Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt frdB and NOLOHH_04615 are separated by 10 nucleotides NOLOHH_04615 and frdD are separated by 10 nucleotides frdD and blaEC are separated by 62 nucleotides blaEC and blc are separated by 88 nucleotides blc and sugE overlap by 4 nucleotides
NOLOHH_04610: frdB - fumarate reductase iron-sulfur protein, at 837,824 to 838,558
frdB
NOLOHH_04615: NOLOHH_04615 - Fumarate reductase subunit C, at 838,569 to 838,964
_04615
NOLOHH_04620: frdD - fumarate reductase subunit FrdD, at 838,975 to 839,334
frdD
NOLOHH_04625: blaEC - BlaEC family class C beta-lactamase, at 839,397 to 840,530
blaEC
NOLOHH_04630: blc - lipocalin Blc, at 840,619 to 841,152
blc
NOLOHH_04635: sugE - quaternary ammonium compound efflux SMR transporter SugE, at 841,149 to 841,466
sugE
Position (kb) 839
840
841 Strain fitness (log2 ratio) -2
-1
0
1
2 at 838.400 kb on - strand, within frdB at 838.400 kb on - strand, within frdB at 838.439 kb on - strand, within frdB at 838.451 kb on + strand, within frdB at 838.584 kb on - strand at 838.590 kb on + strand at 838.590 kb on + strand at 838.590 kb on + strand at 838.590 kb on + strand at 838.590 kb on + strand at 838.591 kb on - strand at 838.594 kb on + strand at 838.594 kb on + strand at 838.595 kb on - strand at 838.595 kb on - strand at 838.595 kb on - strand at 838.645 kb on - strand, within NOLOHH_04615 at 838.645 kb on - strand, within NOLOHH_04615 at 838.856 kb on + strand, within NOLOHH_04615 at 838.856 kb on + strand, within NOLOHH_04615 at 838.864 kb on + strand, within NOLOHH_04615 at 838.864 kb on + strand, within NOLOHH_04615 at 838.957 kb on - strand at 839.040 kb on + strand, within frdD at 839.041 kb on - strand, within frdD at 839.056 kb on - strand, within frdD at 839.129 kb on - strand, within frdD at 839.129 kb on - strand, within frdD at 839.221 kb on - strand, within frdD at 839.326 kb on - strand at 839.332 kb on + strand at 839.332 kb on + strand at 839.332 kb on + strand at 839.332 kb on + strand at 839.333 kb on - strand at 839.333 kb on - strand at 839.333 kb on - strand at 839.396 kb on + strand at 839.396 kb on + strand at 839.396 kb on + strand at 839.396 kb on + strand at 839.396 kb on + strand at 839.396 kb on + strand at 839.397 kb on - strand at 839.397 kb on - strand at 839.397 kb on - strand at 839.397 kb on - strand at 839.397 kb on - strand at 839.397 kb on - strand at 839.425 kb on + strand at 839.425 kb on + strand at 839.426 kb on - strand at 839.429 kb on + strand at 839.429 kb on + strand at 839.502 kb on - strand at 839.504 kb on - strand at 839.552 kb on + strand, within blaEC at 839.552 kb on + strand, within blaEC at 839.559 kb on + strand, within blaEC at 839.559 kb on + strand, within blaEC at 839.560 kb on - strand, within blaEC at 839.562 kb on + strand, within blaEC at 839.562 kb on + strand, within blaEC at 839.562 kb on + strand, within blaEC at 839.562 kb on + strand, within blaEC at 