Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt usg and truA overlap by 1 nucleotides truA and NOLOHH_14310 are separated by 82 nucleotides NOLOHH_14310 and accD are separated by 155 nucleotides
NOLOHH_14300: usg - aspartate-semialdehyde dehydrogenase, at 2,785,343 to 2,786,356
usg
NOLOHH_14305: truA - tRNA pseudouridine(38-40) synthase TruA, at 2,786,356 to 2,787,168
truA
NOLOHH_14310: NOLOHH_14310 - Protein DedA, at 2,787,251 to 2,787,910
_14310
NOLOHH_14315: accD - acetyl-CoA carboxylase, carboxyltransferase subunit beta, at 2,788,066 to 2,788,980
accD
Position (kb)
2787
2788 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2786.316 kb on + strand at 2786.316 kb on + strand at 2786.345 kb on + strand at 2786.351 kb on + strand at 2786.351 kb on + strand at 2786.354 kb on + strand at 2786.354 kb on + strand at 2786.354 kb on + strand at 2786.419 kb on - strand at 2786.419 kb on - strand at 2786.419 kb on - strand at 2786.422 kb on + strand at 2786.422 kb on + strand at 2786.530 kb on - strand, within truA at 2786.663 kb on + strand, within truA at 2786.664 kb on - strand, within truA at 2786.722 kb on + strand, within truA at 2786.889 kb on + strand, within truA at 2786.896 kb on - strand, within truA at 2786.896 kb on - strand, within truA at 2786.896 kb on - strand, within truA at 2786.896 kb on - strand, within truA at 2786.899 kb on - strand, within truA at 2786.899 kb on - strand, within truA at 2786.920 kb on + strand, within truA at 2786.921 kb on - strand, within truA at 2786.930 kb on + strand, within truA at 2786.934 kb on + strand, within truA at 2786.937 kb on + strand, within truA at 2786.955 kb on - strand, within truA at 2786.961 kb on + strand, within truA at 2786.961 kb on + strand, within truA at 2786.974 kb on - strand, within truA at 2787.091 kb on + strand at 2787.092 kb on - strand at 2787.122 kb on - strand at 2787.175 kb on + strand at 2787.175 kb on + strand at 2787.176 kb on - strand at 2787.208 kb on + strand at 2787.208 kb on + strand at 2787.209 kb on - strand at 2787.209 kb on - strand at 2787.209 kb on - strand at 2787.212 kb on + strand at 2787.213 kb on - strand at 2787.213 kb on - strand at 2787.213 kb on - strand at 2787.233 kb on + strand at 2787.242 kb on + strand at 2787.242 kb on + strand at 2787.243 kb on - strand at 2787.251 kb on - strand at 2787.281 kb on - strand at 2787.323 kb on + strand, within NOLOHH_14310 at 2787.324 kb on - strand, within NOLOHH_14310 at 2787.338 kb on + strand, within NOLOHH_14310 at 2787.339 kb on - strand, within NOLOHH_14310 at 2787.466 kb on + strand, within NOLOHH_14310 at 2787.518 kb on + strand, within NOLOHH_14310 at 2787.519 kb on - strand, within NOLOHH_14310 at 2787.519 kb on - strand, within NOLOHH_14310 at 2787.519 kb on - strand, within NOLOHH_14310 at 2787.587 kb on + strand, within NOLOHH_14310 at 2787.725 kb on + strand, within NOLOHH_14310 at 2787.726 kb on - strand, within NOLOHH_14310 at 2787.726 kb on - strand, within NOLOHH_14310 at 2787.768 kb on - strand, within NOLOHH_14310 at 2787.814 kb on + strand, within NOLOHH_14310 at 2787.847 kb on + strand at 2787.870 kb on + strand at 2787.871 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 2,786,316 + -1.2 2,786,316 + -0.6 2,786,345 + -1.2 2,786,351 + -1.2 2,786,351 + -1.2 2,786,354 + -0.2 2,786,354 + +2.4 2,786,354 + -0.0 2,786,419 - -0.6 2,786,419 - -0.6 2,786,419 - +2.0 2,786,422 + +0.4 2,786,422 + -0.2 2,786,530 - truA NOLOHH_14305 0.21 +2.0 2,786,663 + truA NOLOHH_14305 0.38 +0.4 2,786,664 - truA NOLOHH_14305 0.38 +1.4 2,786,722 + truA NOLOHH_14305 0.45 -1.9 2,786,889 + truA NOLOHH_14305 0.66 -1.6 2,786,896 - truA NOLOHH_14305 0.66 +0.4 2,786,896 - truA NOLOHH_14305 0.66 -2.4 2,786,896 - truA NOLOHH_14305 0.66 +0.4 2,786,896 - truA NOLOHH_14305 0.66 -0.6 2,786,899 - truA NOLOHH_14305 0.67 -1.9 2,786,899 - truA NOLOHH_14305 0.67 -0.9 2,786,920 + truA NOLOHH_14305 0.69 +0.4 2,786,921 - truA NOLOHH_14305 0.69 +0.4 2,786,930 + truA NOLOHH_14305 0.71 -1.0 2,786,934 + truA NOLOHH_14305 0.71 +0.4 2,786,937 + truA NOLOHH_14305 0.71 +1.4 2,786,955 - truA NOLOHH_14305 0.74 -1.2 2,786,961 + truA NOLOHH_14305 0.74 +1.0 2,786,961 + truA NOLOHH_14305 0.74 -0.2 2,786,974 - truA NOLOHH_14305 0.76 -1.2 2,787,091 + -2.8 2,787,092 - -1.2 2,787,122 - +0.4 2,787,175 + -1.9 2,787,175 + -0.3 2,787,176 - -1.6 2,787,208 + -0.3 2,787,208 + -0.6 2,787,209 - -1.6 2,787,209 - -1.2 2,787,209 - -2.9 2,787,212 + +0.7 2,787,213 - -1.2 2,787,213 - +0.4 2,787,213 - -1.2 2,787,233 + +0.4 2,787,242 + -0.6 2,787,242 + -1.2 2,787,243 - -2.2 2,787,251 - -1.2 2,787,281 - -2.4 2,787,323 + NOLOHH_14310 0.11 +0.4 2,787,324 - NOLOHH_14310 0.11 -2.6 2,787,338 + NOLOHH_14310 0.13 -0.6 2,787,339 - NOLOHH_14310 0.13 -2.3 2,787,466 + NOLOHH_14310 0.33 -1.2 2,787,518 + NOLOHH_14310 0.40 -3.6 2,787,519 - NOLOHH_14310 0.41 -1.6 2,787,519 - NOLOHH_14310 0.41 -1.6 2,787,519 - NOLOHH_14310 0.41 +0.4 2,787,587 + NOLOHH_14310 0.51 -1.6 2,787,725 + NOLOHH_14310 0.72 -2.6 2,787,726 - NOLOHH_14310 0.72 -0.6 2,787,726 - NOLOHH_14310 0.72 -3.9 2,787,768 - NOLOHH_14310 0.78 -2.2 2,787,814 + NOLOHH_14310 0.85 -3.3 2,787,847 + -2.6 2,787,870 + -1.2 2,787,871 - -2.8
Or see this region's nucleotide sequence