Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00022

Experiment: NF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_00020 and MPMX19_00021 are separated by 112 nucleotidesMPMX19_00021 and MPMX19_00022 are separated by 50 nucleotidesMPMX19_00022 and MPMX19_00023 are separated by 231 nucleotides MPMX19_00020: MPMX19_00020 - hypothetical protein, at 25,609 to 25,728 _00020 MPMX19_00021: MPMX19_00021 - hypothetical protein, at 25,841 to 26,521 _00021 MPMX19_00022: MPMX19_00022 - hypothetical protein, at 26,572 to 27,663 _00022 MPMX19_00023: MPMX19_00023 - Adenosylhomocysteinase, at 27,895 to 29,193 _00023 Position (kb) 26 27 28Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 25.597 kb on + strandat 25.597 kb on + strandat 25.598 kb on - strandat 25.598 kb on - strandat 25.682 kb on + strand, within MPMX19_00020at 25.683 kb on - strand, within MPMX19_00020at 25.683 kb on - strand, within MPMX19_00020at 25.683 kb on - strand, within MPMX19_00020at 25.802 kb on + strandat 25.803 kb on - strandat 25.858 kb on + strandat 25.858 kb on + strandat 25.858 kb on + strandat 25.858 kb on + strandat 25.858 kb on + strandat 25.858 kb on + strandat 25.858 kb on + strandat 25.858 kb on + strandat 25.858 kb on + strandat 25.858 kb on + strandat 25.858 kb on + strandat 25.858 kb on + strandat 25.858 kb on + strandat 25.858 kb on + strandat 25.859 kb on - strandat 25.859 kb on - strandat 25.859 kb on - strandat 25.859 kb on - strandat 25.859 kb on - strandat 25.859 kb on - strandat 25.859 kb on - strandat 25.859 kb on - strandat 25.859 kb on - strandat 25.859 kb on - strandat 25.859 kb on - strandat 25.859 kb on - strandat 25.859 kb on - strandat 25.859 kb on - strandat 26.049 kb on - strand, within MPMX19_00021at 26.049 kb on - strand, within MPMX19_00021at 26.049 kb on - strand, within MPMX19_00021at 26.049 kb on - strand, within MPMX19_00021at 26.052 kb on - strand, within MPMX19_00021at 26.052 kb on - strand, within MPMX19_00021at 26.052 kb on - strand, within MPMX19_00021at 26.052 kb on - strand, within MPMX19_00021at 26.432 kb on + strand, within MPMX19_00021at 26.432 kb on + strand, within MPMX19_00021at 26.432 kb on + strand, within MPMX19_00021at 26.432 kb on + strand, within MPMX19_00021at 26.432 kb on + strand, within MPMX19_00021at 26.432 kb on + strand, within MPMX19_00021at 26.432 kb on + strand, within MPMX19_00021at 26.432 kb on + strand, within MPMX19_00021at 26.433 kb on - strand, within MPMX19_00021at 26.433 kb on - strand, within MPMX19_00021at 26.433 kb on - strand, within MPMX19_00021at 26.433 kb on - strand, within MPMX19_00021at 26.433 kb on - strand, within MPMX19_00021at 26.433 kb on - strand, within MPMX19_00021at 26.433 kb on - strand, within MPMX19_00021at 26.434 kb on + strand, within MPMX19_00021at 26.435 kb on - strand, within MPMX19_00021at 26.435 kb on - strand, within MPMX19_00021at 26.435 kb on - strand, within MPMX19_00021at 26.435 kb on - strand, within MPMX19_00021at 26.435 kb on - strand, within MPMX19_00021at 26.435 kb on - strand, within MPMX19_00021at 26.447 kb on + strand, within MPMX19_00021at 26.447 kb on + strand, within MPMX19_00021at 