Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00036

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_00034 and MPMX19_00035 are separated by 26 nucleotidesMPMX19_00035 and MPMX19_00036 are separated by 13 nucleotidesMPMX19_00036 and MPMX19_00037 overlap by 4 nucleotidesMPMX19_00037 and MPMX19_00038 are separated by 170 nucleotides MPMX19_00034: MPMX19_00034 - hypothetical protein, at 39,227 to 39,724 _00034 MPMX19_00035: MPMX19_00035 - hypothetical protein, at 39,751 to 40,218 _00035 MPMX19_00036: MPMX19_00036 - hypothetical protein, at 40,232 to 40,786 _00036 MPMX19_00037: MPMX19_00037 - hypothetical protein, at 40,783 to 41,232 _00037 MPMX19_00038: MPMX19_00038 - Transcriptional regulator SlyA, at 41,403 to 41,909 _00038 Position (kb) 40 41Strain fitness (log2 ratio) -2 -1 0 1 2at 39.432 kb on - strand, within MPMX19_00034at 39.432 kb on - strand, within MPMX19_00034at 39.532 kb on + strand, within MPMX19_00034at 39.532 kb on + strand, within MPMX19_00034at 39.532 kb on + strand, within MPMX19_00034at 39.533 kb on - strand, within MPMX19_00034at 39.533 kb on - strand, within MPMX19_00034at 39.533 kb on - strand, within MPMX19_00034at 39.533 kb on - strand, within MPMX19_00034at 39.540 kb on + strand, within MPMX19_00034at 39.540 kb on + strand, within MPMX19_00034at 39.540 kb on + strand, within MPMX19_00034at 39.540 kb on + strand, within MPMX19_00034at 39.540 kb on + strand, within MPMX19_00034at 39.540 kb on + strand, within MPMX19_00034at 39.540 kb on + strand, within MPMX19_00034at 39.540 kb on + strand, within MPMX19_00034at 39.540 kb on + strand, within MPMX19_00034at 39.540 kb on + strand, within MPMX19_00034at 39.540 kb on + strand, within MPMX19_00034at 39.540 kb on + strand, within MPMX19_00034at 39.540 kb on + strand, within MPMX19_00034at 39.540 kb on + strand, within MPMX19_00034at 39.540 kb on + strand, within MPMX19_00034at 39.540 kb on + strand, within MPMX19_00034at 39.540 kb on + strand, within MPMX19_00034at 39.540 kb on + strand, within MPMX19_00034at 39.540 kb on + strand, within MPMX19_00034at 39.540 kb on + strand, within MPMX19_00034at 39.540 kb on + strand, within MPMX19_00034at 39.540 kb on + strand, within MPMX19_00034at 39.541 kb on - strand, within MPMX19_00034at 39.541 kb on - strand, within MPMX19_00034at 39.541 kb on - strand, within MPMX19_00034at 39.541 kb on - strand, within MPMX19_00034at 39.541 kb on - strand, within MPMX19_00034at 39.541 kb on - strand, within MPMX19_00034at 39.541 kb on - strand, within MPMX19_00034at 39.541 kb on - strand, within MPMX19_00034at 39.541 kb on - strand, within MPMX19_00034at 39.541 kb on - strand, within MPMX19_00034at 39.541 kb on - strand, within MPMX19_00034at 39.541 kb on - strand, within MPMX19_00034at 39.541 kb on - strand, within MPMX19_00034at 