160,901 - MPMX19_00151 0.77 +0.7
161,004 + MPMX19_00151 0.88 -1.4
161,005 - MPMX19_00151 0.88 -1.3
161,057 + -1.9
161,147 + -1.0
161,147 + +0.6
161,148 - -0.2
161,159 - -0.5
161,159 - -1.7

Or see this region's nucleotide sequence