Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rbbA and NOLOHH_08410 overlap by 1 nucleotides NOLOHH_08410 and hicB are separated by 330 nucleotides hicB and nikE are separated by 119 nucleotides
NOLOHH_08405: rbbA - ribosome-associated ATPase/putative transporter RbbA, at 1,623,578 to 1,626,313
rbbA
NOLOHH_08410: NOLOHH_08410 - ABC-2 family transporter protein, at 1,626,313 to 1,627,437
_08410
NOLOHH_08415: hicB - toxin-antitoxin system HicB family antitoxin, at 1,627,768 to 1,628,127
hicB
NOLOHH_08420: nikE - nickel import ATP-binding protein NikE, at 1,628,247 to 1,628,648
nikE
Position (kb)
1626
1627
1628 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1625.317 kb on + strand, within rbbA at 1625.317 kb on + strand, within rbbA at 1625.318 kb on - strand, within rbbA at 1625.438 kb on + strand, within rbbA at 1625.474 kb on - strand, within rbbA at 1625.475 kb on + strand, within rbbA at 1625.475 kb on + strand, within rbbA at 1625.475 kb on + strand, within rbbA at 1625.476 kb on - strand, within rbbA at 1625.476 kb on - strand, within rbbA at 1625.594 kb on + strand, within rbbA at 1625.595 kb on - strand, within rbbA at 1625.595 kb on - strand, within rbbA at 1625.595 kb on - strand, within rbbA at 1625.677 kb on + strand, within rbbA at 1625.677 kb on + strand, within rbbA at 1625.677 kb on + strand, within rbbA at 1625.696 kb on + strand, within rbbA at 1625.698 kb on + strand, within rbbA at 1625.699 kb on - strand, within rbbA at 1625.710 kb on - strand, within rbbA at 1625.710 kb on - strand, within rbbA at 1625.710 kb on - strand, within rbbA at 1625.775 kb on + strand, within rbbA at 1625.775 kb on + strand, within rbbA at 1625.776 kb on - strand, within rbbA at 1625.776 kb on - strand, within rbbA at 1625.818 kb on + strand, within rbbA at 1625.828 kb on + strand, within rbbA at 1625.828 kb on + strand, within rbbA at 1625.829 kb on - strand, within rbbA at 1625.867 kb on - strand, within rbbA at 1625.879 kb on + strand, within rbbA at 1625.879 kb on + strand, within rbbA at 1625.880 kb on - strand, within rbbA at 1625.880 kb on - strand, within rbbA at 1625.990 kb on + strand, within rbbA at 1625.991 kb on - strand, within rbbA at 1625.991 kb on - strand, within rbbA at 1625.991 kb on - strand, within rbbA at 1625.991 kb on - strand, within rbbA at 1625.991 kb on - strand, within rbbA at 1625.991 kb on - strand, within rbbA at 1625.991 kb on - strand, within rbbA at 1625.991 kb on - strand, within rbbA at 1625.991 kb on - strand, within rbbA at 1625.991 kb on - strand, within rbbA at 1625.991 kb on - strand, within rbbA at 1625.991 kb on - strand, within rbbA at 1625.991 kb on - strand, within rbbA at 1625.993 kb on - strand, within rbbA at 1625.993 kb on - strand, within rbbA at 1626.034 kb on + strand, within rbbA at 1626.279 kb on + strand at 1626.279 kb on + strand at 1626.279 kb on + strand at 1626.279 kb on + strand at 1626.279 kb on + strand at 1626.279 kb on + strand at 1626.279 kb