Strain Fitness in Escherichia coli ECOR27 around NOLOHH_18970

Experiment: K5

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntddpB and ddpC overlap by 4 nucleotidesddpC and dppD overlap by 4 nucleotidesdppD and ddpF overlap by 8 nucleotides NOLOHH_18965: ddpB - putative D,D-dipeptide transport system permease protein DdpB, at 3,727,425 to 3,728,447 ddpB NOLOHH_18970: ddpC - D,D-dipeptide ABC transporter permease, at 3,728,444 to 3,729,340 ddpC NOLOHH_18975: dppD - ABC transporter ATP-binding protein, at 3,729,337 to 3,730,323 dppD NOLOHH_18980: ddpF - putative D,D-dipeptide transport ATP-binding protein DdpF, at 3,730,316 to 3,731,242 ddpF Position (kb) 3728 3729 3730Strain fitness (log2 ratio) -2 -1 0 1at 3727.496 kb on + strandat 3727.614 kb on + strand, within ddpBat 3727.615 kb on - strand, within ddpBat 3727.706 kb on + strand, within ddpBat 3728.166 kb on + strand, within ddpBat 3728.168 kb on + strand, within ddpBat 3728.314 kb on + strand, within ddpBat 3728.565 kb on + strand, within ddpCat 3728.565 kb on + strand, within ddpCat 3728.565 kb on + strand, within ddpCat 3728.954 kb on + strand, within ddpCat 3728.982 kb on + strand, within ddpCat 3728.996 kb on + strand, within ddpCat 3729.002 kb on + strand, within ddpCat 3729.002 kb on + strand, within ddpCat 3729.145 kb on + strand, within ddpCat 3729.209 kb on + strand, within ddpCat 3729.533 kb on + strand, within dppDat 3729.732 kb on + strand, within dppDat 3729.985 kb on - strand, within dppDat 3730.011 kb on + strand, within dppDat 3730.313 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction K5
remove
3,727,496 + +0.4
3,727,614 + ddpB NOLOHH_18965 0.18 -0.6
3,727,615 - ddpB NOLOHH_18965 0.19 -1.2
3,727,706 + ddpB NOLOHH_18965 0.27 +0.4
3,728,166 + ddpB NOLOHH_18965 0.72 +1.4
3,728,168 + ddpB NOLOHH_18965 0.73 +1.4
3,728,314 + ddpB NOLOHH_18965 0.87 -0.2
3,728,565 + ddpC NOLOHH_18970 0.13 +0.4
3,728,565 + ddpC NOLOHH_18970 0.13 +1.4
3,728,565 + ddpC NOLOHH_18970 0.13 -0.2
3,728,954 + ddpC NOLOHH_18970 0.57 +0.7
3,728,982 + ddpC NOLOHH_18970 0.60 +0.4
3,728,996 + ddpC NOLOHH_18970 0.62 +0.4
3,729,002 + ddpC NOLOHH_18970 0.62 -0.1
3,729,002 + ddpC NOLOHH_18970 0.62 +0.4
3,729,145 + ddpC NOLOHH_18970 0.78 +1.4
3,729,209 + ddpC NOLOHH_18970 0.85 -0.6
3,729,533 + dppD NOLOHH_18975 0.20 +1.0
3,729,732 + dppD NOLOHH_18975 0.40 +0.8
3,729,985 - dppD NOLOHH_18975 0.66 -2.4
3,730,011 + dppD NOLOHH_18975 0.68 -1.2
3,730,313 + +1.4

Or see this region's nucleotide sequence