Experiment: NF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00028 and MPMX19_00029 are separated by 62 nucleotides MPMX19_00029 and MPMX19_00030 are separated by 56 nucleotides MPMX19_00030 and MPMX19_00031 are separated by 115 nucleotides
MPMX19_00028: MPMX19_00028 - hypothetical protein, at 33,836 to 34,153
_00028
MPMX19_00029: MPMX19_00029 - Phosphoglycolate phosphatase, at 34,216 to 35,094
_00029
MPMX19_00030: MPMX19_00030 - D-inositol-3-phosphate glycosyltransferase, at 35,151 to 36,401
_00030
MPMX19_00031: MPMX19_00031 - hypothetical protein, at 36,517 to 37,311
_00031
Position (kb)
35
36
37 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 34.164 kb on + strand at 34.164 kb on + strand at 34.164 kb on + strand at 34.164 kb on + strand at 34.164 kb on + strand at 34.165 kb on - strand at 34.165 kb on - strand at 34.165 kb on - strand at 34.165 kb on - strand at 34.165 kb on - strand at 34.165 kb on - strand at 34.165 kb on - strand at 34.165 kb on - strand at 34.165 kb on - strand at 34.166 kb on + strand at 34.167 kb on - strand at 34.194 kb on + strand at 34.194 kb on + strand at 34.194 kb on + strand at 34.195 kb on - strand at 34.195 kb on - strand at 34.195 kb on - strand at 34.195 kb on - strand at 34.195 kb on - strand at 34.195 kb on - strand at 34.195 kb on - strand at 36.517 kb on - strand at 36.517 kb on - strand at 36.517 kb on - strand at 36.517 kb on - strand at 36.517 kb on - strand at 36.517 kb on - strand at 36.517 kb on - strand at 36.517 kb on - strand at 36.517 kb on - strand at 36.517 kb on - strand at 36.556 kb on - strand at 36.556 kb on - strand at 36.581 kb on + strand at 36.581 kb on + strand at 36.581 kb on + strand at 36.581 kb on + strand at 36.582 kb on - strand at 36.582 kb on - strand at 36.582 kb on - strand at 36.582 kb on - strand at 36.582 kb on - strand at 36.582 kb on - strand at 36.582 kb on - strand at 36.582 kb on - strand at 36.582 kb on - strand at 36.582 kb on - strand at 36.582 kb on - strand at 36.582 kb on - strand at 36.582 kb on - strand at 36.582 kb on - strand at 36.587 kb on - strand at 36.587 kb on - strand at 36.587 kb on - strand at 36.587 kb on - strand at 36.587 kb on - strand at 36.587 kb on - strand at 36.587 kb on - strand at 36.733 kb on + strand, within MPMX19_00031 at 36.733 kb on + strand, within MPMX19_00031 at 36.733 kb on + strand, within MPMX19_00031 at 36.733 kb on + strand, within MPMX19_00031 at 36.733 kb on + strand, within MPMX19_00031
Per-strain Table
Position Strand Gene LocusTag Fraction NF remove 34,164 + +0.2 34,164 + -1.8 34,164 + -0.1 34,164 + -0.0 34,164 + -0.2 34,165 - -0.5 34,165 - +0.8 34,165 - +0.0 34,165 - -1.1 34,165 - +1.0 34,165 - -0.7 34,165 - +0.3 34,165 - -1.9 34,165 - -0.6 34,166 + -0.9 34,167 - +0.4 34,194 + -0.3 34,194 + -0.0 34,194 + -0.3 34,195 - +0.8 34,195 - -0.6 34,195 - +1.8 34,195 - +1.6 34,195 - +0.8 34,195 - -0.5 34,195 - -1.2 36,517 - +0.6 36,517 - +0.1 36,517 - -0.2 36,517 - +1.8 36,517 - +0.8 36,517 - +0.0 36,517 - +0.4 36,517 - -0.2 36,517 - -1.5 36,517 - -0.6 36,556 - +0.3 36,556 - -1.5 36,581 + -0.5 36,581 + -0.5 36,581 + -1.6 36,581 + +1.1 36,582 - +0.1 36,582 - -0.8 36,582 - -1.0 36,582 - +0.8 36,582 - -0.7 36,582 - -0.4 36,582 - +1.2 36,582 - +1.1 36,582 - -1.5 36,582 - +0.1 36,582 - -0.0 36,582 - +0.6 36,582 - -1.2 36,582 - -2.8 36,587 - -0.9 36,587 - -2.0 36,587 - -0.9 36,587 - -0.5 36,587 - -0.8 36,587 - -0.2 36,587 - -0.5 36,733 + MPMX19_00031 0.27 -2.0 36,733 + MPMX19_00031 0.27 -0.5 36,733 + MPMX19_00031 0.27 -0.2 36,733 + MPMX19_00031 0.27 -0.8 36,733 + MPMX19_00031 0.27 -1.3
Or see this region's nucleotide sequence