Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00088 and MPMX19_00089 are separated by 158 nucleotides MPMX19_00089 and MPMX19_00090 are separated by 51 nucleotides
MPMX19_00088: MPMX19_00088 - HTH-type transcriptional regulator HdfR, at 95,120 to 96,082
_00088
MPMX19_00089: MPMX19_00089 - hypothetical protein, at 96,241 to 96,477
_00089
MPMX19_00090: MPMX19_00090 - L-asparaginase 1, at 96,529 to 97,617
_00090
Position (kb) 96
97 Strain fitness (log2 ratio) -2
-1
0
1
2 at 95.656 kb on - strand, within MPMX19_00088 at 95.727 kb on + strand, within MPMX19_00088 at 95.728 kb on - strand, within MPMX19_00088 at 95.728 kb on - strand, within MPMX19_00088 at 95.775 kb on + strand, within MPMX19_00088 at 95.775 kb on + strand, within MPMX19_00088 at 95.775 kb on + strand, within MPMX19_00088 at 95.775 kb on + strand, within MPMX19_00088 at 95.775 kb on + strand, within MPMX19_00088 at 95.776 kb on - strand, within MPMX19_00088 at 95.776 kb on - strand, within MPMX19_00088 at 95.871 kb on + strand, within MPMX19_00088 at 95.872 kb on - strand, within MPMX19_00088 at 95.872 kb on - strand, within MPMX19_00088 at 95.872 kb on - strand, within MPMX19_00088 at 95.872 kb on - strand, within MPMX19_00088 at 95.872 kb on - strand, within MPMX19_00088 at 95.872 kb on - strand, within MPMX19_00088 at 95.872 kb on - strand, within MPMX19_00088 at 95.872 kb on - strand, within MPMX19_00088 at 96.106 kb on + strand at 96.106 kb on + strand at 96.106 kb on + strand at 96.107 kb on - strand at 96.107 kb on - strand at 96.107 kb on - strand at 96.107 kb on - strand at 96.107 kb on - strand at 96.107 kb on - strand at 96.107 kb on - strand at 96.168 kb on + strand at 96.168 kb on + strand at 96.168 kb on + strand at 96.168 kb on + strand at 96.168 kb on + strand at 96.169 kb on - strand at 96.175 kb on + strand at 96.175 kb on + strand at 96.175 kb on + strand at 96.349 kb on + strand, within MPMX19_00089 at 96.349 kb on + strand, within MPMX19_00089 at 96.349 kb on + strand, within MPMX19_00089 at 96.350 kb on - strand, within MPMX19_00089 at 96.350 kb on - strand, within MPMX19_00089 at 96.350 kb on - strand, within MPMX19_00089 at 96.350 kb on - strand, within MPMX19_00089 at 96.475 kb on + strand at 96.475 kb on + strand at 96.475 kb on + strand at 96.475 kb on + strand at 96.476 kb on - strand at 96.476 kb on - strand at 96.476 kb on - strand at 96.476 kb on - strand at 96.476 kb on - strand at 96.476 kb on - strand at 96.476 kb on - strand at 96.476 kb on - strand at 96.476 kb on - strand at 96.491 kb on + strand at 96.491 kb on + strand at 96.492 kb on - strand at 96.492 kb on - strand at 96.506 kb on - strand at 96.506 kb on - strand at 96.506 kb on - strand at 96.506 kb on - strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.509 kb on + strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.510 kb on - strand at 96.541 kb on + strand at 96.541 kb on + strand at 96.541 kb on + strand at 96.541 kb on + strand at 96.541 kb on + strand at 96.541 kb on + strand at 96.541 kb on + strand at 96.541 kb on + strand at 96.541 kb on + strand at 96.541 kb on + strand at 96.541 kb on + strand at 96.541 kb on + strand at 96.541 kb on + strand at 96.541 kb on + strand at 96.541 kb on + strand at 96.541 