839.563 kb on - strand, within blaEC at 839.563 kb on - strand, within blaEC at 839.563 kb on - strand, within blaEC at 839.629 kb on + strand, within blaEC at 839.629 kb on + strand, within blaEC at 839.630 kb on - strand, within blaEC at 839.630 kb on - strand, within blaEC at 839.698 kb on + strand, within blaEC at 839.732 kb on + strand, within blaEC at 839.761 kb on + strand, within blaEC at 839.761 kb on + strand, within blaEC at 839.761 kb on + strand, within blaEC at 839.761 kb on + strand, within blaEC at 839.762 kb on - strand, within blaEC at 839.764 kb on + strand, within blaEC at 839.764 kb on + strand, within blaEC at 839.764 kb on + strand, within blaEC at 839.764 kb on + strand, within blaEC at 839.764 kb on + strand, within blaEC at 839.764 kb on + strand, within blaEC at 839.764 kb on + strand, within blaEC at 839.764 kb on + strand, within blaEC at 839.764 kb on + strand, within blaEC at 839.765 kb on - strand, within blaEC at 839.765 kb on - strand, within blaEC at 839.765 kb on - strand, within blaEC at 839.765 kb on - strand, within blaEC at 839.765 kb on - strand, within blaEC at 839.765 kb on - strand, within blaEC at 839.778 kb on + strand, within blaEC at 839.778 kb on + strand, within blaEC at 839.778 kb on + strand, within blaEC at 839.779 kb on - strand, within blaEC at 839.865 kb on - strand, within blaEC at 839.865 kb on - strand, within blaEC at 839.892 kb on + strand, within blaEC at 839.893 kb on - strand, within blaEC at 840.002 kb on + strand, within blaEC at 840.002 kb on + strand, within blaEC at 840.002 kb on + strand, within blaEC at 840.002 kb on + strand, within blaEC at 840.002 kb on + strand, within blaEC at 840.002 kb on + strand, within blaEC at 840.002 kb on + strand, within blaEC at 840.003 kb on - strand, within blaEC at 840.003 kb on - strand, within blaEC at 840.003 kb on - strand, within blaEC at 840.012 kb on - strand, within blaEC at 840.012 kb on - strand, within blaEC at 840.017 kb on - strand, within blaEC at 840.039 kb on + strand, within blaEC at 840.039 kb on + strand, within blaEC at 840.092 kb on - strand, within blaEC at 840.105 kb on + strand, within blaEC at 840.155 kb on + strand, within blaEC at 840.240 kb on + strand, within blaEC at 840.337 kb on + strand, within blaEC at 840.368 kb on - strand, within blaEC at 840.386 kb on + strand, within blaEC at 840.386 kb on + strand, within blaEC at 840.386 kb on + strand, within blaEC at 840.386 kb on + strand, within blaEC at 840.386 kb on + strand, within blaEC at 840.387 kb on - strand, within blaEC at 840.387 kb on - strand, within blaEC at 840.387 kb on - strand, within blaEC at 840.417 kb on + strand at 840.417 kb on + strand at 840.417 kb on + strand at 840.417 kb on + strand at 840.417 kb on + strand at 840.417 kb on + strand at 840.417 kb on + strand at 840.417 kb on + strand at 840.417 kb on + strand at 840.418 kb on - strand at 840.418 kb on - strand at 840.418 kb on - strand at 