Strain Fitness in Escherichia coli ECOR27 around NOLOHH_17605

Experiment: K5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpheS and pheT are separated by 14 nucleotidespheT and NOLOHH_17610 are separated by 4 nucleotidesNOLOHH_17610 and btuC are separated by 100 nucleotides NOLOHH_17600: pheS - phenylalanine--tRNA ligase subunit alpha, at 3,454,275 to 3,455,258 pheS NOLOHH_17605: pheT - phenylalanine--tRNA ligase subunit beta, at 3,455,273 to 3,457,660 pheT NOLOHH_17610: NOLOHH_17610 - Integration host factor subunit alpha, at 3,457,665 to 3,457,964 _17610 NOLOHH_17620: btuC - vitamin B12 ABC transporter permease BtuC, at 3,458,065 to 3,459,045 btuC Position (kb) 3455 3456 3457 3458Strain fitness (log2 ratio) -1 0 1 2at 3457.972 kb on + strandat 3457.972 kb on + strandat 3458.334 kb on - strand, within btuCat 3458.453 kb on + strand, within btuCat 3458.462 kb on + strand, within btuCat 3458.593 kb on + strand, within btuCat 3458.593 kb on + strand, within btuC

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Per-strain Table

Position Strand Gene LocusTag Fraction K5
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3,457,972 + -1.2
3,457,972 + -0.2
3,458,334 - btuC NOLOHH_17620 0.27 +1.0
3,458,453 + btuC NOLOHH_17620 0.40 +0.4
3,458,462 + btuC NOLOHH_17620 0.40 +1.0
3,458,593 + btuC NOLOHH_17620 0.54 +2.4
3,458,593 + btuC NOLOHH_17620 0.54 -0.2

Or see this region's nucleotide sequence