on + strand at 1626.279 kb on + strand at 1626.279 kb on + strand at 1626.279 kb on + strand at 1626.279 kb on + strand at 1626.280 kb on - strand at 1626.280 kb on - strand at 1626.280 kb on - strand at 1626.280 kb on - strand at 1626.280 kb on - strand at 1626.283 kb on + strand at 1626.283 kb on + strand at 1626.284 kb on - strand at 1626.375 kb on + strand at 1626.523 kb on + strand, within NOLOHH_08410 at 1626.524 kb on - strand, within NOLOHH_08410 at 1626.612 kb on + strand, within NOLOHH_08410 at 1626.613 kb on - strand, within NOLOHH_08410 at 1626.715 kb on + strand, within NOLOHH_08410 at 1626.716 kb on - strand, within NOLOHH_08410 at 1626.717 kb on + strand, within NOLOHH_08410 at 1626.726 kb on + strand, within NOLOHH_08410 at 1626.726 kb on + strand, within NOLOHH_08410 at 1626.726 kb on + strand, within NOLOHH_08410 at 1626.726 kb on + strand, within NOLOHH_08410 at 1626.727 kb on - strand, within NOLOHH_08410 at 1626.729 kb on + strand, within NOLOHH_08410 at 1626.730 kb on - strand, within NOLOHH_08410 at 1626.870 kb on + strand, within NOLOHH_08410 at 1626.887 kb on + strand, within NOLOHH_08410 at 1626.887 kb on + strand, within NOLOHH_08410 at 1626.887 kb on + strand, within NOLOHH_08410 at 1626.887 kb on + strand, within NOLOHH_08410 at 1626.888 kb on - strand, within NOLOHH_08410 at 1626.888 kb on - strand, within NOLOHH_08410 at 1627.089 kb on + strand, within NOLOHH_08410 at 1627.090 kb on - strand, within NOLOHH_08410 at 1627.090 kb on - strand, within NOLOHH_08410 at 1627.141 kb on - strand, within NOLOHH_08410 at 1627.266 kb on + strand, within NOLOHH_08410 at 1627.266 kb on + strand, within NOLOHH_08410 at 1627.472 kb on - strand at 1627.484 kb on + strand at 1627.499 kb on + strand at 1627.499 kb on + strand at 1627.555 kb on + strand at 1627.566 kb on + strand at 1627.593 kb on + strand at 1627.594 kb on - strand at 1627.659 kb on + strand at 1627.662 kb on + strand at 1627.662 kb on + strand at 1627.662 kb on + strand at 1627.663 kb on - strand at 1627.666 kb on + strand at 1627.666 kb on + strand at 1627.666 kb on + strand at 1627.667 kb on - strand at 1627.667 kb on - strand at 1627.709 kb on - strand at 1627.749 kb on + strand at 1627.749 kb on + strand at 1627.749 kb on + strand at 1627.749 kb on + strand at 1627.749 kb on + strand at 1627.749 kb on + strand at 1627.749 kb on + strand at 1627.749 kb on + strand at 1627.749 kb on + strand at 1627.749 kb on + strand at 1627.749 kb on + strand at 1627.750 kb on - strand at 1627.750 kb on - strand at 1627.750 kb on - strand at 1627.750 kb on - strand at 1627.750 kb on - strand at 1627.750 kb on - strand at 1627.750 kb on - strand at 1627.750 kb on - strand at 1627.753 kb on + strand at 1627.753 kb on + strand at 1627.753 kb on + strand at 1627.753 kb on + strand at 1627.753 kb on + strand at 1627.753 kb on + strand at 1627.754 kb on - strand at 1627.754 kb on - strand at 1627.754 kb on - strand at 1627.754 kb on - strand at 1627.754 kb on - strand at 1627.754 kb on - strand at 1627.761 kb on + strand at 1627.762 kb on - strand at 1627.794 kb on + strand at 1627.794 kb on + strand at 1627.795 kb on - strand at 1627.795 kb on - strand at 1627.828 kb on + strand, within hicB at 1627.828 kb on + strand, within hicB at 1627.828 kb on + strand, within hicB at 1627.828 kb on + strand, within hicB at 1627.828 kb on + strand, within hicB at 1627.829 kb on - strand, within hicB at 1627.829 kb on - strand, within hicB at 1627.829 kb on - strand, within hicB at 1627.829 kb on - strand, within hicB at 1627.829 kb on - strand, within hicB at 1627.829 kb on - strand, within hicB at 1627.945 kb on + strand, within hicB at 1627.946 kb on - strand, within hicB at 1627.959 kb on + strand, within hicB at 1627.959 kb on + strand, within hicB at 1627.959 kb on + strand, within hicB at 1627.960 kb on - strand, within hicB at 1627.960 kb on - strand, within hicB at 1627.982 kb on - strand, within hicB at 1628.002 kb on - strand, within hicB at 1628.011 kb on - strand, within hicB at 1628.011 kb on - strand, within hicB at 1628.049 kb on + strand, within hicB at 1628.050 kb on - strand, within hicB at 1628.050 kb on - strand, within hicB at 1628.082 kb on + strand, within hicB at 1628.083 kb on - strand, within hicB at 1628.083 kb on - strand, within hicB at 1628.086 kb on + strand, within hicB at 1628.086 kb on + strand, within hicB at 1628.086 kb on + strand, within hicB at 1628.086 kb on + strand, within hicB at 1628.086 kb on + strand, within hicB at 1628.087 kb on - strand, within hicB at 1628.087 kb on - strand, within hicB at 1628.087 kb on - strand, within hicB at 1628.089 kb on - strand, within hicB at 1628.092 kb on - strand at 1628.124 kb on - strand at 1628.140 kb on + strand at 1628.140 kb on + strand at 1628.154 kb on + strand at 1628.154 kb on + strand at 1628.173 kb on + strand at 1628.173 kb on + strand at 1628.173 kb on + strand at 1628.173 kb on + strand at 1628.173 kb on + strand at 1628.173 kb on + strand at 1628.173 kb on + strand at 1628.173 kb on + strand at 1628.174 kb on - strand at 1628.174 kb on - strand at 1628.174 kb on - strand at 1628.174 kb on - strand at 1628.177 kb on + strand at 1628.177 kb on + strand at 1628.177 kb on + strand at 1628.178 kb on - strand at 1628.178 kb on - strand at 1628.178 kb on - strand at 1628.178 kb on - strand at 1628.199 kb on + strand at 1628.204 kb on + strand at 1628.204 kb on + strand at 1628.217 kb on + strand at 1628.244 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 1,625,317 + rbbA NOLOHH_08405 0.64 +0.3 1,625,317 + rbbA NOLOHH_08405 0.64 +0.1 1,625,318 - rbbA NOLOHH_08405 0.64 -0.5 1,625,438 + rbbA NOLOHH_08405 0.68 -0.9 1,625,474 - rbbA NOLOHH_08405 0.69 -0.4 1,625,475 + rbbA NOLOHH_08405 0.69 +0.3 1,625,475 + rbbA NOLOHH_08405 0.69 +0.4 1,625,475 + rbbA NOLOHH_08405 0.69 +2.6 1,625,476 - rbbA NOLOHH_08405 0.69 +0.9 1,625,476 - rbbA NOLOHH_08405 0.69 -0.4 1,625,594 + rbbA NOLOHH_08405 0.74 -0.5 