Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt potI and potH overlap by 4 nucleotides potH and potG are separated by 9 nucleotides potG and potF are separated by 94 nucleotides
NOLOHH_22315: potI - putrescine ABC transporter permease PotI, at 4,405,135 to 4,405,980
potI
NOLOHH_22320: potH - putrescine ABC transporter permease PotH, at 4,405,977 to 4,406,930
potH
NOLOHH_22325: potG - putrescine ABC transporter ATP-binding subunit PotG, at 4,406,940 to 4,408,073
potG
NOLOHH_22330: potF - spermidine/putrescine ABC transporter substrate-binding protein PotF, at 4,408,168 to 4,409,280
potF
Position (kb)
4406
4407
4408
4409 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4406.091 kb on - strand, within potH at 4406.241 kb on - strand, within potH at 4406.369 kb on - strand, within potH at 4406.461 kb on - strand, within potH at 4406.461 kb on - strand, within potH at 4406.523 kb on + strand, within potH at 4406.524 kb on - strand, within potH at 4406.524 kb on - strand, within potH at 4406.526 kb on + strand, within potH at 4406.527 kb on - strand, within potH at 4406.531 kb on + strand, within potH at 4406.531 kb on + strand, within potH at 4406.549 kb on + strand, within potH at 4406.550 kb on - strand, within potH at 4406.622 kb on + strand, within potH at 4406.635 kb on + strand, within potH at 4406.635 kb on + strand, within potH at 4406.635 kb on + strand, within potH at 4406.687 kb on + strand, within potH at 4406.735 kb on - strand, within potH at 4406.822 kb on - strand, within potH at 4406.882 kb on + strand at 4406.924 kb on + strand at 4406.941 kb on + strand at 4406.942 kb on - strand at 4407.135 kb on - strand, within potG at 4407.298 kb on - strand, within potG at 4407.298 kb on - strand, within potG at 4407.340 kb on + strand, within potG at 4407.362 kb on - strand, within potG at 4407.561 kb on + strand, within potG at 4407.564 kb on + strand, within potG at 4407.564 kb on + strand, within potG at 4407.564 kb on + strand, within potG at 4407.564 kb on + strand, within potG at 4407.758 kb on + strand, within potG at 4407.791 kb on + strand, within potG at 4407.791 kb on + strand, within potG at 4407.808 kb on + strand, within potG at 4407.846 kb on + strand, within potG at 4407.846 kb on + strand, within potG at 4407.846 kb on + strand, within potG at 4407.946 kb on + strand, within potG at 4407.947 kb on - strand, within potG at 4407.947 kb on - strand, within potG at 4407.947 kb on - strand, within potG at 4407.989 kb on - strand at 4408.156 kb on + strand at 4408.157 kb on - strand at 4408.157 kb on - strand at 4408.157 kb on - strand at 4408.157 kb on - strand at 4408.340 kb on + strand, within potF at 4408.341 kb on - strand, within potF at 4408.388 kb on + strand, within potF at 4408.403 kb on + strand, within potF at 4408.881 kb on + strand, within potF at 4408.882 kb on - strand, within potF at 4408.884 kb on - strand, within potF at 4409.066 kb on - strand, within potF
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 4,406,091 - potH NOLOHH_22320 0.12 +0.5 4,406,241 - potH NOLOHH_22320 0.28 -0.7 4,406,369 - potH NOLOHH_22320 0.41 +0.5 4,406,461 - potH NOLOHH_22320 0.51 +0.5 4,406,461 - potH NOLOHH_22320 0.51 +0.3 4,406,523 + potH NOLOHH_22320 0.57 -0.3 4,406,524 - potH NOLOHH_22320 0.57 +0.9 4,406,524 - potH NOLOHH_22320 0.57 +0.1 4,406,526 + potH NOLOHH_22320 0.58 +1.1 4,406,527 - potH NOLOHH_22320 0.58 +0.1 4,406,531 + potH NOLOHH_22320 0.58 +2.1 4,406,531 + potH NOLOHH_22320 0.58 -0.8 4,406,549 + potH NOLOHH_22320 0.60 +0.5 4,406,550 - potH NOLOHH_22320 0.60 -0.1 4,406,622 + potH NOLOHH_22320 0.68 +0.5 4,406,635 + potH NOLOHH_22320 0.69 +0.5 4,406,635 + potH NOLOHH_22320 0.69 +0.5 4,406,635 + potH NOLOHH_22320 0.69 +1.1 4,406,687 + potH NOLOHH_22320 0.74 -0.1 4,406,735 - potH NOLOHH_22320 0.79 -1.1 4,406,822 - potH NOLOHH_22320 0.89 +1.5 4,406,882 + -0.9 4,406,924 + -0.5 4,406,941 + -0.5 4,406,942 - +1.1 4,407,135 - potG NOLOHH_22325 0.17 -0.1 4,407,298 - potG NOLOHH_22325 0.32 +0.5 4,407,298 - potG NOLOHH_22325 0.32 -0.5 4,407,340 + potG NOLOHH_22325 0.35 +1.5 4,407,362 - potG NOLOHH_22325 0.37 -0.5 4,407,561 + potG NOLOHH_22325 0.55 -1.0 4,407,564 + potG NOLOHH_22325 0.55 -0.3 4,407,564 + potG NOLOHH_22325 0.55 -2.1 4,407,564 + potG NOLOHH_22325 0.55 -0.8 4,407,564 + potG NOLOHH_22325 0.55 +0.0 4,407,758 + potG NOLOHH_22325 0.72 +1.0 4,407,791 + potG NOLOHH_22325 0.75 +2.5 4,407,791 + potG NOLOHH_22325 0.75 -1.3 4,407,808 + potG NOLOHH_22325 0.77 +0.1 4,407,846 + potG NOLOHH_22325 0.80 -1.1 4,407,846 + potG NOLOHH_22325 0.80 -1.8 4,407,846 + potG NOLOHH_22325 0.80 -1.5 4,407,946 + potG NOLOHH_22325 0.89 +0.3 4,407,947 - potG NOLOHH_22325 0.89 +0.7 4,407,947 - potG NOLOHH_22325 0.89 -0.7 4,407,947 - potG NOLOHH_22325 0.89 -0.7 4,407,989 - +0.2 4,408,156 + +1.1 4,408,157 - -0.2 4,408,157 - +1.3 4,408,157 - -0.9 4,408,157 - -0.5 4,408,340 + potF NOLOHH_22330 0.15 -0.5 4,408,341 - potF NOLOHH_22330 0.16 -1.1 4,408,388 + potF NOLOHH_22330 0.20 +0.5 4,408,403 + potF NOLOHH_22330 0.21 -0.3 4,408,881 + potF NOLOHH_22330 0.64 +1.5 4,408,882 - potF NOLOHH_22330 0.64 +0.5 4,408,884 - potF NOLOHH_22330 0.64 -1.1 4,409,066 - potF NOLOHH_22330 0.81 +1.5
Or see this region's nucleotide sequence