26.447 kb on + strand, within MPMX19_00021at 26.447 kb on + strand, within MPMX19_00021at 26.447 kb on + strand, within MPMX19_00021at 26.447 kb on + strand, within MPMX19_00021at 26.448 kb on - strand, within MPMX19_00021at 26.448 kb on - strand, within MPMX19_00021at 26.448 kb on - strand, within MPMX19_00021at 26.448 kb on - strand, within MPMX19_00021at 26.448 kb on - strand, within MPMX19_00021at 26.448 kb on - strand, within MPMX19_00021at 26.448 kb on - strand, within MPMX19_00021at 26.702 kb on + strand, within MPMX19_00022at 26.703 kb on - strand, within MPMX19_00022at 26.703 kb on - strand, within MPMX19_00022at 26.703 kb on - strand, within MPMX19_00022at 26.744 kb on + strand, within MPMX19_00022at 26.745 kb on - strand, within MPMX19_00022at 26.745 kb on - strand, within MPMX19_00022at 26.745 kb on - strand, within MPMX19_00022at 26.745 kb on - strand, within MPMX19_00022at 26.867 kb on + strand, within MPMX19_00022at 26.867 kb on + strand, within MPMX19_00022at 26.867 kb on + strand, within MPMX19_00022at 26.867 kb on + strand, within MPMX19_00022at 26.867 kb on + strand, within MPMX19_00022at 26.867 kb on + strand, within MPMX19_00022at 26.867 kb on + strand, within MPMX19_00022at 26.867 kb on + strand, within MPMX19_00022at 26.867 kb on + strand, within MPMX19_00022at 26.867 kb on + strand, within MPMX19_00022at 26.867 kb on + strand, within MPMX19_00022at 26.867 kb on + strand, within MPMX19_00022at 26.867 kb on + strand, within MPMX19_00022at 26.867 kb on + strand, within MPMX19_00022at 26.867 kb on + strand, within MPMX19_00022at 26.867 kb on + strand, within MPMX19_00022at 26.867 kb on + strand, within MPMX19_00022at 26.867 kb on + strand, within MPMX19_00022at 26.867 kb on + strand, within MPMX19_00022at 26.867 kb on + strand, within MPMX19_00022at 26.867 kb on + strand, within MPMX19_00022at 26.867 kb on + strand, within MPMX19_00022at 26.868 kb on - strand, within MPMX19_00022at 26.868 kb on - strand, within MPMX19_00022at 26.868 kb on - strand, within MPMX19_00022at 26.868 kb on - strand, within MPMX19_00022at 26.868 kb on - strand, within MPMX19_00022at 26.868 kb on - strand, within MPMX19_00022at 26.868 kb on - strand, within MPMX19_00022at 26.868 kb on - strand, within MPMX19_00022at 26.868 kb on - strand, within MPMX19_00022at 26.868 kb on - strand, within MPMX19_00022at 26.868 kb on - strand, within MPMX19_00022at 26.868 kb on - strand, within MPMX19_00022at 26.868 kb on - strand, within MPMX19_00022at 26.868 kb on - strand, within MPMX19_00022at 26.868 kb on - strand, within MPMX19_00022at 26.868 kb on - strand, within MPMX19_00022at 26.868 kb on - strand, within MPMX19_00022at 26.868 kb on - strand, within MPMX19_00022at 26.868 kb on - strand, within MPMX19_00022at 26.868 kb on - strand, within MPMX19_00022at 26.868 kb on - strand, within MPMX19_00022at 26.868 kb on - strand, within MPMX19_00022at 26.868 kb on - strand, within MPMX19_00022at 26.868 kb on - strand, within MPMX19_00022at 26.868 kb on - strand, within MPMX19_00022at 26.868 kb on - strand, within MPMX19_00022at 26.868 kb on - strand, within MPMX19_00022at 27.236 kb on + strand, within MPMX19_00022at 27.236 kb on + strand, within MPMX19_00022at 27.236 kb on + strand, within MPMX19_00022at 27.236 kb on + strand, within MPMX19_00022at 27.237 kb on - strand, within MPMX19_00022at 27.278 kb on + strand, within MPMX19_00022at 27.278 kb on + strand, within MPMX19_00022at 27.278 kb on + strand, within MPMX19_00022at 27.278 kb on + strand, within MPMX19_00022at 27.278 kb on + strand, within MPMX19_00022at 27.278 kb on + strand, within MPMX19_00022at 27.278 kb on + strand, within MPMX19_00022at 27.278 kb on + strand, within MPMX19_00022at 27.278 kb on + strand, within MPMX19_00022at 27.278 kb on + strand, within MPMX19_00022at 27.279 kb on - strand, within MPMX19_00022at 27.279 kb on - strand, within MPMX19_00022at 27.279 kb on - strand, within MPMX19_00022at 27.279 kb on - strand, within MPMX19_00022at 27.279 kb on - strand, within MPMX19_00022at 27.279 kb on - strand, within MPMX19_00022at 27.279 kb on - strand, within MPMX19_00022at 27.279 kb on - strand, within MPMX19_00022at 27.279 kb on - strand, within MPMX19_00022at 27.279 kb on - strand, within MPMX19_00022at 27.279 kb on - strand, within MPMX19_00022at 27.279 kb on - strand, within MPMX19_00022at 27.279 kb on - strand, within MPMX19_00022at 27.279 kb on - strand, within MPMX19_00022at 27.374 kb on + strand, within MPMX19_00022at 27.374 kb on + strand, within MPMX19_00022at 27.375 kb on - strand, within MPMX19_00022at 27.375 kb on - strand, within MPMX19_00022at 27.401 kb on + strand, within MPMX19_00022at 27.401 kb on + strand, within MPMX19_00022at 27.401 kb on + strand, within MPMX19_00022at 27.401 kb on + strand, within MPMX19_00022at 27.401 kb on + strand, within MPMX19_00022at 27.401 kb on + strand, within MPMX19_00022at 27.402 kb on - strand, within MPMX19_00022at 27.402 kb on - strand, within MPMX19_00022at 27.402 kb on - strand, within MPMX19_00022at 27.402 kb on - strand, within MPMX19_00022at 27.402 kb on - strand, within MPMX19_00022at 27.402 kb on - strand, within MPMX19_00022at 27.402 kb on - strand, within MPMX19_00022at 27.402 kb on - strand, within MPMX19_00022at 27.402 kb on - strand, within MPMX19_00022at 27.402 kb on - strand, within MPMX19_00022at 27.402 kb on - strand, within MPMX19_00022at 27.428 kb on + strand, within MPMX19_00022at 27.428 kb on + strand, within MPMX19_00022at 27.429 kb on - strand, within MPMX19_00022at 27.554 kb on + strandat 27.554 kb on + strandat 27.555 kb on - strandat 27.555 kb on - strandat 27.652 kb on + strandat 27.652 kb on + strandat 27.652 kb on + strandat 27.652 kb on + strandat 27.652 kb on + strandat 27.653 kb on - strandat 27.653 kb on - strandat 27.653 kb on - strandat 27.653 kb on - strandat 27.674 kb on + strandat 27.674 kb on + strandat 27.674 kb on + strandat 27.674 kb on + strandat 27.674 kb on + strandat 27.675 kb on - strandat 27.675 kb on - strandat 27.695 kb on + strandat 27.696 kb on - strandat 27.761 kb on + strandat 27.761 kb on + strandat 27.761 kb on + strandat 27.762 kb on - strandat 27.762 kb on - strandat 27.767 kb on + strandat 27.768 kb on - strandat 27.773 kb on + strandat 27.774 kb on - strandat 27.801 kb on + strandat 27.801 kb on + strandat 27.801 kb on + strandat 27.801 kb on + strandat 27.801 kb on + strandat 27.801 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NF