1,625,595 - rbbA NOLOHH_08405 0.74 -1.3 1,625,595 - rbbA NOLOHH_08405 0.74 -0.6 1,625,595 - rbbA NOLOHH_08405 0.74 -0.0 1,625,677 + rbbA NOLOHH_08405 0.77 +0.3 1,625,677 + rbbA NOLOHH_08405 0.77 -0.3 1,625,677 + rbbA NOLOHH_08405 0.77 +0.2 1,625,696 + rbbA NOLOHH_08405 0.77 +0.5 1,625,698 + rbbA NOLOHH_08405 0.77 +0.4 1,625,699 - rbbA NOLOHH_08405 0.78 -1.3 1,625,710 - rbbA NOLOHH_08405 0.78 +0.1 1,625,710 - rbbA NOLOHH_08405 0.78 -0.3 1,625,710 - rbbA NOLOHH_08405 0.78 -0.0 1,625,775 + rbbA NOLOHH_08405 0.80 -0.3 1,625,775 + rbbA NOLOHH_08405 0.80 +0.5 1,625,776 - rbbA NOLOHH_08405 0.80 +0.6 1,625,776 - rbbA NOLOHH_08405 0.80 -0.2 1,625,818 + rbbA NOLOHH_08405 0.82 +1.1 1,625,828 + rbbA NOLOHH_08405 0.82 -1.8 1,625,828 + rbbA NOLOHH_08405 0.82 -0.7 1,625,829 - rbbA NOLOHH_08405 0.82 -0.2 1,625,867 - rbbA NOLOHH_08405 0.84 +1.1 1,625,879 + rbbA NOLOHH_08405 0.84 +0.6 1,625,879 + rbbA NOLOHH_08405 0.84 -1.2 1,625,880 - rbbA NOLOHH_08405 0.84 -0.1 1,625,880 - rbbA NOLOHH_08405 0.84 -1.3 1,625,990 + rbbA NOLOHH_08405 0.88 +0.3 1,625,991 - rbbA NOLOHH_08405 0.88 -0.5 1,625,991 - rbbA NOLOHH_08405 0.88 +1.0 1,625,991 - rbbA NOLOHH_08405 0.88 -0.7 1,625,991 - rbbA NOLOHH_08405 0.88 -0.4 1,625,991 - rbbA NOLOHH_08405 0.88 -1.3 1,625,991 - rbbA NOLOHH_08405 0.88 +0.3 1,625,991 - rbbA NOLOHH_08405 0.88 +0.3 1,625,991 - rbbA NOLOHH_08405 0.88 -0.3 1,625,991 - rbbA NOLOHH_08405 0.88 -0.3 1,625,991 - rbbA NOLOHH_08405 0.88 +0.0 1,625,991 - rbbA NOLOHH_08405 0.88 -1.1 1,625,991 - rbbA NOLOHH_08405 0.88 +1.0 1,625,991 - rbbA NOLOHH_08405 0.88 +0.3 1,625,993 - rbbA NOLOHH_08405 0.88 +0.6 1,625,993 - rbbA NOLOHH_08405 0.88 +0.1 1,626,034 + rbbA NOLOHH_08405 0.90 +0.9 1,626,279 + +1.9 1,626,279 + +0.1 1,626,279 + -0.6 1,626,279 + +0.9 1,626,279 + +0.3 1,626,279 + -0.8 1,626,279 + -0.1 1,626,279 + +1.0 1,626,279 + -0.2 1,626,279 + -1.0 1,626,279 + -0.6 1,626,280 - -0.7 1,626,280 - -0.7 1,626,280 - -0.5 1,626,280 - -0.2 1,626,280 - -0.2 1,626,283 + -1.0 1,626,283 + -0.1 1,626,284 - +0.7 1,626,375 + -0.5 1,626,523 + NOLOHH_08410 0.19 +0.1 1,626,524 - NOLOHH_08410 0.19 +0.9 1,626,612 + NOLOHH_08410 0.27 -0.3 1,626,613 - NOLOHH_08410 0.27 -1.3 1,626,715 + NOLOHH_08410 0.36 +0.9 1,626,716 - NOLOHH_08410 0.36 -1.1 1,626,717 + NOLOHH_08410 0.36 -0.2 1,626,726 + NOLOHH_08410 0.37 -0.4 1,626,726 + NOLOHH_08410 0.37 +0.1 1,626,726 + NOLOHH_08410 0.37 +0.2 1,626,726 + NOLOHH_08410 0.37 +0.5 1,626,727 - NOLOHH_08410 0.37 -0.1 1,626,729 + NOLOHH_08410 0.37 -0.7 1,626,730 - NOLOHH_08410 0.37 +0.9 1,626,870 + NOLOHH_08410 0.50 -0.3 1,626,887 + NOLOHH_08410 0.51 -1.1 1,626,887 + NOLOHH_08410 0.51 +0.1 1,626,887 + NOLOHH_08410 0.51 +0.2 1,626,887 + NOLOHH_08410 0.51 +0.7 1,626,888 - NOLOHH_08410 0.51 -1.3 1,626,888 - NOLOHH_08410 0.51 +0.3 1,627,089 + NOLOHH_08410 0.69 -0.2 1,627,090 - NOLOHH_08410 0.69 +0.3 1,627,090 - NOLOHH_08410 0.69 -0.5 1,627,141 - NOLOHH_08410 0.74 +0.3 1,627,266 + NOLOHH_08410 0.85 +0.0 1,627,266 + NOLOHH_08410 0.85 +1.4 1,627,472 - -1.5 1,627,484 + +0.5 1,627,499 + +2.2 1,627,499 + -0.3 1,627,555 + +1.1 1,627,566 + +1.1 1,627,593 + -2.0 1,627,594 - -0.1 1,627,659 + +0.3 1,627,662 + -1.3 1,627,662 + -0.0 1,627,662 + -0.1 1,627,663 - -0.0 1,627,666 + -0.3 1,627,666 + -0.9 1,627,666 + -1.3 1,627,667 - -1.3 1,627,667 - -0.1 1,627,709 - +0.3 1,627,749 + +1.9 1,627,749 + +0.3 1,627,749 + +0.5 1,627,749 + -0.5 1,627,749 + +0.9 1,627,749 + -0.3 1,627,749 + +0.6 1,627,749 + +1.3 1,627,749 + +1.1 1,627,749 + +0.1 1,627,749 + +0.1 1,627,750 - -0.6 1,627,750 - +0.7 1,627,750 - -0.2 1,627,750 - -2.2 1,627,750 - +1.0 1,627,750 - +1.3 1,627,750 - -1.0 1,627,750 - -1.0 1,627,753 + +0.9 1,627,753 + +0.6 1,627,753 + +0.3 1,627,753 + -0.6 1,627,753 + +0.3 1,627,753 + +1.5 1,627,754 - -0.5 1,627,754 - +0.2 1,627,754 - -1.0 1,627,754 - -0.7 1,627,754 - -1.3 1,627,754 - -0.3 1,627,761 + -0.1 1,627,762 - -0.1 1,627,794 + +0.6 1,627,794 + -0.2 1,627,795 - -0.2 1,627,795 - -0.8 1,627,828 + hicB NOLOHH_08415 0.17 -0.5 1,627,828 + hicB NOLOHH_08415 0.17 +0.1 1,627,828 + hicB NOLOHH_08415 0.17 -0.2 1,627,828 + hicB NOLOHH_08415 0.17 -0.8 1,627,828 + hicB NOLOHH_08415 0.17 +0.2 1,627,829 - hicB NOLOHH_08415 0.17 +0.6 1,627,829 - hicB NOLOHH_08415 0.17 +0.1 1,627,829 - hicB NOLOHH_08415 0.17 +0.3 1,627,829 - hicB NOLOHH_08415 0.17 +0.6 1,627,829 - hicB NOLOHH_08415 0.17 +1.2 1,627,829 - hicB NOLOHH_08415 0.17 -2.6 1,627,945 + hicB NOLOHH_08415 0.49 -0.3 1,627,946 - hicB NOLOHH_08415 0.49 +2.0 1,627,959 + hicB NOLOHH_08415 0.53 +0.5 1,627,959 + hicB NOLOHH_08415 0.53 -0.7 1,627,959 + hicB NOLOHH_08415 0.53 +0.9 1,627,960 - hicB NOLOHH_08415 0.53 +0.3 1,627,960 - hicB NOLOHH_08415 0.53 +0.3 1,627,982 - hicB NOLOHH_08415 0.59 +1.3 1,628,002 - hicB NOLOHH_08415 0.65 -0.2 1,628,011 - hicB NOLOHH_08415 0.68 -0.3 1,628,011 - hicB NOLOHH_08415 0.68 +1.0 1,628,049 + hicB NOLOHH_08415 0.78 -0.1 1,628,050 - hicB NOLOHH_08415 0.78 -0.3 1,628,050 - hicB NOLOHH_08415 0.78 +0.9 1,628,082 + hicB NOLOHH_08415 0.87 -0.3 1,628,083 - hicB NOLOHH_08415 0.88 -0.3 1,628,083 - hicB NOLOHH_08415 0.88 +0.1 1,628,086 + hicB NOLOHH_08415 0.88 -0.4 1,628,086 + hicB NOLOHH_08415 0.88 +0.1 1,628,086 + hicB NOLOHH_08415 0.88 +0.6 1,628,086 + hicB NOLOHH_08415 0.88 +0.4 1,628,086 + hicB NOLOHH_08415 0.88 +0.3 1,628,087 - hicB NOLOHH_08415 0.89 -0.0 1,628,087 - hicB NOLOHH_08415 0.89 -0.5 1,628,087 - hicB NOLOHH_08415 0.89 -1.3 1,628,089 - hicB NOLOHH_08415 0.89 -0.1 1,628,092 - -1.0 1,628,124 - -2.5 1,628,140 + -0.7 1,628,140 + +0.9 1,628,154 + -0.3 1,628,154 + +0.7 1,628,173 + +0.6 1,628,173 + -0.7 1,628,173 + +0.1 1,628,173 + +0.4 1,628,173 + +0.2 1,628,173 + -0.7 1,628,173 + -0.0 1,628,173 + -0.7 1,628,174 - +1.3 1,628,174 - +1.0 1,628,174 - -0.3 1,628,174 - -0.9 1,628,177 + -0.1 1,628,177 + +0.9 1,628,177 + -0.7 1,628,178 - +1.0 1,628,178 - +0.4 1,628,178 - +0.8 1,628,178 - -0.5 1,628,199 + -0.7 1,628,204 + +0.2 1,628,204 + -2.0 1,628,217 + +0.9 1,628,244 - -0.7
Or see this region's nucleotide sequence