Strain Fitness in Escherichia coli ECOR27 around NOLOHH_13045

Experiment: K5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsrmB and trmN are separated by 131 nucleotidestrmN and nadB overlap by 16 nucleotidesnadB and rpoE are separated by 407 nucleotides NOLOHH_13035: srmB - ATP-dependent RNA helicase SrmB, at 2,524,348 to 2,525,682 srmB NOLOHH_13040: trmN - tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN, at 2,525,814 to 2,526,551 trmN NOLOHH_13045: nadB - L-aspartate oxidase, at 2,526,536 to 2,528,158 nadB NOLOHH_13050: rpoE - RNA polymerase sigma factor RpoE, at 2,528,566 to 2,529,141 rpoE Position (kb) 2526 2527 2528 2529Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2525.552 kb on - strandat 2525.687 kb on + strandat 2525.688 kb on - strandat 2525.688 kb on - strandat 2525.688 kb on - strandat 2525.712 kb on - strandat 2525.712 kb on - strandat 2525.807 kb on + strandat 2525.825 kb on + strandat 2525.826 kb on - strandat 2525.826 kb on - strandat 2526.025 kb on + strand, within trmNat 2526.025 kb on + strand, within trmNat 2526.026 kb on - strand, within trmNat 2526.078 kb on - strand, within trmNat 2526.107 kb on + strand, within trmNat 2526.154 kb on + strand, within trmNat 2526.154 kb on + strand, within trmNat 2526.154 kb on + strand, within trmNat 2526.186 kb on + strand, within trmNat 2526.186 kb on + strand, within trmNat 2526.186 kb on + strand, within trmNat 2526.186 kb on + strand, within trmNat 2526.186 kb on + strand, within trmNat 2526.187 kb on - strand, within trmNat 2526.187 kb on - strand, within trmNat 2526.190 kb on - strand, within trmNat 2526.202 kb on + strand, within trmNat 2526.202 kb on + strand, within trmNat 2526.202 kb on + strand, within trmNat 2526.203 kb on - strand, within trmNat 2526.239 kb on + strand, within trmNat 2526.239 kb on + strand, within trmNat 2526.239 kb on + strand, within trmNat 2526.239 kb on + strand, within trmNat 2526.240 kb on - strand, within trmNat 2526.336 kb on - strand, within trmNat 2526.376 kb on + strand, within trmNat 2526.376 kb on + strand, within trmNat 2526.464 kb on + strand, within trmNat 2526.475 kb on + strand, within trmNat 2526.501 kb on + strandat 2526.514 kb on - strandat 2526.514 kb on - strandat 2526.514 kb on - strandat 2526.514 kb on - strandat 2526.537 kb on + strandat 2526.537 kb on + strandat 2526.537 kb on + strandat 2526.545 kb on + strandat 2526.545 kb on + strandat 2526.545 kb on + strandat 2526.549 kb on + strandat 2526.550 kb on - strandat 2526.550 kb on - strandat 2526.726 kb on + strand, within nadBat 2526.730 kb on - strand, within nadBat 2526.810 kb on + strand, within nadBat 2526.810 kb on + strand, within nadBat 2526.810 kb on + strand, within nadBat 2526.811 kb on - strand, within nadBat 2526.811 kb on - strand, within nadBat 2526.820 kb on + strand, within nadBat 2526.821 kb on - strand, within nadBat 2526.821 kb on - strand, within nadBat 2526.821 kb on - strand, within nadBat 2526.831 kb on - strand, within nadBat 2526.844 kb on + strand, within nadBat 2526.845 kb on - strand, within nadBat 2526.845 kb on - strand, within nadBat 2526.845 kb on - strand, within nadBat 2526.854 kb on + strand, within nadBat 2526.854 kb on + strand, within nadBat 2526.855 kb on - strand, within nadBat 2526.855 kb on - strand, within nadBat 2526.855 kb on - strand, within nadBat 2526.855 kb on - strand, within nadBat 2526.907 kb on + strand, within nadBat 2526.907 kb on + strand, within nadBat 2526.908 kb on - strand, within nadBat 2526.931 kb on + strand, within nadBat 2526.931 kb on + strand, within nadBat 2526.931 kb on + strand, within nadBat 2526.931 kb on + strand, within nadBat 2526.931 kb on + strand, within nadBat 2526.932 kb on - strand, within nadBat 2526.932 kb on - strand, within nadBat 2526.932 kb on - strand, within nadBat 2527.017 kb on - strand, within nadBat 2527.026 kb on + strand, within nadBat 2527.026 kb on + strand, within nadBat 2527.027 kb on - strand, within nadBat 2527.047 kb on + strand, within nadBat 2527.047 kb on + strand, within nadBat 2527.048 kb on - strand, within nadBat 2527.088 kb on + strand, within nadBat 2527.089 kb on - strand, within nadBat 2527.102 kb on + strand, within nadBat 2527.102 kb on + strand, within nadBat 2527.103 kb on - strand, within nadBat 2527.104 kb on + strand, within nadBat 2527.104 kb on + strand, within nadBat 2527.104 kb on + strand, within nadBat 2527.104 kb on + strand, within nadBat 2527.104 kb on + strand, within nadBat 2527.104 kb on + strand, within nadBat 2527.105 kb on - strand, within nadBat 2527.213 kb on + strand, within nadBat 2527.214 kb on - strand, within nadBat 2527.214 kb on - strand, within nadBat 2527.234 kb on + strand, within nadBat 2527.234 kb on + strand, within nadBat 2527.234 kb on + strand, within nadBat 2527.235 kb on - strand, within nadBat 2527.235 kb on - strand, within nadBat 2527.235 kb on - strand, within nadBat 2527.235 kb on - strand, within nadBat 2527.235 kb on - strand, within nadBat 2527.235 kb on - strand, within nadBat 2527.235 kb on - strand, within nadBat 2527.235 kb on - strand, within nadBat 2527.235 kb on - strand, within nadBat 2527.357 kb on - strand, within nadBat 2527.357 kb on - strand, within nadBat 2527.413 kb on + strand, within nadBat 2527.413 kb on + strand, within nadBat 2527.413 kb on + strand, within nadBat 2527.414 kb on - strand, within nadBat 2527.522 kb on - strand, within nadBat 2527.527 kb on + strand, within nadBat 2527.528 kb on - strand, within nadBat 2527.595 kb on - strand, within nadBat 2527.739 kb on + strand, within nadBat 2527.740 kb on - strand, within nadBat 2527.740 kb on - strand, within nadBat 2527.740 kb on - strand, within nadBat 2527.740 kb on - strand, within nadBat 2527.786 kb on + strand, within nadBat 2527.786 kb on + strand, within nadBat 2527.786 kb on + strand, within nadBat 2527.786 kb on + strand, within nadBat 2527.786 kb on + strand, within nadBat 2527.786 kb on + strand, within nadBat 2527.787 kb on - strand, within nadBat 2527.787 kb on - strand, within nadBat 2527.787 kb on - strand, within nadBat 2527.813 kb on - strand, within nadBat 2527.813 kb on - strand, within nadBat 2528.017 kb on - strandat 2528.047 kb on + strandat 2528.047 kb on + strandat 2528.047 kb on + strandat 2528.048 kb on - strandat 2528.051 kb on + strandat 2528.051 kb on + strandat 2528.052 kb on - strandat 2528.052 kb on - strandat 2528.152 kb on + strandat 2528.153 kb on - strandat 2528.197 kb on + strandat 2528.216 kb on + strandat 2528.216 kb on + strandat 2528.216 kb on + strandat 2528.216 kb on + strandat 2528.217 kb on - strandat 2528.217 kb on - strandat 2528.217 kb on - strandat 2528.217 kb on - strandat 2528.217 kb on - strandat 2528.228 kb on - strandat 2528.243 kb on - strandat 2528.307 kb on + strandat 2528.307 kb on + strandat 2528.307 kb on + strandat 2528.336 kb on + strandat 2528.351 kb on + strandat 2528.366 kb on - strandat 2528.366 kb on - strandat 2528.373 kb on + strandat 2528.373 kb on + strandat 2528.373 kb on + strandat 2528.373 kb on + strandat 2528.374 kb on - strandat 2528.394 kb on + strandat 2528.400 kb on + strandat 2528.400 kb on + strandat 2528.400 kb on + strandat 2528.401 kb on - strandat 2528.402 kb on + strandat 2528.402 kb on + strandat 2528.402 kb on + strandat 2528.402 kb on + strandat 2528.403 kb on - strandat 2528.408 kb on + strandat 2528.408 kb on + strandat 2528.408 kb on + strandat 2528.408 kb on + strandat 2528.408 kb on + strandat 2528.412 kb on + strandat 2528.424 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction K5
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2,525,552 - +0.2
2,525,687 + -1.2
2,525,688 - -0.3
2,525,688 - +0.4
2,525,688 - +0.4
2,525,712 - +0.4
2,525,712 - -1.4
2,525,807 + +0.4
2,525,825 + -0.1
2,525,826 - +0.4
2,525,826 - -0.6
2,526,025 + trmN NOLOHH_13040 0.29 +1.4
2,526,025 + trmN NOLOHH_13040 0.29 -0.8
2,526,026 - trmN NOLOHH_13040 0.29 +0.9
2,526,078 - trmN NOLOHH_13040 0.36 -0.6
2,526,107 + trmN NOLOHH_13040 0.40 +1.0
2,526,154 + trmN NOLOHH_13040 0.46 -0.9
2,526,154 + trmN NOLOHH_13040 0.46 -0.2
2,526,154 + trmN NOLOHH_13040 0.46 -0.8
2,526,186 + trmN NOLOHH_13040 0.50 +2.0
2,526,186 + trmN NOLOHH_13040 0.50 +0.9
2,526,186 + trmN NOLOHH_13040 0.50 -0.4
2,526,186 + trmN NOLOHH_13040 0.50 +0.4
2,526,186 + trmN NOLOHH_13040 0.50 +1.4
