Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00031

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_00030 and MPMX19_00031 are separated by 115 nucleotidesMPMX19_00031 and MPMX19_00032 are separated by 96 nucleotides MPMX19_00030: MPMX19_00030 - D-inositol-3-phosphate glycosyltransferase, at 35,151 to 36,401 _00030 MPMX19_00031: MPMX19_00031 - hypothetical protein, at 36,517 to 37,311 _00031 MPMX19_00032: MPMX19_00032 - tRNA-Ser, at 37,408 to 37,498 _00032 Position (kb) 36 37 38Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 36.517 kb on - strandat 36.517 kb on - strandat 36.517 kb on - strandat 36.517 kb on - strandat 36.517 kb on - strandat 36.517 kb on - strandat 36.517 kb on - strandat 36.517 kb on - strandat 36.517 kb on - strandat 36.517 kb on - strandat 36.556 kb on - strandat 36.556 kb on - strandat 36.581 kb on + strandat 36.581 kb on + strandat 36.581 kb on + strandat 36.581 kb on + strandat 36.582 kb on - strandat 36.582 kb on - strandat 36.582 kb on - strandat 36.582 kb on - strandat 36.582 kb on - strandat 36.582 kb on - strandat 36.582 kb on - strandat 36.582 kb on - strandat 36.582 kb on - strandat 36.582 kb on - strandat 36.582 kb on - strandat 36.582 kb on - strandat 36.582 kb on - strandat 36.582 kb on - strandat 36.587 kb on - strandat 36.587 kb on - strandat 36.587 kb on - strandat 36.587 kb on - strandat 36.587 kb on - strandat 36.587 kb on - strandat 36.587 kb on - strandat 36.733 kb on + strand, within MPMX19_00031at 36.733 kb on + strand, within MPMX19_00031at 36.733 kb on + strand, within MPMX19_00031at 36.733 kb on + strand, within MPMX19_00031at 36.733 kb on + strand, within MPMX19_00031at 37.592 kb on - strandat 37.592 kb on - strandat 37.592 kb on - strandat 37.614 kb on + strandat 37.615 kb on - strandat 37.630 kb on - strandat 37.663 kb on + strandat 37.690 kb on + strandat 37.690 kb on + strandat 37.690 kb on + strandat 37.690 kb on + strandat 37.690 kb on + strandat 37.690 kb on + strandat 37.690 kb on + strandat 37.690 kb on + strandat 37.690 kb on + strandat 37.691 kb on - strandat 37.691 kb on - strandat 37.691 kb on - strandat 37.691 kb on - strandat 37.691 kb on - strandat 37.691 kb on - strandat 37.691 kb on - strandat 37.691 kb on - strandat 37.705 kb on - strandat 37.705 kb on - strandat 37.705 kb on - strandat 37.705 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
36,517 - +0.6
36,517 - +0.1
36,517 - -0.2
36,517 - +1.8
36,517 - +0.8
36,517 - +0.0
36,517 - +0.4
36,517 - -0.2
36,517 - -1.5
36,517 - -0.6
36,556 - +0.3
36,556 - -1.5
36,581 + -0.5
36,581 + -0.5
36,581 + -1.6
36,581 + +1.1
36,582 - +0.1
36,582 - -0.8
36,582 - -1.0
36,582 - +0.8
36,582 - -0.7
36,582 - -0.4
36,582 - +1.2
36,582 - +1.1
36,582 - -1.5
36,582 - +0.1
36,582 - -0.0
36,582 - +0.6
36,582 - -1.2
36,582 - -2.8
36,587 - -0.9
36,587 - -2.0
36,587 - -0.9
36,587 - -0.5
36,587 - -0.8
36,587 - -0.2
36,587 - -0.5
36,733 + MPMX19_00031 0.27 -2.0
36,733 + MPMX19_00031 0.27 -0.5
36,733 + MPMX19_00031 0.27 -0.2
36,733 + MPMX19_00031 0.27 -0.8
36,733 + MPMX19_00031 0.27 -1.3
37,592 - -0.5
37,592 - +0.3
37,592 - +1.1
37,614 + -0.4
37,615 - +1.2
37,630 - -0.2
37,663 + -0.8
37,690 + +0.5
37,690 + -2.2
37,690 + -0.6
37,690 + +0.4
37,690 + -0.2
37,690 + -0.7
37,690 + +0.6
37,690 + -0.1
37,690 + -0.4
37,691 - -2.8
37,691 - +0.5
37,691 - -1.0
37,691 - +0.6
37,691 - +0.8
37,691 - -0.8
37,691 - -0.5
37,691 - +0.1
37,705 - -0.5
37,705 - +2.2
37,705 - +1.4
37,705 - -1.0

Or see this region's nucleotide sequence