39.541 kb on - strand, within MPMX19_00034at 39.541 kb on - strand, within MPMX19_00034at 39.602 kb on + strand, within MPMX19_00034at 39.602 kb on + strand, within MPMX19_00034at 39.602 kb on + strand, within MPMX19_00034at 39.602 kb on + strand, within MPMX19_00034at 39.603 kb on - strand, within MPMX19_00034at 39.603 kb on - strand, within MPMX19_00034at 39.603 kb on - strand, within MPMX19_00034at 39.603 kb on - strand, within MPMX19_00034at 39.603 kb on - strand, within MPMX19_00034at 39.603 kb on - strand, within MPMX19_00034at 39.722 kb on + strandat 39.722 kb on + strandat 39.734 kb on + strandat 39.734 kb on + strandat 39.734 kb on + strandat 39.734 kb on + strandat 39.734 kb on + strandat 39.735 kb on - strandat 39.735 kb on - strandat 39.735 kb on - strandat 39.735 kb on - strandat 39.735 kb on - strandat 39.735 kb on - strandat 39.735 kb on - strandat 39.906 kb on + strand, within MPMX19_00035at 39.906 kb on + strand, within MPMX19_00035at 39.906 kb on + strand, within MPMX19_00035at 39.906 kb on + strand, within MPMX19_00035at 39.907 kb on - strand, within MPMX19_00035at 39.907 kb on - strand, within MPMX19_00035at 39.953 kb on + strand, within MPMX19_00035at 39.988 kb on + strand, within MPMX19_00035at 39.988 kb on + strand, within MPMX19_00035at 39.988 kb on + strand, within MPMX19_00035at 39.988 kb on + strand, within MPMX19_00035at 39.988 kb on + strand, within MPMX19_00035at 39.988 kb on + strand, within MPMX19_00035at 39.988 kb on + strand, within MPMX19_00035at 39.989 kb on - strand, within MPMX19_00035at 39.989 kb on - strand, within MPMX19_00035at 39.989 kb on - strand, within MPMX19_00035at 39.989 kb on - strand, within MPMX19_00035at 39.989 kb on - strand, within MPMX19_00035at 39.989 kb on - strand, within MPMX19_00035at 39.989 kb on - strand, within MPMX19_00035at 39.989 kb on - strand, within MPMX19_00035at 39.989 kb on - strand, within MPMX19_00035at 39.989 kb on - strand, within MPMX19_00035at 39.989 kb on - strand, within MPMX19_00035at 39.989 kb on - strand, within MPMX19_00035at 39.989 kb on - strand, within MPMX19_00035at 40.015 kb on + strand, within MPMX19_00035at 40.015 kb on + strand, within MPMX19_00035at 40.015 kb on + strand, within MPMX19_00035at 40.015 kb on + strand, within MPMX19_00035at 40.015 kb on + strand, within MPMX19_00035at 40.015 kb on + strand, within MPMX19_00035at 40.016 kb on - strand, within MPMX19_00035at 40.016 kb on - strand, within MPMX19_00035at 40.016 kb on - strand, within MPMX19_00035at 40.016 kb on - strand, within MPMX19_00035at 40.016 kb on - strand, within MPMX19_00035at 40.198 kb on + strandat 40.198 kb on + strandat 40.199 kb on - strandat 40.266 kb on + strandat 40.266 kb on + strandat 40.267 kb on - strandat 40.267 kb on - strandat 40.324 kb on + strand, within