kb on + strand at 96.541 kb on + strand at 96.541 kb on + strand at 96.541 kb on + strand at 96.541 kb on + strand at 96.541 kb on + strand at 96.541 kb on + strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.542 kb on - strand at 96.550 kb on + strand at 96.550 kb on + strand at 96.550 kb on + strand at 96.550 kb on + strand at 96.550 kb on + strand at 96.550 kb on + strand at 96.550 kb on + strand at 96.550 kb on + strand at 96.550 kb on + strand at 96.551 kb on - strand at 96.551 kb on - strand at 96.551 kb on - strand at 96.551 kb on - strand at 96.551 kb on - strand at 96.673 kb on + strand, within MPMX19_00090 at 96.674 kb on - strand, within MPMX19_00090 at 96.778 kb on + strand, within MPMX19_00090 at 96.778 kb on + strand, within MPMX19_00090 at 96.779 kb on - strand, within MPMX19_00090 at 96.779 kb on - strand, within MPMX19_00090 at 96.779 kb on - strand, within MPMX19_00090 at 96.787 kb on + strand, within MPMX19_00090 at 96.787 kb on + strand, within MPMX19_00090 at 96.787 kb on + strand, within MPMX19_00090 at 96.787 kb on + strand, within MPMX19_00090 at 96.787 kb on + strand, within MPMX19_00090 at 96.787 kb on + strand, within MPMX19_00090 at 96.787 kb on + strand, within MPMX19_00090 at 96.787 kb on + strand, within MPMX19_00090 at 96.787 kb on + strand, within MPMX19_00090 at 96.788 kb on - strand, within MPMX19_00090 at 96.788 kb on - strand, within MPMX19_00090 at 96.788 kb on - strand, within MPMX19_00090 at 96.788 kb on - strand, within MPMX19_00090 at 96.788 kb on - strand, within MPMX19_00090 at 96.788 kb on - strand, within MPMX19_00090 at 96.788 kb on - strand, within MPMX19_00090 at 96.788 kb on - strand, within MPMX19_00090 at 96.788 kb on - strand, within MPMX19_00090 at 96.788 kb on - strand, within MPMX19_00090 at 96.788 kb on - strand, within MPMX19_00090 at 96.829 kb on + strand, within MPMX19_00090 at 96.829 kb on + strand, within MPMX19_00090 at 96.829 kb on + strand, within MPMX19_00090 at 96.829 kb on + strand, within MPMX19_00090 at 96.829 kb on + strand, within MPMX19_00090 at 96.829 kb on + strand, within MPMX19_00090 at 96.829 kb on + strand, within MPMX19_00090 at 96.829 kb on + strand, within MPMX19_00090 at 96.830 kb on - strand, within MPMX19_00090 at 96.830 kb on - strand, within MPMX19_00090 at 96.830 kb on - strand, within MPMX19_00090 at 96.830 kb on - strand, within MPMX19_00090 at 96.830 kb on - strand, within MPMX19_00090 at 96.830 kb on - strand, within MPMX19_00090 at 96.830 kb on - strand, within MPMX19_00090 at 96.830 kb on - strand, within MPMX19_00090 at 96.991 kb on + strand, within MPMX19_00090 at 96.991 kb on + strand, within MPMX19_00090 at 96.992 kb on - strand, within MPMX19_00090 at 96.992 kb on - strand, within MPMX19_00090 at 96.992 kb on - strand, within MPMX19_00090 at 96.992 kb on - strand, within MPMX19_00090 at 96.992 kb on - strand, within MPMX19_00090 at 97.193 kb on + strand, within MPMX19_00090 at 97.194 kb on - strand, within MPMX19_00090 at 97.194 kb on - strand, within MPMX19_00090 at 97.246 kb on + strand, within MPMX19_00090 at 97.246 kb on + strand, within MPMX19_00090 at 97.247 kb on - strand, within MPMX19_00090 at 97.247 kb on - strand, within MPMX19_00090 at 97.319 kb on + strand, within