840.418 kb on - strand at 840.418 kb on - strand at 840.418 kb on - strand at 840.418 kb on - strand at 840.418 kb on - strand at 840.418 kb on - strand at 840.428 kb on + strand at 840.449 kb on + strand at 840.451 kb on + strand at 840.451 kb on + strand at 840.451 kb on + strand at 840.452 kb on - strand at 840.528 kb on + strand at 840.587 kb on - strand at 840.587 kb on - strand at 840.618 kb on + strand at 840.707 kb on + strand, within blc at 840.748 kb on + strand, within blc at 840.748 kb on + strand, within blc at 840.808 kb on + strand, within blc at 840.808 kb on + strand, within blc at 840.808 kb on + strand, within blc at 840.808 kb on + strand, within blc at 840.809 kb on - strand, within blc at 840.809 kb on - strand, within blc at 840.843 kb on + strand, within blc at 840.853 kb on + strand, within blc at 840.853 kb on + strand, within blc at 840.853 kb on + strand, within blc at 840.854 kb on - strand, within blc at 840.854 kb on - strand, within blc at 840.855 kb on + strand, within blc at 840.966 kb on + strand, within blc at 841.027 kb on + strand, within blc at 841.027 kb on + strand, within blc at 841.120 kb on - strand at 841.125 kb on + strand at 841.125 kb on + strand at 841.150 kb on + strand at 841.150 kb on + strand at 841.275 kb on - strand, within sugE at 841.291 kb on + strand, within sugE at 841.333 kb on - strand, within sugE at 841.333 kb on - strand, within sugE at 841.333 kb on - strand, within sugE at 841.367 kb on + strand, within sugE at 841.400 kb on + strand, within sugE at 841.401 kb on - strand, within sugE at 841.402 kb on + strand, within sugE at 841.402 kb on + strand, within sugE at 841.403 kb on - strand, within sugE at 841.403 kb on - strand, within sugE at 841.403 kb on - strand, within sugE at 841.403 kb on - strand, within sugE at 841.403 kb on - strand, within sugE at 841.403 kb on - strand, within sugE at 841.403 kb on - strand, within sugE at 841.403 kb on - strand, within sugE at 841.423 kb on - strand, within sugE at 841.445 kb on + strand at 841.446 kb on - strand at 841.449 kb on + strand at 841.449 kb on + strand at 841.449 kb on + strand at 841.449 kb on + strand at 841.449 kb on + strand at 841.450 kb on - strand at 841.450 kb on - strand at 841.450 kb on - strand at 841.450 kb on - strand at 841.450 kb on - strand at 841.450 kb on - strand at 841.455 kb on - strand at 841.466 kb on + strand at 841.466 kb on + strand at 841.467 kb on - strand at 841.467 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 838,400 - frdB NOLOHH_04610 0.78 +0.8 838,400 - frdB NOLOHH_04610 0.78 -0.4 838,439 - frdB NOLOHH_04610 0.84 +0.7 838,451 + frdB NOLOHH_04610 0.85 +0.2 838,584 - +0.1 838,590 + -0.2 838,590 + +1.0 838,590 + +0.7 838,590 + +0.1 838,590 + +0.1 838,591 - +0.9 838,594 + -0.2 838,594 + -1.0 838,595 - -0.7 838,595 - -1.3 838,595 - +1.3 838,645 - NOLOHH_04615 0.19 +0.6 838,645 - NOLOHH_04615 0.19 -0.5 838,856 + NOLOHH_04615 0.72 -1.9 838,856 + NOLOHH_04615 0.72 -1.3 838,864 + NOLOHH_04615 0.74 +0.6 838,864 + NOLOHH_04615 0.74 -1.6 838,957 - +0.9 839,040 + frdD NOLOHH_04620 0.18 -0.8 839,041 - frdD NOLOHH_04620 0.18 +0.0 839,056 - frdD NOLOHH_04620 0.23 +0.5 839,129 - frdD NOLOHH_04620 0.43 -0.0 839,129 - frdD NOLOHH_04620 0.43 -0.5 839,221 - frdD NOLOHH_04620 0.68 +0.3 839,326 - +1.3 839,332 + -2.0 839,332 + -0.9 839,332 + +1.3 839,332 + -1.6 839,333 - -0.2 839,333 - +1.2 839,333 - +2.1 839,396 + +0.3 839,396 + +0.3 839,396 + -0.5 839,396 + -0.3 839,396 + +0.2 839,396 + +1.9 839,397 - -1.0 839,397 - +0.1 839,397 - -0.1 839,397 - -2.3 839,397 - +0.1 839,397 - -0.1 839,425 + -1.0 839,425 + +0.3 839,426 - +0.3 839,429 + -1.7 839,429 + +0.2 839,502 - +0.4 839,504 - -0.8 839,552 + blaEC NOLOHH_04625 0.14 -0.3 839,552 + blaEC NOLOHH_04625 0.14 -0.2 839,559 + blaEC NOLOHH_04625 0.14 -1.2 839,559 + blaEC NOLOHH_04625 0.14 +1.1 839,560 - blaEC NOLOHH_04625 0.14 +0.3 839,562 + blaEC NOLOHH_04625 0.15 -0.5 839,562 + blaEC NOLOHH_04625 0.15 +0.3 839,562 + blaEC NOLOHH_04625 0.15 -0.1 839,562 + blaEC NOLOHH_04625 0.15 -1.1 839,563 - blaEC NOLOHH_04625 0.15 -0.8 839,563 - blaEC NOLOHH_04625 0.15 -1.1 839,563 - blaEC NOLOHH_04625 0.15 -0.7 839,629 + blaEC NOLOHH_04625 0.20 -0.5 839,629 + blaEC NOLOHH_04625 0.20 +0.6 839,630 - blaEC NOLOHH_04625 0.21 +0.3 839,630 - blaEC NOLOHH_04625 0.21 -1.3 839,698 + blaEC NOLOHH_04625 0.27 -0.5 839,732 + blaEC NOLOHH_04625 0.30 +1.1 839,761 + blaEC NOLOHH_04625 0.32 -2.4 839,761 + blaEC NOLOHH_04625 0.32 -0.1 839,761 + blaEC NOLOHH_04625 0.32 -0.0 839,761 + blaEC NOLOHH_04625 0.32 -0.3 839,762 - blaEC NOLOHH_04625 0.32 +0.1 839,764 + blaEC NOLOHH_04625 0.32 +0.3 839,764 + blaEC NOLOHH_04625 0.32 +0.3 839,764 + blaEC NOLOHH_04625 0.32 -0.1 839,764 + blaEC NOLOHH_04625 0.32 -0.3 839,764 + blaEC NOLOHH_04625 0.32 -1.0 839,764 + blaEC NOLOHH_04625 0.32 +0.3 839,764 + blaEC NOLOHH_04625 0.32 -0.7 839,764 + blaEC NOLOHH_04625 0.32 +1.0 839,764 + blaEC NOLOHH_04625 0.32 -0.2 839,765 - blaEC NOLOHH_04625 0.32 +0.6 839,765 - blaEC NOLOHH_04625 0.32 +0.0 839,765 - blaEC NOLOHH_04625 0.32 +0.3 839,765 - blaEC NOLOHH_04625 0.32 +0.0 839,765 - blaEC NOLOHH_04625 0.32 -0.7 839,765 - blaEC NOLOHH_04625 0.32 +0.3 839,778 + blaEC NOLOHH_04625 0.34 -0.4 839,778 + blaEC NOLOHH_04625 0.34 +1.3 839,778 + blaEC NOLOHH_04625 0.34 -0.4 839,779 - blaEC NOLOHH_04625 0.34 +0.0 839,865 - blaEC NOLOHH_04625 0.41 +0.1 839,865 - blaEC NOLOHH_04625 0.41 -0.8 839,892 + blaEC NOLOHH_04625 0.44 -1.3 839,893 - blaEC NOLOHH_04625 0.44 -0.7 840,002 + blaEC NOLOHH_04625 0.53 -1.2 840,002 + blaEC NOLOHH_04625 0.53 +0.8 840,002 + blaEC NOLOHH_04625 0.53 -1.3 840,002 + blaEC NOLOHH_04625 0.53 -0.7 840,002 + blaEC NOLOHH_04625 0.53 -0.8 840,002 + blaEC NOLOHH_04625 0.53 -1.9 840,002 + blaEC NOLOHH_04625 0.53 +1.1 840,003 - blaEC NOLOHH_04625 0.53 +0.0 840,003 - blaEC NOLOHH_04625 0.53 +0.1 840,003 - blaEC NOLOHH_04625 0.53 -0.1 840,012 - blaEC