Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00111 and MPMX19_00112 are separated by 219 nucleotides MPMX19_00112 and MPMX19_00113 are separated by 51 nucleotides MPMX19_00113 and MPMX19_00114 overlap by 4 nucleotides MPMX19_00114 and MPMX19_00115 are separated by 30 nucleotides
MPMX19_00111: MPMX19_00111 - Lysine--tRNA ligase, at 121,043 to 122,611
_00111
MPMX19_00112: MPMX19_00112 - Multidrug transporter EmrE, at 122,831 to 123,154
_00112
MPMX19_00113: MPMX19_00113 - HTH-type transcriptional regulator, at 123,206 to 123,544
_00113
MPMX19_00114: MPMX19_00114 - hypothetical protein, at 123,541 to 124,014
_00114
MPMX19_00115: MPMX19_00115 - hypothetical protein, at 124,045 to 126,819
_00115
Position (kb)
122
123
124 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 122.640 kb on - strand at 122.640 kb on - strand at 122.640 kb on - strand at 122.667 kb on - strand at 122.667 kb on - strand at 122.723 kb on + strand at 122.723 kb on + strand at 122.723 kb on + strand at 122.723 kb on + strand at 122.723 kb on + strand at 122.723 kb on + strand at 122.724 kb on - strand at 122.724 kb on - strand at 122.724 kb on - strand at 122.724 kb on - strand at 122.724 kb on - strand at 122.724 kb on - strand at 122.724 kb on - strand at 122.804 kb on + strand at 122.804 kb on + strand at 122.804 kb on + strand at 122.805 kb on - strand at 122.805 kb on - strand at 122.805 kb on - strand at 122.805 kb on - strand at 122.843 kb on + strand at 122.843 kb on + strand at 122.843 kb on + strand at 122.843 kb on + strand at 122.843 kb on + strand at 122.843 kb on + strand at 122.844 kb on - strand at 122.844 kb on - strand at 122.844 kb on - strand at 122.844 kb on - strand at 122.844 kb on - strand at 122.844 kb on - strand at 122.945 kb on + strand, within MPMX19_00112 at 122.945 kb on + strand, within MPMX19_00112 at 122.945 kb on + strand, within MPMX19_00112 at 122.945 kb on + strand, within MPMX19_00112 at 122.945 kb on + strand, within MPMX19_00112 at 122.945 kb on + strand, within MPMX19_00112 at 122.945 kb on + strand, within MPMX19_00112 at 122.946 kb on - strand, within MPMX19_00112 at 123.005 kb on + strand, within MPMX19_00112 at 123.005 kb on + strand, within MPMX19_00112 at 123.006 kb on - strand, within MPMX19_00112 at 123.152 kb on + strand at 123.152 kb on + strand at 123.895 kb on + strand, within MPMX19_00114 at 123.895 kb on + strand, within MPMX19_00114 at 123.895 kb on + strand, within MPMX19_00114 at 123.895 kb on + strand, within MPMX19_00114 at 123.895 kb on + strand, within MPMX19_00114 at 123.895 kb on + strand, within MPMX19_00114 at 123.895 kb on + strand, within MPMX19_00114 at 123.895 kb on + strand, within MPMX19_00114 at 123.895 kb on + strand, within MPMX19_00114 at 123.895 kb on + strand, within MPMX19_00114 at 123.895 kb on + strand, within MPMX19_00114 at 123.896 kb on - strand, within MPMX19_00114 at 123.896 kb on - strand, within MPMX19_00114 at 123.896 kb on - strand, within MPMX19_00114 at 123.896 kb on - strand, within MPMX19_00114 at 123.896 kb on - strand, within MPMX19_00114 at 123.896 kb on - strand, within MPMX19_00114 at 123.896 kb on - strand, within MPMX19_00114 at 123.896 kb on - strand, within MPMX19_00114 at 123.896 kb on - strand, within MPMX19_00114 at 123.896 kb on - strand, within MPMX19_00114 at 124.012 kb on + strand at 124.012 kb on + strand at 124.012 kb on + strand at 124.012 kb on + strand at 124.012 kb on + strand at 124.012 kb on + strand at 124.013 kb on - strand at 124.013 kb on - strand at 124.013 kb on - strand at 124.013 kb on - strand at 124.013 kb on - strand at 124.013 kb on - strand at 124.013 kb on - strand at 124.013 kb on - strand at 124.029 kb