MPMX19_00090 at 97.319 kb on + strand, within MPMX19_00090 at 97.319 kb on + strand, within MPMX19_00090 at 97.319 kb on + strand, within MPMX19_00090 at 97.327 kb on + strand, within MPMX19_00090 at 97.327 kb on + strand, within MPMX19_00090 at 97.327 kb on + strand, within MPMX19_00090 at 97.328 kb on - strand, within MPMX19_00090 at 97.328 kb on - strand, within MPMX19_00090 at 97.328 kb on - strand, within MPMX19_00090 at 97.450 kb on + strand, within MPMX19_00090 at 97.450 kb on + strand, within MPMX19_00090 at 97.451 kb on - strand, within MPMX19_00090 at 97.451 kb on - strand, within MPMX19_00090 at 97.451 kb on - strand, within MPMX19_00090 at 97.451 kb on - strand, within MPMX19_00090 at 97.451 kb on - strand, within MPMX19_00090 at 97.451 kb on - strand, within MPMX19_00090 at 97.451 kb on - strand, within MPMX19_00090 at 97.451 kb on - strand, within MPMX19_00090
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 95,656 - MPMX19_00088 0.56 -2.4 95,727 + MPMX19_00088 0.63 -0.6 95,728 - MPMX19_00088 0.63 -0.2 95,728 - MPMX19_00088 0.63 -0.8 95,775 + MPMX19_00088 0.68 -1.8 95,775 + MPMX19_00088 0.68 +0.2 95,775 + MPMX19_00088 0.68 -1.3 95,775 + MPMX19_00088 0.68 +0.0 95,775 + MPMX19_00088 0.68 +0.5 95,776 - MPMX19_00088 0.68 +0.2 95,776 - MPMX19_00088 0.68 +0.0 95,871 + MPMX19_00088 0.78 +1.0 95,872 - MPMX19_00088 0.78 -0.3 95,872 - MPMX19_00088 0.78 +0.2 95,872 - MPMX19_00088 0.78 -1.5 95,872 - MPMX19_00088 0.78 -1.7 95,872 - MPMX19_00088 0.78 -1.7 95,872 - MPMX19_00088 0.78 -0.2 95,872 - MPMX19_00088 0.78 +0.2 95,872 - MPMX19_00088 0.78 +0.2 96,106 + -0.9 96,106 + -1.5 96,106 + +1.5 96,107 - +1.8 96,107 - -1.0 96,107 - -1.2 96,107 - -1.8 96,107 - +0.2 96,107 - +0.8 96,107 - -0.1 96,168 + -0.4 96,168 + -1.5 96,168 + -0.8 96,168 + +1.5 96,168 + -0.1 96,169 - +0.1 96,175 + -1.5 96,175 + +0.2 96,175 + -0.8 96,349 + MPMX19_00089 0.46 -0.9 96,349 + MPMX19_00089 0.46 -1.7 96,349 + MPMX19_00089 0.46 -2.2 96,350 - MPMX19_00089 0.46 -1.5 96,350 - MPMX19_00089 0.46 -0.5 96,350 - MPMX19_00089 0.46 +0.4 96,350 - MPMX19_00089 0.46 -0.7 96,475 + +0.1 96,475 + +0.2 96,475 + -1.7 96,475 + -1.1 96,476 - +0.2 96,476 - +1.8 96,476 - -0.7 96,476 - -0.1 96,476 - +0.0 96,476 - -1.4 96,476 - +0.8 96,476 - +0.4 96,476 - -1.5 96,491 + -0.6 96,491 + -1.9 96,492 - -1.5 96,492 - +0.1 96,506 - -0.9 96,506 - -0.7 96,506 - -0.7 96,506 - -1.8 96,509 + +0.5 96,509 + +0.0 96,509 + +0.6 96,509 + -1.5 96,509 + +0.2 96,509 + -0.2 96,509 + -1.5 96,509 + -2.1 96,509 + +0.5 96,509 + -0.5 96,509 + -1.3 96,509 + -0.1 96,509 + -2.0 96,509 + +0.1 96,509 + +0.8 96,509 + -1.0 96,509 + -0.7 96,509 + -0.5 96,509 + -2.2 96,509 + -1.1 96,509 + -1.6 96,509 + -0.2 96,509 + -1.6 96,509 + -1.0 96,510 - -1.3 96,510 - -0.5 96,510 - -0.5 96,510 - -0.3 96,510 - -0.5 96,510 - -0.6 96,510 - -0.0 96,510 - -0.8 96,510 - -0.2 96,510 - -0.1 96,510 - +0.8 96,510 - -0.2 96,510 - +0.3 96,510 - -0.1 96,510 - +0.8 96,510 - -0.1 96,510 - +0.7 96,510 - -0.9 96,510 - -1.8 96,510 - +0.7 96,510 - +0.5 96,510 - +1.4 96,510 - -0.7 96,510 - +0.8 96,510 - +0.4 96,510 - -0.7 96,510 - -1.6 96,541 + -0.9 96,541 + +0.5 96,541 + -0.2 96,541 + +0.3 96,541 + -1.7 96,541 + -2.0 96,541 + -0.1 96,541 + +0.2 96,541 + +0.7 96,541 + -0.5 96,541 + -1.0 96,541 + +0.3 