Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00092 and MPMX19_00093 are separated by 497 nucleotides MPMX19_00093 and MPMX19_00094 overlap by 17 nucleotides MPMX19_00094 and MPMX19_00095 are separated by 351 nucleotides
MPMX19_00092: MPMX19_00092 - Elongation factor 4, at 98,458 to 100,260
_00092
MPMX19_00093: MPMX19_00093 - hypothetical protein, at 100,758 to 101,129
_00093
MPMX19_00094: MPMX19_00094 - hypothetical protein, at 101,113 to 101,391
_00094
MPMX19_00095: MPMX19_00095 - ATP-dependent RNA helicase HrpB, at 101,743 to 104,307
_00095
Position (kb) 101
102 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 100.296 kb on - strand at 100.296 kb on - strand at 100.296 kb on - strand at 100.296 kb on - strand at 100.353 kb on - strand at 100.649 kb on + strand at 100.649 kb on + strand at 100.649 kb on + strand at 100.649 kb on + strand at 100.649 kb on + strand at 100.650 kb on - strand at 100.650 kb on - strand at 100.650 kb on - strand at 100.650 kb on - strand at 100.650 kb on - strand at 100.650 kb on - strand at 100.650 kb on - strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.654 kb on + strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.655 kb on - strand at 100.676 kb on + strand at 100.676 kb on + strand at 100.712 kb on + strand at 100.712 kb on + strand at 100.712 kb on + strand at 100.712 kb on + strand at 100.713 kb on - strand at 100.713 kb on - strand at 100.713 kb on - strand at 100.713 kb on - strand at 100.713 kb on - strand at 100.739 kb on + strand at 100.740 kb on - strand at 100.759 kb on + strand at 100.759 kb on + strand at 100.759 kb on + strand at 100.759 kb on + strand at 100.759 kb on + strand at 100.759 kb on + strand at 100.759 kb on + strand at 100.759 kb on + strand at 100.759 kb on + strand at 100.759 kb on + strand at 100.759 kb on + strand at 100.759 kb on + strand at 100.760 kb on - strand at 100.760 kb on - strand at 101.258 kb on + strand, within MPMX19_00094 at 101.258 kb on + strand, within MPMX19_00094 at 101.259 kb on - strand, within MPMX19_00094 at 101.285 kb on + strand, within MPMX19_00094 at 101.286 kb on - strand, within MPMX19_00094 at 101.286 kb on - strand, within MPMX19_00094 at 101.286 kb on - strand, within MPMX19_00094 at 101.384 kb on + strand at 101.384 kb on + strand at 101.384 kb on + strand at 101.384 kb on + strand at 101.384 kb on + strand at 101.385 kb on - strand at 101.385 kb on - strand at 101.385 kb on - strand at 101.466 kb on - strand at 101.466 kb on - strand at 101.466 kb on - strand at 101.473 kb on - strand at 101.473 kb on - strand at 101.514 kb on + strand at 101.514 kb on + strand at 101.514 kb on + strand at 101.514 kb on + strand at 101.515 kb on - strand at 101.515 kb on - strand at 101.516 kb on + strand at 101.516 kb on + strand at 101.516 kb on + strand at 101.517 kb on - strand at 101.517 kb on - strand at 101.517 kb on - strand at 101.529 kb on + strand at 101.530 kb on - strand at 101.530 kb on - strand at 101.531 kb on + strand at 101.531 kb on + strand at 101.531 kb on + strand at 101.532 kb on - strand at 101.532 kb on - strand at 101.532 kb on - strand at 101.542 kb on - strand at 101.554 kb on + strand at 101.554 kb on + strand at 101.554 kb on + strand at 101.555 kb on - strand at 101.555 kb on - strand at 101.555 kb on - strand at 101.555 kb on - strand at 101.555 kb on - strand at 101.555 kb on - strand at 101.570 kb on - strand at 101.571 kb on + strand at 101.572 kb on - strand at 101.745 kb on - strand at 101.804 kb on + strand at 101.804 kb on + strand at 101.804 kb on + strand at 101.804 kb on + strand at 101.804 kb on + strand at 101.804 kb on + strand at 101.804 kb on + strand at 101.804 kb on + strand at 101.805 kb on - strand at 101.805 kb on - strand at 101.805 kb on - strand at 101.849 kb on + strand at 101.849 kb on + strand at 101.849 kb on + strand at 101.849 kb on + strand at 101.849 kb on + strand at 101.849 kb on + strand at 101.849 kb on + strand at 101.849 kb on + strand at 101.850 kb on - strand at 101.850 kb on - strand at 101.850 kb on - strand at 101.850 kb on - strand at 101.850 kb on - strand at 101.850 kb on - strand at 101.850 kb on - strand