remove
25,597 + +0.8
25,597 + -0.0
25,598 - -0.2
25,598 - +0.7
25,682 + MPMX19_00020 0.61 +0.1
25,683 - MPMX19_00020 0.62 -2.0
25,683 - MPMX19_00020 0.62 +1.2
25,683 - MPMX19_00020 0.62 -0.5
25,802 + +0.1
25,803 - +0.5
25,858 + -0.8
25,858 + -1.5
25,858 + +0.4
25,858 + +0.4
25,858 + -0.8
25,858 + -1.5
25,858 + +0.7
25,858 + -0.4
25,858 + -0.5
25,858 + -0.1
25,858 + +1.0
25,858 + -0.7
25,858 + -0.0
25,858 + +1.4
25,859 - -1.7
25,859 - +1.1
25,859 - -0.2
25,859 - +1.2
25,859 - -0.5
25,859 - -1.5
25,859 - +1.2
25,859 - -1.7
25,859 - -1.2
25,859 - -1.0
25,859 - +0.2
25,859 - -1.0
25,859 - -0.6
25,859 - +0.2
26,049 - MPMX19_00021 0.31 +1.0
26,049 - MPMX19_00021 0.31 -0.9
26,049 - MPMX19_00021 0.31 -0.4
26,049 - MPMX19_00021 0.31 -0.3
26,052 - MPMX19_00021 0.31 +0.5
26,052 - MPMX19_00021 0.31 +0.7
26,052 - MPMX19_00021 0.31 -1.0
26,052 - MPMX19_00021 0.31 -0.7
26,432 + MPMX19_00021 0.87 +0.8
26,432 + MPMX19_00021 0.87 +0.3
26,432 + MPMX19_00021 0.87 -0.5
26,432 + MPMX19_00021 0.87 -0.0
26,432 + MPMX19_00021 0.87 +0.8
26,432 + MPMX19_00021 0.87 +0.1
26,432 + MPMX19_00021 0.87 +0.4
26,432 + MPMX19_00021 0.87 -0.9
26,433 - MPMX19_00021 0.87 +0.1
26,433 - MPMX19_00021 0.87 +0.2
26,433 - MPMX19_00021 0.87 -0.2
26,433 - MPMX19_00021 0.87 -2.2
26,433 - MPMX19_00021 0.87 +0.4
26,433 - MPMX19_00021 0.87 +0.2
26,433 - MPMX19_00021 0.87 +0.6
26,434 + MPMX19_00021 0.87 +0.4
26,435 - MPMX19_00021 0.87 -0.4
26,435 - MPMX19_00021 0.87 -0.5
26,435 - MPMX19_00021 0.87 -1.1
26,435 - MPMX19_00021 0.87 +0.2
26,435 - MPMX19_00021 0.87 -1.4
26,435 - MPMX19_00021 0.87 -0.7
26,447 + MPMX19_00021 0.89 -0.8
26,447 + MPMX19_00021 0.89 +0.9
26,447 + MPMX19_00021 0.89 -1.1
26,447 + MPMX19_00021 0.89 +0.8
26,447 + MPMX19_00021 0.89 -0.3
26,447 + MPMX19_00021 0.89 +1.5
26,448 - MPMX19_00021 0.89 -2.4
26,448 - MPMX19_00021 0.89 -0.5
26,448 - MPMX19_00021 0.89 -0.4
26,448 - MPMX19_00021 0.89 -0.2
26,448 - MPMX19_00021 0.89 +0.3
26,448 - MPMX19_00021 0.89 +0.1
26,448 - MPMX19_00021 0.89 -0.5
26,702 + MPMX19_00022 0.12 -0.4
26,703 - MPMX19_00022 0.12 -1.7
26,703 - MPMX19_00022 0.12 +0.2
26,703 - MPMX19_00022 0.12 -1.5
26,744 + MPMX19_00022 0.16 -1.2
26,745 - MPMX19_00022 0.16 +0.6
26,745 - MPMX19_00022 0.16 -0.2
26,745 - MPMX19_00022 0.16 -0.4
26,745 - MPMX19_00022 0.16 -0.5
26,867 + MPMX19_00022 0.27 -2.7
26,867 + MPMX19_00022 0.27 -0.7
26,867 + MPMX19_00022 0.27 +0.2
26,867 + MPMX19_00022 0.27 -0.1
26,867 + MPMX19_00022 0.27 -1.0
26,867 + MPMX19_00022 0.27 -2.2
26,867 + MPMX19_00022 0.27 +0.3
26,867 + MPMX19_00022 0.27 +0.4
26,867 + MPMX19_00022 0.27 +0.2
26,867 + MPMX19_00022 0.27 -0.5
26,867 + MPMX19_00022 0.27 +0.1
26,867 + MPMX19_00022 0.27 -0.4
26,867 + MPMX19_00022 0.27 +0.1
26,867 + MPMX19_00022 0.27 -1.0
26,867 + MPMX19_00022 0.27 -0.9
26,867 + MPMX19_00022 0.27 -1.8
26,867 + MPMX19_00022 0.27 -0.3
26,867 + MPMX19_00022 0.27 -1.1
26,867 + MPMX19_00022 0.27 -0.2
26,867 + MPMX19_00022 0.27 -0.2
26,867 + MPMX19_00022 0.27 -0.3
26,867 + MPMX19_00022 0.27 -1.3