MPMX19_00036at 40.325 kb on - strand, within MPMX19_00036at 40.325 kb on - strand, within MPMX19_00036at 40.325 kb on - strand, within MPMX19_00036at 40.325 kb on - strand, within MPMX19_00036at 40.325 kb on - strand, within MPMX19_00036at 40.325 kb on - strand, within MPMX19_00036at 40.325 kb on - strand, within MPMX19_00036at 40.325 kb on - strand, within MPMX19_00036at 40.325 kb on - strand, within MPMX19_00036at 40.325 kb on - strand, within MPMX19_00036at 40.325 kb on - strand, within MPMX19_00036at 40.438 kb on + strand, within MPMX19_00036at 40.438 kb on + strand, within MPMX19_00036at 40.439 kb on - strand, within MPMX19_00036at 40.782 kb on + strandat 40.782 kb on + strandat 40.782 kb on + strandat 40.782 kb on + strandat 40.782 kb on + strandat 40.782 kb on + strandat 40.782 kb on + strandat 40.783 kb on - strandat 40.783 kb on - strandat 40.783 kb on - strandat 40.783 kb on - strandat 40.783 kb on - strandat 40.783 kb on - strandat 40.959 kb on + strand, within MPMX19_00037at 40.959 kb on + strand, within MPMX19_00037at 40.960 kb on - strand, within MPMX19_00037at 40.960 kb on - strand, within MPMX19_00037at 40.979 kb on + strand, within MPMX19_00037at 40.979 kb on + strand, within MPMX19_00037at 40.979 kb on + strand, within MPMX19_00037at 40.979 kb on + strand, within MPMX19_00037at 40.979 kb on + strand, within MPMX19_00037at 40.980 kb on - strand, within MPMX19_00037at 40.980 kb on - strand, within MPMX19_00037at 40.980 kb on - strand, within MPMX19_00037at 41.016 kb on + strand, within MPMX19_00037at 41.016 kb on + strand, within MPMX19_00037at 41.065 kb on + strand, within MPMX19_00037at 41.065 kb on + strand, within MPMX19_00037at 41.065 kb on + strand, within MPMX19_00037at 41.065 kb on + strand, within MPMX19_00037at 41.066 kb on - strand, within MPMX19_00037at 41.066 kb on - strand, within MPMX19_00037at 41.066 kb on - strand, within MPMX19_00037at 41.086 kb on - strand, within MPMX19_00037at 41.103 kb on + strand, within MPMX19_00037at 41.104 kb on - strand, within MPMX19_00037at 41.104 kb on - strand, within MPMX19_00037at 41.137 kb on + strand, within MPMX19_00037at 41.137 kb on + strand, within MPMX19_00037at 41.137 kb on + strand, within MPMX19_00037at 41.137 kb on + strand, within MPMX19_00037at 41.137 kb on + strand, within MPMX19_00037at 41.137 kb on + strand, within MPMX19_00037at 41.137 kb on + strand, within MPMX19_00037at 41.137 kb on + strand, within MPMX19_00037at 41.137 kb on + strand, within MPMX19_00037at 41.137 kb on + strand, within MPMX19_00037at 41.137 kb on + strand, within MPMX19_00037at 41.137 kb on + strand, within MPMX19_00037at 41.137 kb on + strand, within MPMX19_00037at 41.137 kb on + strand, within MPMX19_00037at 41.137 kb on + strand, within MPMX19_00037at 41.137 kb on + strand, within