2,526,187 - trmN NOLOHH_13040 0.51 +0.4
2,526,187 - trmN NOLOHH_13040 0.51 +0.9
2,526,190 - trmN NOLOHH_13040 0.51 -0.9
2,526,202 + trmN NOLOHH_13040 0.53 +1.3
2,526,202 + trmN NOLOHH_13040 0.53 -0.0
2,526,202 + trmN NOLOHH_13040 0.53 -0.7
2,526,203 - trmN NOLOHH_13040 0.53 +0.8
2,526,239 + trmN NOLOHH_13040 0.58 +0.4
2,526,239 + trmN NOLOHH_13040 0.58 -0.6
2,526,239 + trmN NOLOHH_13040 0.58 +0.9
2,526,239 + trmN NOLOHH_13040 0.58 +0.4
2,526,240 - trmN NOLOHH_13040 0.58 +0.0
2,526,336 - trmN NOLOHH_13040 0.71 +0.4
2,526,376 + trmN NOLOHH_13040 0.76 +1.6
2,526,376 + trmN NOLOHH_13040 0.76 -0.9
2,526,464 + trmN NOLOHH_13040 0.88 +1.7
2,526,475 + trmN NOLOHH_13040 0.90 -0.2
2,526,501 + -0.6
2,526,514 - -0.5
2,526,514 - -1.2
2,526,514 - +0.8
2,526,514 - -0.1
2,526,537 + +1.4
2,526,537 + -1.6
2,526,537 + -1.8
2,526,545 + -1.2
2,526,545 + +0.8
2,526,545 + +1.4
2,526,549 + +0.3
2,526,550 - -0.0
2,526,550 - -0.4
2,526,726 + nadB NOLOHH_13045 0.12 -0.3
2,526,730 - nadB NOLOHH_13045 0.12 +0.4
2,526,810 + nadB NOLOHH_13045 0.17 +0.4
2,526,810 + nadB NOLOHH_13045 0.17 -1.2
2,526,810 + nadB NOLOHH_13045 0.17 -2.2
2,526,811 - nadB NOLOHH_13045 0.17 -0.9
2,526,811 - nadB NOLOHH_13045 0.17 +0.2
2,526,820 + nadB NOLOHH_13045 0.17 -0.2
2,526,821 - nadB NOLOHH_13045 0.18 -0.2
2,526,821 - nadB NOLOHH_13045 0.18 +0.1
2,526,821 - nadB NOLOHH_13045 0.18 +0.4
2,526,831 - nadB NOLOHH_13045 0.18 +0.6
2,526,844 + nadB NOLOHH_13045 0.19 -1.4
2,526,845 - nadB NOLOHH_13045 0.19 -0.9
2,526,845 - nadB NOLOHH_13045 0.19 -1.6
2,526,845 - nadB NOLOHH_13045 0.19 +0.1
2,526,854 + nadB NOLOHH_13045 0.20 +0.1
2,526,854 + nadB NOLOHH_13045 0.20 -0.5
2,526,855 - nadB NOLOHH_13045 0.20 +0.5
2,526,855 - nadB NOLOHH_13045 0.20 -0.9
2,526,855 - nadB NOLOHH_13045 0.20 +0.4
2,526,855 - nadB NOLOHH_13045 0.20 -0.8
2,526,907 + nadB NOLOHH_13045 0.23 -1.3
2,526,907 + nadB NOLOHH_13045 0.23 -0.9
2,526,908 - nadB NOLOHH_13045 0.23 +0.7
2,526,931 + nadB NOLOHH_13045 0.24 +1.0
2,526,931 + nadB NOLOHH_13045 0.24 -2.4
2,526,931 + nadB NOLOHH_13045 0.24 -0.9
2,526,931 + nadB NOLOHH_13045 0.24 +1.4
2,526,931 + nadB NOLOHH_13045 0.24 -1.6
2,526,932 - nadB NOLOHH_13045 0.24 -0.1
2,526,932 - nadB NOLOHH_13045 0.24 -1.4
2,526,932 - nadB NOLOHH_13045 0.24 +0.9
2,527,017 - nadB NOLOHH_13045 0.30 +0.1
2,527,026 + nadB NOLOHH_13045 0.30 -0.6
2,527,026 + nadB NOLOHH_13045 0.30 -0.8
2,527,027 - nadB NOLOHH_13045 0.30 +0.4
2,527,047 + nadB NOLOHH_13045 0.31 +0.9
2,527,047 + nadB NOLOHH_13045 0.31 +0.4
2,527,048 - nadB NOLOHH_13045 0.32 -1.0
2,527,088 + nadB NOLOHH_13045 0.34 +0.3
2,527,089 - nadB NOLOHH_13045 0.34 +0.6
2,527,102 + nadB NOLOHH_13045 0.35 +1.7
2,527,102 + nadB NOLOHH_13045 0.35 -0.5
2,527,103 - nadB NOLOHH_13045 0.35 -0.8
2,527,104 + nadB NOLOHH_13045 0.35 -0.8
2,527,104 + nadB NOLOHH_13045 0.35 +0.7