on + strand at 124.029 kb on + strand at 124.029 kb on + strand at 124.030 kb on - strand at 124.030 kb on - strand at 124.030 kb on - strand at 124.046 kb on + strand at 124.046 kb on + strand at 124.046 kb on + strand at 124.046 kb on + strand at 124.046 kb on + strand at 124.046 kb on + strand at 124.046 kb on + strand at 124.046 kb on + strand at 124.046 kb on + strand at 124.046 kb on + strand at 124.046 kb on + strand at 124.047 kb on - strand at 124.047 kb on - strand at 124.047 kb on - strand at 124.047 kb on - strand at 124.047 kb on - strand at 124.047 kb on - strand at 124.047 kb on - strand at 124.047 kb on - strand at 124.047 kb on - strand at 124.047 kb on - strand at 124.047 kb on - strand at 124.047 kb on - strand at 124.124 kb on + strand at 124.124 kb on + strand at 124.124 kb on + strand at 124.124 kb on + strand at 124.124 kb on + strand at 124.124 kb on + strand at 124.124 kb on + strand at 124.124 kb on + strand at 124.124 kb on + strand at 124.124 kb on + strand at 124.125 kb on - strand at 124.125 kb on - strand at 124.125 kb on - strand at 124.125 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 122,640 - +0.1 122,640 - +0.2 122,640 - +1.3 122,667 - -1.5 122,667 - +1.1 122,723 + -0.0 122,723 + -0.3 122,723 + +0.6 122,723 + -0.0 122,723 + +0.5 122,723 + -0.0 122,724 - -1.0 122,724 - +1.1 122,724 - +0.5 122,724 - -1.2 122,724 - -0.5 122,724 - -1.5 122,724 - -1.2 122,804 + -0.8 122,804 + -0.2 122,804 + -1.2 122,805 - +1.1 122,805 - -0.9 122,805 - +0.6 122,805 - +0.8 122,843 + -1.0 122,843 + +0.5 122,843 + +0.6 122,843 + +1.0 122,843 + +0.1 122,843 + +0.5 122,844 - +0.5 122,844 - +0.8 122,844 - +0.8 122,844 - -0.9 122,844 - -0.5 122,844 - -0.4 122,945 + MPMX19_00112 0.35 +1.1 122,945 + MPMX19_00112 0.35 +1.0 122,945 + MPMX19_00112 0.35 -0.5 122,945 + MPMX19_00112 0.35 -1.0 122,945 + MPMX19_00112 0.35 -1.1 122,945 + MPMX19_00112 0.35 -1.5 122,945 + MPMX19_00112 0.35 -1.2 122,946 - MPMX19_00112 0.35 +0.2 123,005 + MPMX19_00112 0.54 -0.3 123,005 + MPMX19_00112 0.54 +0.6 123,006 - MPMX19_00112 0.54 +0.8 123,152 + -0.2 123,152 + -1.3 123,895 + MPMX19_00114 0.75 +0.7 123,895 + MPMX19_00114 0.75 -0.3 123,895 + MPMX19_00114 0.75 -1.0 123,895 + MPMX19_00114 0.75 -0.5 123,895 + MPMX19_00114 0.75 +1.2 123,895 + MPMX19_00114 0.75 -0.7 123,895 + MPMX19_00114 0.75 +0.6 123,895 + MPMX19_00114 0.75 -0.3 123,895 + MPMX19_00114 0.75 -0.3 123,895 + MPMX19_00114 0.75 +0.1 123,895 + MPMX19_00114 0.75 -2.0 123,896 - MPMX19_00114 0.75 +0.4 123,896 - MPMX19_00114 0.75 +1.6 123,896 - MPMX19_00114 0.75 +1.8 123,896 - MPMX19_00114 0.75 +0.2 123,896 - MPMX19_00114 0.75 +1.2 123,896 - MPMX19_00114 0.75 -2.7 123,896 - MPMX19_00114 0.75 -0.9 123,896 - MPMX19_00114 0.75 +0.9 123,896 - MPMX19_00114 0.75 -0.4 123,896 - MPMX19_00114 0.75 +1.4 124,012 + -1.0 124,012 + -1.5 124,012 + -0.8 124,012 + -0.8 124,012 + -0.7 124,012 + -0.6 124,013 - +0.2 124,013 - -0.5 124,013 - -0.0 124,013 - +0.5 124,013 - -0.0 124,013 - -1.2 124,013 - -0.7 124,013 - +0.7 124,029 + -2.1 124,029 + -0.6 124,029 + -1.8 124,030 - +0.5 124,030 - -0.9 124,030 - +0.9 124,046 + +0.1 124,046 + -1.4 124,046 + +0.2 124,046 + +0.2 124,046 + +1.0 124,046 + -1.5 124,046 + -2.6 124,046 + -0.3 124,046 + +0.7 124,046 + -1.0 124,046 + -1.2 124,047 - -0.0 124,047 - +0.7 124,047 - +0.9 124,047 - -1.2 124,047 - -0.7 124,047 - +0.7 124,047 - +0.8 124,047 - -2.0 124,047 - -1.9 124,047 - -0.4 124,047 - +2.1 124,047 - -1.8 124,124 + +0.4 124,124 + -2.3 124,124 + +0.3 124,124 + -0.7 124,124 + -1.0 124,124 + +0.2 124,124 + +0.1 124,124 + -0.6 124,124 + -1.8 124,124 + -0.9 124,125 - -0.9 124,125 - -1.5 124,125 - +0.4 124,125 - -0.4
Or see this region's nucleotide sequence