MPMX19_00037at 41.137 kb on + strand, within MPMX19_00037at 41.138 kb on - strand, within MPMX19_00037at 41.138 kb on - strand, within MPMX19_00037at 41.138 kb on - strand, within MPMX19_00037at 41.138 kb on - strand, within MPMX19_00037at 41.138 kb on - strand, within MPMX19_00037at 41.138 kb on - strand, within MPMX19_00037at 41.138 kb on - strand, within MPMX19_00037at 41.138 kb on - strand, within MPMX19_00037at 41.138 kb on - strand, within MPMX19_00037at 41.138 kb on - strand, within MPMX19_00037at 41.138 kb on - strand, within MPMX19_00037at 41.138 kb on - strand, within MPMX19_00037at 41.153 kb on + strand, within MPMX19_00037at 41.153 kb on + strand, within MPMX19_00037at 41.170 kb on + strand, within MPMX19_00037at 41.170 kb on + strand, within MPMX19_00037at 41.171 kb on - strand, within MPMX19_00037at 41.287 kb on + strandat 41.287 kb on + strandat 41.287 kb on + strandat 41.287 kb on + strandat 41.287 kb on + strandat 41.287 kb on + strandat 41.287 kb on + strandat 41.287 kb on + strandat 41.287 kb on + strandat 41.287 kb on + strandat 41.287 kb on + strandat 41.287 kb on + strandat 41.287 kb on + strandat 41.287 kb on + strandat 41.287 kb on + strandat 41.288 kb on - strandat 41.288 kb on - strandat 41.288 kb on - strandat 41.288 kb on - strandat 41.288 kb on - strandat 41.314 kb on + strandat 41.314 kb on + strandat 41.314 kb on + strandat 41.314 kb on + strandat 41.314 kb on + strandat 41.314 kb on + strandat 41.315 kb on - strandat 41.315 kb on - strandat 41.315 kb on - strandat 41.315 kb on - strandat 41.315 kb on - strandat 41.315 kb on - strandat 41.315 kb on - strandat 41.404 kb on + strandat 41.404 kb on + strandat 41.404 kb on + strandat 41.404 kb on + strandat 41.404 kb on + strandat 41.404 kb on + strandat 41.404 kb on + strandat 41.405 kb on - strandat 41.405 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
39,432 - MPMX19_00034 0.41 -0.4
39,432 - MPMX19_00034 0.41 -1.8
39,532 + MPMX19_00034 0.61 -0.3
39,532 + MPMX19_00034 0.61 +0.6
39,532 + MPMX19_00034 0.61 +0.4
39,533 - MPMX19_00034 0.61 -0.8
39,533 - MPMX19_00034 0.61 -0.4
39,533 - MPMX19_00034 0.61 -1.4
39,533 - MPMX19_00034 0.61 -1.8
39,540 + MPMX19_00034 0.63 -0.9
39,540 + MPMX19_00034 0.63 +0.6
39,540 + MPMX19_00034 0.63 +0.2
39,540 + MPMX19_00034 0.63 +0.2
39,540 + MPMX19_00034 0.63 -1.4
39,540 + MPMX19_00034 0.63 +0.1
39,540 + MPMX19_00034 0.63 -0.2
39,540 + MPMX19_00034 0.63 +0.8
39,540 + MPMX19_00034 0.63 -0.4
39,540 + MPMX19_00034 0.63 -1.7
39,540 + MPMX19_00034 0.63 +0.0
39,540 + MPMX19_00034 0.63 +0.2
39,540 + MPMX19_00034 0.63 -0.7
39,540 + MPMX19_00034 0.63 -0.5
39,540 + MPMX19_00034 0.63 -0.8
39,540 + MPMX19_00034 0.63 +0.3
39,540 + MPMX19_00034 0.63 -0.6
39,540 + MPMX19_00034 0.63 +0.7
39,540 + MPMX19_00034 0.63 +0.2