26,868 - MPMX19_00022 0.27 -0.2
26,868 - MPMX19_00022 0.27 +0.6
26,868 - MPMX19_00022 0.27 -0.4
26,868 - MPMX19_00022 0.27 +0.0
26,868 - MPMX19_00022 0.27 +1.4
26,868 - MPMX19_00022 0.27 +0.3
26,868 - MPMX19_00022 0.27 -0.7
26,868 - MPMX19_00022 0.27 -0.2
26,868 - MPMX19_00022 0.27 -0.9
26,868 - MPMX19_00022 0.27 +0.8
26,868 - MPMX19_00022 0.27 -1.6
26,868 - MPMX19_00022 0.27 -0.9
26,868 - MPMX19_00022 0.27 +0.6
26,868 - MPMX19_00022 0.27 +0.2
26,868 - MPMX19_00022 0.27 +0.6
26,868 - MPMX19_00022 0.27 -1.3
26,868 - MPMX19_00022 0.27 +0.2
26,868 - MPMX19_00022 0.27 -1.0
26,868 - MPMX19_00022 0.27 -2.1
26,868 - MPMX19_00022 0.27 -0.6
26,868 - MPMX19_00022 0.27 -0.1
26,868 - MPMX19_00022 0.27 -0.3
26,868 - MPMX19_00022 0.27 -0.8
26,868 - MPMX19_00022 0.27 +0.4
26,868 - MPMX19_00022 0.27 +0.1
26,868 - MPMX19_00022 0.27 -1.0
26,868 - MPMX19_00022 0.27 +0.7
27,236 + MPMX19_00022 0.61 -2.9
27,236 + MPMX19_00022 0.61 -0.1
27,236 + MPMX19_00022 0.61 -0.8
27,236 + MPMX19_00022 0.61 +0.0
27,237 - MPMX19_00022 0.61 -0.0
27,278 + MPMX19_00022 0.65 +0.1
27,278 + MPMX19_00022 0.65 +1.3
27,278 + MPMX19_00022 0.65 -0.5
27,278 + MPMX19_00022 0.65 +0.8
27,278 + MPMX19_00022 0.65 +1.8
27,278 + MPMX19_00022 0.65 -0.2
27,278 + MPMX19_00022 0.65 +0.5
27,278 + MPMX19_00022 0.65 +0.4
27,278 + MPMX19_00022 0.65 -1.1
27,278 + MPMX19_00022 0.65 -0.4
27,279 - MPMX19_00022 0.65 -0.5
27,279 - MPMX19_00022 0.65 +0.6
27,279 - MPMX19_00022 0.65 +0.2
27,279 - MPMX19_00022 0.65 +1.1
27,279 - MPMX19_00022 0.65 -1.0
27,279 - MPMX19_00022 0.65 +0.8
27,279 - MPMX19_00022 0.65 -1.4
27,279 - MPMX19_00022 0.65 -1.2
27,279 - MPMX19_00022 0.65 -0.9
27,279 - MPMX19_00022 0.65 -1.7
27,279 - MPMX19_00022 0.65 +0.4
27,279 - MPMX19_00022 0.65 -0.2
27,279 - MPMX19_00022 0.65 -0.0
27,279 - MPMX19_00022 0.65 -1.1
27,374 + MPMX19_00022 0.73 +0.6
27,374 + MPMX19_00022 0.73 +0.3
27,375 - MPMX19_00022 0.74 -0.1
27,375 - MPMX19_00022 0.74 -1.4
27,401 + MPMX19_00022 0.76 +0.8
27,401 + MPMX19_00022 0.76 +0.2
27,401 + MPMX19_00022 0.76 +0.0
27,401 + MPMX19_00022 0.76 -0.5
27,401 + MPMX19_00022 0.76 -1.1
27,401 + MPMX19_00022 0.76 -0.5
27,402 - MPMX19_00022 0.76 -1.5
27,402 - MPMX19_00022 0.76 -0.9
27,402 - MPMX19_00022 0.76 +0.8
27,402 - MPMX19_00022 0.76 -1.1
27,402 - MPMX19_00022 0.76 -1.4
27,402 - MPMX19_00022 0.76 -0.2
27,402 - MPMX19_00022 0.76 -0.4
27,402 - MPMX19_00022 0.76 +0.3
27,402 - MPMX19_00022 0.76 -1.7
27,402 - MPMX19_00022 0.76 -1.5
27,402 - MPMX19_00022 0.76 -0.7
27,428 + MPMX19_00022 0.78 -0.8
27,428 + MPMX19_00022 0.78 +0.8
27,429 - MPMX19_00022 0.78 -0.7
27,554 + -1.4
27,554 + -1.6
27,555 - -0.9
27,555 - -1.1
27,652 + -0.2
27,652 + +0.5
27,652 + -1.5
27,652 + -0.4
27,652 + -0.7
27,653 - -0.8
27,653 - -0.7
27,653 - +0.1
27,653 - -0.6
27,674 + -0.5
27,674 + +1.3
27,674 + +0.2
27,674 + -1.1
27,674 + -0.3
27,675 - -0.8
27,675 - -0.7
27,695 + +0.6
27,696 - +0.8
27,761 + +1.4
27,761 + -0.4
27,761 + -0.9
27,762 - +0.2
27,762 - -0.7
27,767 + -1.3
27,768 - -1.8
27,773 + -1.3
27,774 - -1.0
27,801 + -1.7
27,801 + +0.8
27,801 + -0.8
27,801 + +0.7
27,801 + -0.6
27,801 + +0.5

Or see this region's nucleotide sequence