at 101.850 kb on - strand at 101.850 kb on - strand at 101.850 kb on - strand at 101.850 kb on - strand at 101.850 kb on - strand at 101.850 kb on - strand at 101.850 kb on - strand at 102.017 kb on + strand, within MPMX19_00095 at 102.017 kb on + strand, within MPMX19_00095 at 102.018 kb on - strand, within MPMX19_00095 at 102.018 kb on - strand, within MPMX19_00095 at 102.018 kb on - strand, within MPMX19_00095 at 102.233 kb on + strand, within MPMX19_00095 at 102.233 kb on + strand, within MPMX19_00095 at 102.233 kb on + strand, within MPMX19_00095 at 102.233 kb on + strand, within MPMX19_00095 at 102.234 kb on - strand, within MPMX19_00095 at 102.234 kb on - strand, within MPMX19_00095 at 102.234 kb on - strand, within MPMX19_00095 at 102.234 kb on - strand, within MPMX19_00095 at 102.234 kb on - strand, within MPMX19_00095 at 102.234 kb on - strand, within MPMX19_00095
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 100,296 - +0.0 100,296 - +0.7 100,296 - -0.8 100,296 - -0.5 100,353 - +0.3 100,649 + -1.0 100,649 + -0.8 100,649 + -2.7 100,649 + -1.0 100,649 + +0.8 100,650 - +0.5 100,650 - -0.2 100,650 - +0.9 100,650 - +0.3 100,650 - -0.2 100,650 - -1.0 100,650 - +0.0 100,654 + -1.1 100,654 + -0.1 100,654 + +0.2 100,654 + -0.6 100,654 + -0.4 100,654 + +0.5 100,654 + +0.6 100,654 + -0.5 100,654 + +1.0 100,654 + +0.2 100,654 + -0.5 100,654 + +0.5 100,654 + -0.6 100,654 + -1.3 100,654 + +0.6 100,654 + +0.9 100,654 + +0.1 100,654 + +0.0 100,654 + -3.3 100,655 - -0.2 100,655 - -0.2 100,655 - +1.5 100,655 - -1.7 100,655 - +1.4 100,655 - +0.9 100,655 - -0.9 100,655 - -0.5 100,655 - -0.8 100,655 - +0.8 100,655 - -1.4 100,655 - +0.5 100,655 - +2.0 100,655 - -0.4 100,655 - +0.3 100,655 - -0.8 100,655 - +0.3 100,655 - +0.3 100,655 - -0.1 100,655 - +1.1 100,676 + -0.0 100,676 + -0.1 100,712 + +0.4 100,712 + +0.5 100,712 + -1.4 100,712 + -1.0 100,713 - +0.2 100,713 - -0.1 100,713 - +0.1 100,713 - -0.5 100,713 - -0.2 100,739 + -0.7 100,740 - +0.1 100,759 + +0.4 100,759 + -0.8 100,759 + +0.1 100,759 + +0.7 100,759 + +1.2 100,759 + -0.6 100,759 + +1.0 100,759 + -0.6 100,759 + -1.2 100,759 + -1.4 100,759 + -0.7 100,759 + -0.8 100,760 - -1.3 100,760 - +1.1 101,258 + MPMX19_00094 0.52 -1.6 101,258 + MPMX19_00094 0.52 -1.7 101,259 - MPMX19_00094 0.52 -0.4 101,285 + MPMX19_00094 0.62 -0.5 101,286 - MPMX19_00094 0.62 +0.5 101,286 - MPMX19_00094 0.62 +0.6 101,286 - MPMX19_00094 0.62 -0.8 101,384 + -0.1 101,384 + -0.0 101,384 + -1.3 101,384 + -0.8 101,384 + +0.4 101,385 - -0.8 101,385 - -0.8 101,385 - -0.3 101,466 - +0.3 101,466 - +0.2 101,466 - -0.0 101,473 - +1.4 101,473 - +0.8 101,514 + -0.8 101,514 + +1.6 101,514 + -1.9 101,514 + +0.9 101,515 - -0.4 101,515 - -0.9 101,516 + -2.8 101,516 + -0.2 101,516 + -1.3 101,517 - -0.1 101,517 - +0.2 101,517 - -0.2 101,529 + -0.5 101,530 - -1.4 101,530 - -0.8 101,531 + +0.2 101,531 + +0.2 101,531 + -2.2 101,532 - -0.2 101,532 - -2.4 101,532 - +0.4 101,542 - -0.2 101,554 + -0.4 101,554 + -2.1 101,554 + +0.1 101,555 - +0.2 101,555 - +0.2 101,555 - +0.8 101,555 - -0.3 101,555 - -1.0 101,555 - -0.5 101,570 - +0.2 101,571 + -1.5 101,572 - -0.2 101,745 - +1.2 101,804 + -0.5 101,804 + -0.3 101,804 + +0.3 101,804 + -0.2 101,804 + +1.2 101,804 + -0.2 101,804 + -1.8 101,804 + -0.5 101,805 - -0.2 101,805 - +0.2 101,805 - -0.4 101,849 + -1.7 101,849 + +0.5 101,849 + +0.7 101,849 + +0.7 101,849 + +0.2 101,849 + -0.8 101,849 + +0.6 101,849 + -1.7 101,850 - -0.9 101,850 - -2.1 101,850 - -0.2 101,850 - -1.0 101,850 - -0.7 101,850 - -0.2 101,850 - -1.4 101,850 - -1.1 101,850 - +0.5 101,850 - +0.3 101,850 - +0.1 101,850 - +0.7 101,850 - -1.8 101,850 - +0.4 102,017 + MPMX19_00095 0.11 +0.5 102,017 + MPMX19_00095 0.11 -0.8 102,018 - MPMX19_00095 0.11 +0.9 102,018 - MPMX19_00095 0.11 +0.4 102,018 - MPMX19_00095 0.11 -0.4 102,233 + MPMX19_00095 0.19 +0.2 102,233 + MPMX19_00095 0.19 -1.4 102,233 + MPMX19_00095 0.19 -0.5 102,233 + MPMX19_00095 0.19 -0.3 102,234 - MPMX19_00095 0.19 -0.4 102,234 - MPMX19_00095 0.19 -2.2 102,234 - MPMX19_00095 0.19 +0.1 102,234 - MPMX19_00095 0.19 +1.3 102,234 - MPMX19_00095 0.19 -1.8 102,234 - MPMX19_00095 0.19 -0.8
Or see this region's nucleotide sequence