NOLOHH_04625 0.54 +0.3 840,012 - blaEC NOLOHH_04625 0.54 +0.9 840,017 - blaEC NOLOHH_04625 0.55 -0.4 840,039 + blaEC NOLOHH_04625 0.57 -0.7 840,039 + blaEC NOLOHH_04625 0.57 -1.3 840,092 - blaEC NOLOHH_04625 0.61 -0.7 840,105 + blaEC NOLOHH_04625 0.62 +0.1 840,155 + blaEC NOLOHH_04625 0.67 +0.1 840,240 + blaEC NOLOHH_04625 0.74 +0.3 840,337 + blaEC NOLOHH_04625 0.83 -0.5 840,368 - blaEC NOLOHH_04625 0.86 -0.3 840,386 + blaEC NOLOHH_04625 0.87 +1.2 840,386 + blaEC NOLOHH_04625 0.87 -1.1 840,386 + blaEC NOLOHH_04625 0.87 +0.5 840,386 + blaEC NOLOHH_04625 0.87 -1.0 840,386 + blaEC NOLOHH_04625 0.87 -0.4 840,387 - blaEC NOLOHH_04625 0.87 -0.7 840,387 - blaEC NOLOHH_04625 0.87 -0.1 840,387 - blaEC NOLOHH_04625 0.87 -0.6 840,417 + +1.1 840,417 + +0.0 840,417 + +0.3 840,417 + +1.2 840,417 + -1.7 840,417 + +0.8 840,417 + -0.4 840,417 + -2.0 840,417 + +0.3 840,418 - +0.2 840,418 - +0.9 840,418 - +0.6 840,418 - -0.8 840,418 - +0.3 840,418 - +0.5 840,418 - -0.4 840,418 - -0.4 840,418 - +0.3 840,428 + +1.1 840,449 + -1.1 840,451 + -0.9 840,451 + -0.0 840,451 + -0.9 840,452 - -0.1 840,528 + +1.0 840,587 - -0.8 840,587 - +0.3 840,618 + -0.6 840,707 + blc NOLOHH_04630 0.16 +0.5 840,748 + blc NOLOHH_04630 0.24 -0.2 840,748 + blc NOLOHH_04630 0.24 -1.4 840,808 + blc NOLOHH_04630 0.35 -0.1 840,808 + blc NOLOHH_04630 0.35 -0.1 840,808 + blc NOLOHH_04630 0.35 -1.7 840,808 + blc NOLOHH_04630 0.35 +1.1 840,809 - blc NOLOHH_04630 0.36 -0.4 840,809 - blc NOLOHH_04630 0.36 +0.3 840,843 + blc NOLOHH_04630 0.42 -0.7 840,853 + blc NOLOHH_04630 0.44 -0.5 840,853 + blc NOLOHH_04630 0.44 -0.2 840,853 + blc NOLOHH_04630 0.44 +0.0 840,854 - blc NOLOHH_04630 0.44 +1.8 840,854 - blc NOLOHH_04630 0.44 -0.0 840,855 + blc NOLOHH_04630 0.44 +0.4 840,966 + blc NOLOHH_04630 0.65 -1.3 841,027 + blc NOLOHH_04630 0.76 +0.3 841,027 + blc NOLOHH_04630 0.76 -0.1 841,120 - +0.7 841,125 + -0.3 841,125 + -1.2 841,150 + +0.1 841,150 + +0.5 841,275 - sugE NOLOHH_04635 0.40 +0.3 841,291 + sugE NOLOHH_04635 0.45 +0.3 841,333 - sugE NOLOHH_04635 0.58 -0.3 841,333 - sugE NOLOHH_04635 0.58 -1.7 841,333 - sugE NOLOHH_04635 0.58 +0.3 841,367 + sugE NOLOHH_04635 0.69 +0.5 841,400 + sugE NOLOHH_04635 0.79 -1.5 841,401 - sugE NOLOHH_04635 0.79 +1.1 841,402 + sugE NOLOHH_04635 0.80 +0.3 841,402 + sugE NOLOHH_04635 0.80 -0.6 841,403 - sugE NOLOHH_04635 0.80 -0.4 841,403 - sugE NOLOHH_04635 0.80 -0.8 841,403 - sugE NOLOHH_04635 0.80 +0.2 841,403 - sugE NOLOHH_04635 0.80 +0.3 841,403 - sugE NOLOHH_04635 0.80 +1.6 841,403 - sugE NOLOHH_04635 0.80 +0.0 841,403 - sugE NOLOHH_04635 0.80 +1.3 841,403 - sugE NOLOHH_04635 0.80 -0.0 841,423 - sugE NOLOHH_04635 0.86 +0.0 841,445 + +0.5 841,446 - +0.7 841,449 + -0.4 841,449 + +1.3 841,449 + -0.7 841,449 + -0.1 841,449 + -1.3 841,450 - -0.4 841,450 - +1.0 841,450 - +0.6 841,450 - -0.1 841,450 - -0.3 841,450 - +0.6 841,455 - +0.7 841,466 + -0.4 841,466 + +0.3 841,467 - -0.5 841,467 - -0.1
Or see this region's nucleotide sequence