96,541 + +0.6 96,541 + -0.3 96,541 + -0.6 96,541 + +0.3 96,541 + -0.8 96,541 + -1.4 96,541 + -1.9 96,541 + +0.8 96,541 + +1.1 96,541 + -0.9 96,542 - +0.2 96,542 - -1.0 96,542 - -0.0 96,542 - +0.3 96,542 - -0.0 96,542 - -0.3 96,542 - -0.4 96,542 - -0.2 96,542 - -0.8 96,542 - +1.6 96,542 - -1.2 96,542 - -0.4 96,542 - -0.1 96,542 - -0.4 96,542 - -1.4 96,542 - +0.9 96,542 - -0.5 96,542 - -0.3 96,542 - +1.2 96,542 - -0.5 96,542 - -0.0 96,542 - -0.0 96,542 - -0.3 96,542 - +1.8 96,542 - -0.1 96,542 - -0.3 96,542 - -0.2 96,542 - +0.3 96,542 - -0.0 96,550 + -1.5 96,550 + +0.0 96,550 + -0.9 96,550 + -1.1 96,550 + +0.5 96,550 + -1.0 96,550 + -0.4 96,550 + +0.3 96,550 + -0.1 96,551 - +0.2 96,551 - -0.6 96,551 - -2.0 96,551 - +0.9 96,551 - -1.6 96,673 + MPMX19_00090 0.13 +2.0 96,674 - MPMX19_00090 0.13 -0.2 96,778 + MPMX19_00090 0.23 -1.9 96,778 + MPMX19_00090 0.23 +0.1 96,779 - MPMX19_00090 0.23 +0.6 96,779 - MPMX19_00090 0.23 -1.2 96,779 - MPMX19_00090 0.23 -0.9 96,787 + MPMX19_00090 0.24 +0.8 96,787 + MPMX19_00090 0.24 -0.8 96,787 + MPMX19_00090 0.24 -0.5 96,787 + MPMX19_00090 0.24 -1.8 96,787 + MPMX19_00090 0.24 -0.2 96,787 + MPMX19_00090 0.24 -0.3 96,787 + MPMX19_00090 0.24 +0.2 96,787 + MPMX19_00090 0.24 -1.3 96,787 + MPMX19_00090 0.24 -0.7 96,788 - MPMX19_00090 0.24 -0.5 96,788 - MPMX19_00090 0.24 -0.3 96,788 - MPMX19_00090 0.24 -1.5 96,788 - MPMX19_00090 0.24 -1.9 96,788 - MPMX19_00090 0.24 -0.7 96,788 - MPMX19_00090 0.24 -0.3 96,788 - MPMX19_00090 0.24 -0.8 96,788 - MPMX19_00090 0.24 +1.9 96,788 - MPMX19_00090 0.24 +0.1 96,788 - MPMX19_00090 0.24 -0.2 96,788 - MPMX19_00090 0.24 -1.0 96,829 + MPMX19_00090 0.28 +1.4 96,829 + MPMX19_00090 0.28 +0.5 96,829 + MPMX19_00090 0.28 -0.6 96,829 + MPMX19_00090 0.28 +0.3 96,829 + MPMX19_00090 0.28 -0.8 96,829 + MPMX19_00090 0.28 -0.0 96,829 + MPMX19_00090 0.28 +0.2 96,829 + MPMX19_00090 0.28 -0.8 96,830 - MPMX19_00090 0.28 -1.7 96,830 - MPMX19_00090 0.28 -1.2 96,830 - MPMX19_00090 0.28 +0.3 96,830 - MPMX19_00090 0.28 -0.0 96,830 - MPMX19_00090 0.28 +0.6 96,830 - MPMX19_00090 0.28 -0.9 96,830 - MPMX19_00090 0.28 +0.1 96,830 - MPMX19_00090 0.28 -0.5 96,991 + MPMX19_00090 0.42 +0.7 96,991 + MPMX19_00090 0.42 -0.5 96,992 - MPMX19_00090 0.43 +0.2 96,992 - MPMX19_00090 0.43 -1.0 96,992 - MPMX19_00090 0.43 -1.4 96,992 - MPMX19_00090 0.43 +0.9 96,992 - MPMX19_00090 0.43 -0.8 97,193 + MPMX19_00090 0.61 -1.0 97,194 - MPMX19_00090 0.61 -1.4 97,194 - MPMX19_00090 0.61 +0.1 97,246 + MPMX19_00090 0.66 +1.1 97,246 + MPMX19_00090 0.66 +0.1 97,247 - MPMX19_00090 0.66 +0.1 97,247 - MPMX19_00090 0.66 -0.7 97,319 + MPMX19_00090 0.73 -0.7 97,319 + MPMX19_00090 0.73 -2.0 97,319 + MPMX19_00090 0.73 -0.7 97,319 + MPMX19_00090 0.73 +0.6 97,327 + MPMX19_00090 0.73 -0.7 97,327 + MPMX19_00090 0.73 -0.1 97,327 + MPMX19_00090 0.73 -0.7 97,328 - MPMX19_00090 0.73 -0.4 97,328 - MPMX19_00090 0.73 -2.5 97,328 - MPMX19_00090 0.73 -1.9 97,450 + MPMX19_00090 0.85 -0.0 97,450 + MPMX19_00090 0.85 -0.4 97,451 - MPMX19_00090 0.85 -0.1 97,451 - MPMX19_00090 0.85 -1.0 97,451 - MPMX19_00090 0.85 -0.9 97,451 - MPMX19_00090 0.85 -0.7 97,451 - MPMX19_00090 0.85 +0.2 97,451 - MPMX19_00090 0.85 -0.2 97,451 - MPMX19_00090 0.85 -0.8 97,451 - MPMX19_00090 0.85 +0.1
Or see this region's nucleotide sequence