Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_24395 and NOLOHH_24400 are separated by 169 nucleotides NOLOHH_24400 and NOLOHH_24405 are separated by 36 nucleotides NOLOHH_24405 and NOLOHH_24410 are separated by 68 nucleotides
NOLOHH_24395: NOLOHH_24395 - PixF protein, at 25,213 to 25,584
_24395
NOLOHH_24400: NOLOHH_24400 - nuclease PIN, at 25,754 to 26,269
_24400
NOLOHH_24405: NOLOHH_24405 - molecular chaperone, at 26,306 to 27,037
_24405
NOLOHH_24410: NOLOHH_24410 - PapC/FimD family outer membrane usher protein, at 27,106 to 29,616
_24410
Position (kb) 26
27
28 Strain fitness (log2 ratio) -1
0
1
2
3 at 25.890 kb on + strand, within NOLOHH_24400 at 25.891 kb on - strand, within NOLOHH_24400 at 25.921 kb on + strand, within NOLOHH_24400 at 26.000 kb on - strand, within NOLOHH_24400 at 26.020 kb on + strand, within NOLOHH_24400 at 26.021 kb on - strand, within NOLOHH_24400 at 26.059 kb on + strand, within NOLOHH_24400 at 26.060 kb on - strand, within NOLOHH_24400 at 26.060 kb on - strand, within NOLOHH_24400 at 26.245 kb on - strand at 26.245 kb on - strand at 26.308 kb on - strand at 26.315 kb on + strand at 26.323 kb on + strand at 26.323 kb on + strand at 26.355 kb on - strand at 26.380 kb on + strand, within NOLOHH_24405 at 26.381 kb on - strand, within NOLOHH_24405 at 26.381 kb on - strand, within NOLOHH_24405 at 26.382 kb on + strand, within NOLOHH_24405 at 26.382 kb on + strand, within NOLOHH_24405 at 26.392 kb on - strand, within NOLOHH_24405 at 26.404 kb on - strand, within NOLOHH_24405 at 26.502 kb on - strand, within NOLOHH_24405 at 26.511 kb on + strand, within NOLOHH_24405 at 26.511 kb on + strand, within NOLOHH_24405 at 26.511 kb on + strand, within NOLOHH_24405 at 26.512 kb on - strand, within NOLOHH_24405 at 26.512 kb on - strand, within NOLOHH_24405 at 26.512 kb on - strand, within NOLOHH_24405 at 26.515 kb on - strand, within NOLOHH_24405 at 26.515 kb on - strand, within NOLOHH_24405 at 26.602 kb on + strand, within NOLOHH_24405 at 26.616 kb on + strand, within NOLOHH_24405 at 26.627 kb on + strand, within NOLOHH_24405 at 26.628 kb on - strand, within NOLOHH_24405 at 26.665 kb on + strand, within NOLOHH_24405 at 26.764 kb on + strand, within NOLOHH_24405 at 26.764 kb on + strand, within NOLOHH_24405 at 26.765 kb on - strand, within NOLOHH_24405 at 26.765 kb on - strand, within NOLOHH_24405 at 26.868 kb on + strand, within NOLOHH_24405 at 26.975 kb on + strand at 26.976 kb on - strand at 27.079 kb on + strand at 27.079 kb on + strand at 27.080 kb on - strand at 27.099 kb on + strand at 27.099 kb on + strand at 27.100 kb on - strand at 27.100 kb on - strand at 27.352 kb on - strand at 27.479 kb on + strand, within NOLOHH_24410 at 27.480 kb on - strand, within NOLOHH_24410 at 27.480 kb on - strand, within NOLOHH_24410 at 27.480 kb on - strand, within NOLOHH_24410 at 27.480 kb on - strand, within NOLOHH_24410 at 27.731 kb on + strand, within NOLOHH_24410 at 27.731 kb on + strand, within NOLOHH_24410 at 27.732 kb on - strand, within NOLOHH_24410 at 27.735 kb on - strand, within NOLOHH_24410 at 27.798 kb on - strand, within NOLOHH_24410 at 27.798 kb on - strand, within NOLOHH_24410 at 27.830 kb on + strand, within NOLOHH_24410 at 27.830 kb on + strand, within NOLOHH_24410 at 27.876 kb on - strand, within NOLOHH_24410 at 27.876 kb on - strand, within NOLOHH_24410 at 27.979 kb on - strand, within NOLOHH_24410 at 28.025 kb on + strand, within NOLOHH_24410 at 28.025 kb on + strand, within NOLOHH_24410 at 28.026 kb on - strand, within NOLOHH_24410 at 28.026 kb on - strand, within NOLOHH_24410 at 28.026 kb on - strand, within NOLOHH_24410 at 28.028 kb on + strand, within NOLOHH_24410 at 28.029 kb on - strand, within NOLOHH_24410
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 25,890 + NOLOHH_24400 0.26 -0.3 25,891 - NOLOHH_24400 0.27 -1.3 25,921 + NOLOHH_24400 0.32 -0.1 26,000 - NOLOHH_24400 0.48 +2.3 26,020 + NOLOHH_24400 0.52 +0.1 26,021 - NOLOHH_24400 0.52 +1.3 26,059 + NOLOHH_24400 0.59 -0.4 26,060 - NOLOHH_24400 0.59 +0.7 26,060 - NOLOHH_24400 0.59 -0.3 26,245 - -0.9 26,245 - +0.1 26,308 - +3.0 26,315 + -0.9 26,323 + +0.7 26,323 + +1.8 26,355 - +1.3 26,380 + NOLOHH_24405 0.10 +1.1 26,381 - NOLOHH_24405 0.10 +0.7 26,381 - NOLOHH_24405 0.10 -0.1 26,382 + NOLOHH_24405 0.10 +0.4 26,382 + NOLOHH_24405 0.10 -0.6 26,392 - NOLOHH_24405 0.12 +0.7 26,404 - NOLOHH_24405 0.13 +0.4 26,502 - NOLOHH_24405 0.27 +0.2 26,511 + NOLOHH_24405 0.28 -0.5 26,511 + NOLOHH_24405 0.28 -0.0 26,511 + NOLOHH_24405 0.28 -0.9 26,512 - NOLOHH_24405 0.28 +0.5 26,512 - NOLOHH_24405 0.28 +0.3 26,512 - NOLOHH_24405 0.28 +0.5 26,515 - NOLOHH_24405 0.29 -0.0 26,515 - NOLOHH_24405 0.29 +0.7 26,602 + NOLOHH_24405 0.40 +0.7 26,616 + NOLOHH_24405 0.42 +1.2 26,627 + NOLOHH_24405 0.44 -0.7 26,628 - NOLOHH_24405 0.44 +0.7 26,665 + NOLOHH_24405 0.49 -0.4 26,764 + NOLOHH_24405 0.63 +0.5 26,764 + NOLOHH_24405 0.63 +0.9 26,765 - NOLOHH_24405 0.63 -0.5 26,765 - NOLOHH_24405 0.63 +1.7 26,868 + NOLOHH_24405 0.77 +0.3 26,975 + -0.5 26,976 - +0.7 27,079 + +1.4 27,079 + +0.7 27,080 - +1.7 27,099 + +0.7 27,099 + -0.9 27,100 - +0.1 27,100 - -0.3 27,352 - +0.1 27,479 + NOLOHH_24410 0.15 +1.0 27,480 - NOLOHH_24410 0.15 +0.3 27,480 - NOLOHH_24410 0.15 +0.3 27,480 - NOLOHH_24410 0.15 -0.3 27,480 - NOLOHH_24410 0.15 +1.1 27,731 + NOLOHH_24410 0.25 -1.1 27,731 + NOLOHH_24410 0.25 +0.2 27,732 - NOLOHH_24410 0.25 +0.7 27,735 - NOLOHH_24410 0.25 -0.0 27,798 - NOLOHH_24410 0.28 +0.1 27,798 - NOLOHH_24410 0.28 +1.1 27,830 + NOLOHH_24410 0.29 -0.3 27,830 + NOLOHH_24410 0.29 -0.2 27,876 - NOLOHH_24410 0.31 +0.3 27,876 - NOLOHH_24410 0.31 -0.9 27,979 - NOLOHH_24410 0.35 -1.3 28,025 + NOLOHH_24410 0.37 -1.3 28,025 + NOLOHH_24410 0.37 +2.3 28,026 - NOLOHH_24410 0.37 +0.5 28,026 - NOLOHH_24410 0.37 +0.5 28,026 - NOLOHH_24410 0.37 -0.1 28,028 + NOLOHH_24410 0.37 +0.7 28,029 - NOLOHH_24410 0.37 -0.6
Or see this region's nucleotide sequence