39,540 + MPMX19_00034 0.63 -1.9
39,540 + MPMX19_00034 0.63 +0.8
39,540 + MPMX19_00034 0.63 +0.8
39,541 - MPMX19_00034 0.63 +0.6
39,541 - MPMX19_00034 0.63 +0.3
39,541 - MPMX19_00034 0.63 +0.5
39,541 - MPMX19_00034 0.63 -0.0
39,541 - MPMX19_00034 0.63 -0.8
39,541 - MPMX19_00034 0.63 -0.2
39,541 - MPMX19_00034 0.63 +0.5
39,541 - MPMX19_00034 0.63 -2.7
39,541 - MPMX19_00034 0.63 -1.0
39,541 - MPMX19_00034 0.63 -0.6
39,541 - MPMX19_00034 0.63 +0.4
39,541 - MPMX19_00034 0.63 -0.9
39,541 - MPMX19_00034 0.63 -1.4
39,541 - MPMX19_00034 0.63 -0.3
39,541 - MPMX19_00034 0.63 -0.4
39,602 + MPMX19_00034 0.75 -0.9
39,602 + MPMX19_00034 0.75 -1.5
39,602 + MPMX19_00034 0.75 +0.5
39,602 + MPMX19_00034 0.75 -0.1
39,603 - MPMX19_00034 0.76 +0.6
39,603 - MPMX19_00034 0.76 -0.8
39,603 - MPMX19_00034 0.76 -1.0
39,603 - MPMX19_00034 0.76 +0.7
39,603 - MPMX19_00034 0.76 +0.2
39,603 - MPMX19_00034 0.76 -0.5
39,722 + -0.8
39,722 + +0.7
39,734 + +0.2
39,734 + -0.6
39,734 + -0.1
39,734 + +0.4
39,734 + +0.5
39,735 - -0.7
39,735 - +0.8
39,735 - +2.4
39,735 - +0.5
39,735 - -2.6
39,735 - -0.9
39,735 - -0.3
39,906 + MPMX19_00035 0.33 -1.7
39,906 + MPMX19_00035 0.33 +0.8
39,906 + MPMX19_00035 0.33 -0.3
39,906 + MPMX19_00035 0.33 -1.2
39,907 - MPMX19_00035 0.33 +0.3
39,907 - MPMX19_00035 0.33 -0.6
39,953 + MPMX19_00035 0.43 -0.1
39,988 + MPMX19_00035 0.51 -0.5
39,988 + MPMX19_00035 0.51 +1.1
39,988 + MPMX19_00035 0.51 -1.4
39,988 + MPMX19_00035 0.51 -1.7
39,988 + MPMX19_00035 0.51 -0.9
39,988 + MPMX19_00035 0.51 -0.5
39,988 + MPMX19_00035 0.51 -0.2
39,989 - MPMX19_00035 0.51 -0.2
39,989 - MPMX19_00035 0.51 +0.5
39,989 - MPMX19_00035 0.51 -2.0
39,989 - MPMX19_00035 0.51 -0.3
39,989 - MPMX19_00035 0.51 -1.2
39,989 - MPMX19_00035 0.51 +0.4
39,989 - MPMX19_00035 0.51 -0.2
39,989 - MPMX19_00035 0.51 -0.9
39,989 - MPMX19_00035 0.51 -0.8
39,989 - MPMX19_00035 0.51 +0.4
39,989 - MPMX19_00035 0.51 +0.1
39,989 - MPMX19_00035 0.51 -0.2
39,989 - MPMX19_00035 0.51 -0.2
40,015 + MPMX19_00035 0.56 -0.5
40,015 + MPMX19_00035 0.56 -0.5
40,015 + MPMX19_00035 0.56 -2.3
40,015 + MPMX19_00035 0.56 +0.2
40,015 + MPMX19_00035 0.56 +0.2
40,015 + MPMX19_00035 0.56 +0.3
40,016 - MPMX19_00035 0.57 -0.0
40,016 - MPMX19_00035 0.57 +1.2
40,016 - MPMX19_00035 0.57 +0.2
40,016 - MPMX19_00035 0.57 +0.3
40,016 - MPMX19_00035 0.57 -0.4
40,198 + -0.1
40,198 + -1.7
40,199 - -0.5
40,266 + -1.3
40,266 + +0.2
40,267 - -0.5
40,267 - -1.1
40,324 + MPMX19_00036 0.17 -1.2
40,325 - MPMX19_00036 0.17 +0.9
40,325 - MPMX19_00036 0.17 -1.0
40,325 - MPMX19_00036 0.17 +0.1
40,325 - MPMX19_00036 0.17 +1.2
40,325 - MPMX19_00036 0.17 -1.1
40,325 - MPMX19_00036 0.17 -0.4
40,325 - MPMX19_00036 0.17 -0.9
40,325 - MPMX19_00036 0.17 -0.2
40,325 - MPMX19_00036 0.17 +0.2
40,325 - MPMX19_00036 0.17 +0.4
40,325 - MPMX19_00036 0.17 -2.0
