Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ssb and NOLOHH_24295 are separated by 781 nucleotides NOLOHH_24295 and NOLOHH_24300 overlap by 4 nucleotides NOLOHH_24300 and NOLOHH_24305 overlap by 31 nucleotides
NOLOHH_24290: ssb - single-stranded DNA-binding protein, at 9,801 to 10,328
ssb
NOLOHH_24295: NOLOHH_24295 - YffA, at 11,110 to 11,301
_24295
NOLOHH_24300: NOLOHH_24300 - Uncharacterized protein YubJ, at 11,298 to 11,792
_24300
NOLOHH_24305: NOLOHH_24305 - antirestriction protein, at 11,762 to 12,187
_24305
Position (kb)
11
12 Strain fitness (log2 ratio)
-1
0
1 at 10.334 kb on - strand at 10.334 kb on - strand at 10.334 kb on - strand at 10.556 kb on + strand at 10.557 kb on - strand at 10.557 kb on - strand at 10.619 kb on + strand at 10.619 kb on + strand at 10.706 kb on + strand at 11.138 kb on + strand, within NOLOHH_24295 at 11.139 kb on - strand, within NOLOHH_24295 at 11.139 kb on - strand, within NOLOHH_24295 at 11.139 kb on - strand, within NOLOHH_24295 at 11.139 kb on - strand, within NOLOHH_24295 at 11.247 kb on + strand, within NOLOHH_24295 at 11.296 kb on - strand at 11.329 kb on - strand at 11.404 kb on + strand, within NOLOHH_24300 at 11.405 kb on - strand, within NOLOHH_24300 at 11.613 kb on + strand, within NOLOHH_24300 at 11.614 kb on - strand, within NOLOHH_24300 at 11.711 kb on + strand, within NOLOHH_24300 at 11.711 kb on + strand, within NOLOHH_24300 at 11.712 kb on - strand, within NOLOHH_24300 at 11.712 kb on - strand, within NOLOHH_24300 at 11.778 kb on + strand at 11.779 kb on - strand at 11.918 kb on + strand, within NOLOHH_24305 at 11.918 kb on + strand, within NOLOHH_24305 at 11.919 kb on - strand, within NOLOHH_24305 at 12.003 kb on + strand, within NOLOHH_24305 at 12.003 kb on + strand, within NOLOHH_24305 at 12.004 kb on - strand, within NOLOHH_24305 at 12.087 kb on + strand, within NOLOHH_24305 at 12.088 kb on - strand, within NOLOHH_24305 at 12.088 kb on - strand, within NOLOHH_24305 at 12.088 kb on - strand, within NOLOHH_24305 at 12.088 kb on - strand, within NOLOHH_24305 at 12.088 kb on - strand, within NOLOHH_24305 at 12.088 kb on - strand, within NOLOHH_24305 at 12.180 kb on + strand at 12.212 kb on - strand at 12.245 kb on - strand at 12.411 kb on + strand at 12.482 kb on + strand at 12.482 kb on + strand at 12.483 kb on - strand at 12.654 kb on - strand at 12.654 kb on - strand at 12.689 kb on - strand at 12.689 kb on - strand at 12.690 kb on + strand at 12.703 kb on + strand at 12.703 kb on + strand at 12.704 kb on - strand at 12.746 kb on + strand at 12.747 kb on - strand at 12.747 kb on - strand at 12.747 kb on - strand at 12.766 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 10,334 - +0.7 10,334 - +0.7 10,334 - +0.7 10,556 + -0.4 10,557 - +1.3 10,557 - -0.9 10,619 + -0.5 10,619 + +0.1 10,706 + -0.2 11,138 + NOLOHH_24295 0.15 +1.7 11,139 - NOLOHH_24295 0.15 +0.4 11,139 - NOLOHH_24295 0.15 -0.3 11,139 - NOLOHH_24295 0.15 -0.3 11,139 - NOLOHH_24295 0.15 +1.3 11,247 + NOLOHH_24295 0.71 -1.3 11,296 - +0.1 11,329 - -0.9 11,404 + NOLOHH_24300 0.21 -1.3 11,405 - NOLOHH_24300 0.22 -0.9 11,613 + NOLOHH_24300 0.64 -0.0 11,614 - NOLOHH_24300 0.64 +0.1 11,711 + NOLOHH_24300 0.83 -0.0 11,711 + NOLOHH_24300 0.83 +1.7 11,712 - NOLOHH_24300 0.84 +0.7 11,712 - NOLOHH_24300 0.84 +1.3 11,778 + +1.2 11,779 - +1.0 11,918 + NOLOHH_24305 0.37 +0.2 11,918 + NOLOHH_24305 0.37 -0.9 11,919 - NOLOHH_24305 0.37 -0.0 12,003 + NOLOHH_24305 0.57 -0.3 12,003 + NOLOHH_24305 0.57 +0.4 12,004 - NOLOHH_24305 0.57 +1.7 12,087 + NOLOHH_24305 0.76 +0.9 12,088 - NOLOHH_24305 0.77 +1.5 12,088 - NOLOHH_24305 0.77 +0.4 12,088 - NOLOHH_24305 0.77 -0.6 12,088 - NOLOHH_24305 0.77 +0.5 12,088 - NOLOHH_24305 0.77 -1.2 12,088 - NOLOHH_24305 0.77 -0.1 12,180 + +0.0 12,212 - +0.4 12,245 - +0.5 12,411 + +0.7 12,482 + +0.7 12,482 + +0.5 12,483 - +1.0 12,654 - -0.3 12,654 - +0.7 12,689 - +0.7 12,689 - -0.9 12,690 + -1.6 12,703 + -1.3 12,703 + +0.7 12,704 - -1.2 12,746 + -0.5 12,747 - +0.6 12,747 - -0.0 12,747 - +0.0 12,766 + -0.3
Or see this region's nucleotide sequence