2,527,104 + nadB NOLOHH_13045 0.35 +0.1
2,527,104 + nadB NOLOHH_13045 0.35 -0.0
2,527,104 + nadB NOLOHH_13045 0.35 +0.4
2,527,104 + nadB NOLOHH_13045 0.35 -0.6
2,527,105 - nadB NOLOHH_13045 0.35 -0.6
2,527,213 + nadB NOLOHH_13045 0.42 -0.9
2,527,214 - nadB NOLOHH_13045 0.42 -2.8
2,527,214 - nadB NOLOHH_13045 0.42 +2.0
2,527,234 + nadB NOLOHH_13045 0.43 -0.3
2,527,234 + nadB NOLOHH_13045 0.43 -0.9
2,527,234 + nadB NOLOHH_13045 0.43 +0.4
2,527,235 - nadB NOLOHH_13045 0.43 +0.5
2,527,235 - nadB NOLOHH_13045 0.43 +1.2
2,527,235 - nadB NOLOHH_13045 0.43 +0.5
2,527,235 - nadB NOLOHH_13045 0.43 +1.0
2,527,235 - nadB NOLOHH_13045 0.43 +1.1
2,527,235 - nadB NOLOHH_13045 0.43 +0.6
2,527,235 - nadB NOLOHH_13045 0.43 -0.6
2,527,235 - nadB NOLOHH_13045 0.43 -1.1
2,527,235 - nadB NOLOHH_13045 0.43 -0.5
2,527,357 - nadB NOLOHH_13045 0.51 -2.4
2,527,357 - nadB NOLOHH_13045 0.51 +1.4
2,527,413 + nadB NOLOHH_13045 0.54 +1.4
2,527,413 + nadB NOLOHH_13045 0.54 +0.4
2,527,413 + nadB NOLOHH_13045 0.54 -0.6
2,527,414 - nadB NOLOHH_13045 0.54 +0.4
2,527,522 - nadB NOLOHH_13045 0.61 +2.0
2,527,527 + nadB NOLOHH_13045 0.61 -0.6
2,527,528 - nadB NOLOHH_13045 0.61 -1.2
2,527,595 - nadB NOLOHH_13045 0.65 +1.2
2,527,739 + nadB NOLOHH_13045 0.74 +0.1
2,527,740 - nadB NOLOHH_13045 0.74 -0.1
2,527,740 - nadB NOLOHH_13045 0.74 +0.6
2,527,740 - nadB NOLOHH_13045 0.74 +0.1
2,527,740 - nadB NOLOHH_13045 0.74 +0.7
2,527,786 + nadB NOLOHH_13045 0.77 +0.1
2,527,786 + nadB NOLOHH_13045 0.77 -1.6
2,527,786 + nadB NOLOHH_13045 0.77 -1.1
2,527,786 + nadB NOLOHH_13045 0.77 -0.7
2,527,786 + nadB NOLOHH_13045 0.77 +0.6
2,527,786 + nadB NOLOHH_13045 0.77 +2.4
2,527,787 - nadB NOLOHH_13045 0.77 +0.2
2,527,787 - nadB NOLOHH_13045 0.77 +0.8
2,527,787 - nadB NOLOHH_13045 0.77 -0.2
2,527,813 - nadB NOLOHH_13045 0.79 +0.0
2,527,813 - nadB NOLOHH_13045 0.79 +1.2
2,528,017 - +1.4
2,528,047 + +0.4
2,528,047 + +2.1
2,528,047 + -0.0
2,528,048 - -1.2
2,528,051 + +0.0
2,528,051 + +0.4
2,528,052 - +0.2
2,528,052 - -1.6
2,528,152 + -0.9
2,528,153 - +0.4
2,528,197 + -0.4
2,528,216 + +0.6
2,528,216 + -1.4
2,528,216 + +0.7
2,528,216 + +1.0
2,528,217 - -0.4
2,528,217 - +1.0
2,528,217 - +0.7
2,528,217 - -0.6
2,528,217 - -0.1
2,528,228 - +0.1
2,528,243 - -0.2
2,528,307 + +0.1
2,528,307 + -0.2
2,528,307 + +0.1
2,528,336 + +0.6
2,528,351 + -1.4
2,528,366 - +1.4
2,528,366 - -0.0
2,528,373 + -0.0
2,528,373 + -1.0
2,528,373 + -0.5
2,528,373 + +0.1
2,528,374 - -1.2
2,528,394 + +0.1
2,528,400 + -0.9
2,528,400 + +0.0
2,528,400 + -0.2
2,528,401 - -0.6
2,528,402 + -0.2
2,528,402 + -0.1
2,528,402 + -0.0
2,528,402 + +0.4
2,528,403 - +0.4
2,528,408 + +0.1
2,528,408 + -0.2
2,528,408 + +1.1
2,528,408 + +3.2
2,528,408 + -2.2
2,528,412 + -0.4
2,528,424 + +0.8

Or see this region's nucleotide sequence