40,438 + MPMX19_00036 0.37 +1.5
40,438 + MPMX19_00036 0.37 -2.0
40,439 - MPMX19_00036 0.37 +1.1
40,782 + +0.2
40,782 + -1.4
40,782 + -1.5
40,782 + -0.5
40,782 + +2.1
40,782 + -0.5
40,782 + +0.5
40,783 - -0.1
40,783 - +0.1
40,783 - +0.3
40,783 - -0.5
40,783 - +0.3
40,783 - +1.8
40,959 + MPMX19_00037 0.39 -1.4
40,959 + MPMX19_00037 0.39 +0.2
40,960 - MPMX19_00037 0.39 +0.1
40,960 - MPMX19_00037 0.39 +0.7
40,979 + MPMX19_00037 0.44 -0.7
40,979 + MPMX19_00037 0.44 -0.6
40,979 + MPMX19_00037 0.44 +0.8
40,979 + MPMX19_00037 0.44 -0.9
40,979 + MPMX19_00037 0.44 -0.3
40,980 - MPMX19_00037 0.44 +0.7
40,980 - MPMX19_00037 0.44 -0.5
40,980 - MPMX19_00037 0.44 -1.7
41,016 + MPMX19_00037 0.52 -1.4
41,016 + MPMX19_00037 0.52 -1.4
41,065 + MPMX19_00037 0.63 -1.1
41,065 + MPMX19_00037 0.63 -1.7
41,065 + MPMX19_00037 0.63 +0.4
41,065 + MPMX19_00037 0.63 -1.3
41,066 - MPMX19_00037 0.63 -1.4
41,066 - MPMX19_00037 0.63 -1.5
41,066 - MPMX19_00037 0.63 +0.6
41,086 - MPMX19_00037 0.67 -0.1
41,103 + MPMX19_00037 0.71 -0.1
41,104 - MPMX19_00037 0.71 -0.2
41,104 - MPMX19_00037 0.71 +1.0
41,137 + MPMX19_00037 0.79 -0.3
41,137 + MPMX19_00037 0.79 -0.9
41,137 + MPMX19_00037 0.79 -0.8
41,137 + MPMX19_00037 0.79 -0.5
41,137 + MPMX19_00037 0.79 -0.9
41,137 + MPMX19_00037 0.79 -1.9
41,137 + MPMX19_00037 0.79 -0.5
41,137 + MPMX19_00037 0.79 -1.3
41,137 + MPMX19_00037 0.79 -1.0
41,137 + MPMX19_00037 0.79 +0.2
41,137 + MPMX19_00037 0.79 -1.3
41,137 + MPMX19_00037 0.79 -1.8
41,137 + MPMX19_00037 0.79 -1.4
41,137 + MPMX19_00037 0.79 +0.6
41,137 + MPMX19_00037 0.79 -1.7
41,137 + MPMX19_00037 0.79 +0.4
41,137 + MPMX19_00037 0.79 +0.0
41,138 - MPMX19_00037 0.79 -0.7
41,138 - MPMX19_00037 0.79 -0.8
41,138 - MPMX19_00037 0.79 +0.4
41,138 - MPMX19_00037 0.79 -2.0
41,138 - MPMX19_00037 0.79 +0.5
41,138 - MPMX19_00037 0.79 -1.6
41,138 - MPMX19_00037 0.79 -0.4
41,138 - MPMX19_00037 0.79 -0.4
41,138 - MPMX19_00037 0.79 -0.2
41,138 - MPMX19_00037 0.79 +0.6
41,138 - MPMX19_00037 0.79 +1.8
41,138 - MPMX19_00037 0.79 -0.2
41,153 + MPMX19_00037 0.82 +0.2
41,153 + MPMX19_00037 0.82 -1.1
41,170 + MPMX19_00037 0.86 -0.5
41,170 + MPMX19_00037 0.86 -0.5
41,171 - MPMX19_00037 0.86 -1.5
41,287 + +0.0
41,287 + -0.7
41,287 + +0.1
41,287 + -0.9
41,287 + -2.4
41,287 + -0.0
41,287 + -0.9
41,287 + -0.0
41,287 + +0.1
41,287 + +0.6
41,287 + -1.3
41,287 + -1.4
41,287 + -0.5
41,287 + -1.2
41,287 + +0.5
41,288 - -0.5
41,288 - -1.5
41,288 - -1.0
41,288 - -1.2
41,288 - -1.0
41,314 + -0.6
41,314 + -0.4
41,314 + +0.1
41,314 + -0.3
41,314 + -1.0
41,314 + -1.5
41,315 - -0.1
41,315 - -0.4
41,315 - -0.0
41,315 - -0.2
41,315 - -0.6
41,315 - +0.2
41,315 - -0.4
41,404 + -0.1
41,404 + +1.8
41,404 + +1.0
41,404 + +1.1
41,404 + -0.0
41,404 + +0.8
41,404 + -0.0
41,405 - -0.5
41,405 - -1.4

Or see this region's nucleotide sequence