Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00030

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_00028 and MPMX19_00029 are separated by 62 nucleotidesMPMX19_00029 and MPMX19_00030 are separated by 56 nucleotidesMPMX19_00030 and MPMX19_00031 are separated by 115 nucleotides MPMX19_00028: MPMX19_00028 - hypothetical protein, at 33,836 to 34,153 _00028 MPMX19_00029: MPMX19_00029 - Phosphoglycolate phosphatase, at 34,216 to 35,094 _00029 MPMX19_00030: MPMX19_00030 - D-inositol-3-phosphate glycosyltransferase, at 35,151 to 36,401 _00030 MPMX19_00031: MPMX19_00031 - hypothetical protein, at 36,517 to 37,311 _00031 Position (kb) 35 36 37Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 34.164 kb on + strandat 34.164 kb on + strandat 34.164 kb on + strandat 34.164 kb on + strandat 34.164 kb on + strandat 34.165 kb on - strandat 34.165 kb on - strandat 34.165 kb on - strandat 34.165 kb on - strandat 34.165 kb on - strandat 34.165 kb on - strandat 34.165 kb on - strandat 34.165 kb on - strandat 34.165 kb on - strandat 34.166 kb on + strandat 34.167 kb on - strandat 34.194 kb on + strandat 34.194 kb on + strandat 34.194 kb on + strandat 34.195 kb on - strandat 34.195 kb on - strandat 34.195 kb on - strandat 34.195 kb on - strandat 34.195 kb on - strandat 34.195 kb on - strandat 34.195 kb on - strandat 36.517 kb on - strandat 36.517 kb on - strandat 36.517 kb on - strandat 36.517 kb on - strandat 36.517 kb on - strandat 36.517 kb on - strandat 36.517 kb on - strandat 36.517 kb on - strandat 36.517 kb on - strandat 36.517 kb on - strandat 36.556 kb on - strandat 36.556 kb on - strandat 36.581 kb on + strandat 36.581 kb on + strandat 36.581 kb on + strandat 36.581 kb on + strandat 36.582 kb on - strandat 36.582 kb on - strandat 36.582 kb on - strandat 36.582 kb on - strandat 36.582 kb on - strandat 36.582 kb on - strandat 36.582 kb on - strandat 36.582 kb on - strandat 36.582 kb on - strandat 36.582 kb on - strandat 36.582 kb on - strandat 36.582 kb on - strandat 36.582 kb on - strandat 36.582 kb on - strandat 36.587 kb on - strandat 36.587 kb on - strandat 36.587 kb on - strandat 36.587 kb on - strandat 36.587 kb on - strandat 36.587 kb on - strandat 36.587 kb on - strandat 36.733 kb on + strand, within MPMX19_00031at 36.733 kb on + strand, within MPMX19_00031at 36.733 kb on + strand, within MPMX19_00031at 36.733 kb on + strand, within MPMX19_00031at 36.733 kb on + strand, within MPMX19_00031

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
34,164 + +0.2
34,164 + -1.8
34,164 + -0.1
34,164 + -0.0
34,164 + -0.2
34,165 - -0.5
34,165 - +0.8
34,165 - +0.0
34,165 - -1.1
34,165 - +1.0
34,165 - -0.7
34,165 - +0.3
34,165 - -1.9
34,165 - -0.6
34,166 + -0.9
34,167 - +0.4
34,194 + -0.3
34,194 + -0.0
34,194 + -0.3
34,195 - +0.8
34,195 - -0.6
34,195 - +1.8
34,195 - +1.6
34,195 - +0.8
34,195 - -0.5
34,195 - -1.2
36,517 - +0.6
36,517 - +0.1
36,517 - -0.2
36,517 - +1.8
36,517 - +0.8
36,517 - +0.0
36,517 - +0.4
36,517 - -0.2
36,517 - -1.5
36,517 - -0.6
36,556 - +0.3
36,556 - -1.5
36,581 + -0.5
36,581 + -0.5
36,581 + -1.6
36,581 + +1.1
36,582 - +0.1
36,582 - -0.8
36,582 - -1.0
36,582 - +0.8
36,582 - -0.7
36,582 - -0.4
36,582 - +1.2
36,582 - +1.1
36,582 - -1.5
36,582 - +0.1
36,582 - -0.0
36,582 - +0.6
36,582 - -1.2
36,582 - -2.8
36,587 - -0.9
36,587 - -2.0
36,587 - -0.9
36,587 - -0.5
36,587 - -0.8
36,587 - -0.2
36,587 - -0.5
36,733 + MPMX19_00031 0.27 -2.0
36,733 + MPMX19_00031 0.27 -0.5
36,733 + MPMX19_00031 0.27 -0.2
36,733 + MPMX19_00031 0.27 -0.8
36,733 + MPMX19_00031 0.27 -1.3

Or see this region's nucleotide sequence