Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt serB and lplA are separated by 105 nucleotides lplA and lplA are separated by 27 nucleotides lplA and NOLOHH_03540 are separated by 31 nucleotides NOLOHH_03540 and deoD are separated by 274 nucleotides
NOLOHH_03525: serB - phosphoserine phosphatase, at 625,318 to 626,286
serB
NOLOHH_03530: lplA - YtjB family periplasmic protein, at 626,392 to 627,036
lplA
NOLOHH_03535: lplA - lipoate--protein ligase LplA, at 627,064 to 628,080
lplA
NOLOHH_03540: NOLOHH_03540 - Lipoate-protein ligase A, at 628,112 to 628,261
_03540
NOLOHH_03545: deoD - purine-nucleoside phosphorylase, at 628,536 to 629,255
deoD
Position (kb) 627
628
629 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 626.066 kb on + strand, within serB at 626.067 kb on - strand, within serB at 626.124 kb on - strand, within serB at 626.143 kb on - strand, within serB at 626.159 kb on + strand, within serB at 626.159 kb on + strand, within serB at 626.159 kb on + strand, within serB at 626.159 kb on + strand, within serB at 626.160 kb on - strand, within serB at 626.160 kb on - strand, within serB at 626.160 kb on - strand, within serB at 626.189 kb on + strand, within serB at 626.218 kb on + strand at 626.218 kb on + strand at 626.219 kb on - strand at 626.275 kb on - strand at 626.275 kb on - strand at 626.287 kb on + strand at 626.299 kb on - strand at 626.322 kb on + strand at 626.342 kb on + strand at 626.364 kb on + strand at 626.364 kb on + strand at 626.364 kb on + strand at 626.364 kb on + strand at 626.365 kb on - strand at 626.365 kb on - strand at 626.365 kb on - strand at 626.365 kb on - strand at 626.365 kb on - strand at 626.365 kb on - strand at 626.491 kb on - strand, within lplA at 626.514 kb on + strand, within lplA at 626.514 kb on + strand, within lplA at 626.514 kb on + strand, within lplA at 626.514 kb on + strand, within lplA at 626.515 kb on - strand, within lplA at 626.558 kb on + strand, within lplA at 626.559 kb on - strand, within lplA at 626.668 kb on + strand, within lplA at 626.669 kb on - strand, within lplA at 626.669 kb on - strand, within lplA at 626.669 kb on - strand, within lplA at 626.669 kb on - strand, within lplA at 626.669 kb on - strand, within lplA at 626.669 kb on - strand, within lplA at 626.763 kb on + strand, within lplA at 626.763 kb on + strand, within lplA at 626.763 kb on + strand, within lplA at 626.838 kb on + strand, within lplA at 626.838 kb on + strand, within lplA at 626.838 kb on + strand, within lplA at 626.839 kb on - strand, within lplA at 626.839 kb on - strand, within lplA at 626.886 kb on - strand, within lplA at 626.943 kb on - strand, within lplA at 627.042 kb on + strand at 627.043 kb on - strand at 627.045 kb on + strand at 627.045 kb on + strand at 627.046 kb on - strand at 627.063 kb on + strand at 627.063 kb on + strand at 627.063 kb on + strand at 627.064 kb on - strand at 627.074 kb on + strand at 627.097 kb on + strand at 627.098 kb on - strand at 627.132 kb on + strand at 627.194 kb on + strand, within lplA at 627.231 kb on + strand, within lplA at 627.231 kb on + strand, within lplA at 627.232 kb on - strand, within lplA at 627.232 kb on - strand, within lplA at 627.255 kb on + strand, within lplA at 627.255 kb on + strand, within lplA at 627.256 kb on - strand, within lplA at 627.256 kb on - strand, within lplA at 627.279 kb on + strand, within lplA at 627.316 kb on - strand, within lplA at 627.325 kb on - strand, within lplA at 627.349 kb on + strand, within lplA at 627.556 kb on + strand, within lplA at 627.556 kb on + strand, within lplA at 627.557 kb on - strand, within lplA at 627.597 kb on + strand, within lplA at 627.597 kb on + strand, within lplA at 627.597 kb on + strand, within lplA at 627.597 kb on + strand, within lplA at 627.598 kb on - strand, within lplA at 627.598 kb on - strand, within lplA at 627.598 kb on - strand, within lplA at 627.598 kb on - strand, within lplA at 627.711 kb on - strand, within lplA at 627.784 kb on - strand, within lplA at 627.843 kb on + strand, within lplA at 627.844 kb on - strand, within lplA at 628.144 kb on + strand, within NOLOHH_03540 at 628.150 kb on + strand, within NOLOHH_03540 at 628.150 kb on + strand, within NOLOHH_03540 at 628.150 kb on + strand, within NOLOHH_03540 at 628.150 kb on + strand, within NOLOHH_03540 at 628.150 kb on + strand, within NOLOHH_03540 at 628.151 kb on - strand, within NOLOHH_03540 at 628.151 kb on - strand, within NOLOHH_03540 at 628.151 kb on - strand, within NOLOHH_03540 at 628.152 kb on + strand, within NOLOHH_03540 at 628.152 kb on + strand, within NOLOHH_03540 at 628.152 kb on + strand, within NOLOHH_03540 at 628.153 kb on - strand, within NOLOHH_03540 at 628.158 kb on + strand, within NOLOHH_03540 at 628.201 kb on + strand, within NOLOHH_03540 at 628.206 kb on + strand, within NOLOHH_03540 at 628.207 kb on - strand, within NOLOHH_03540 at 628.221 kb on + strand, within NOLOHH_03540 at 628.225 kb on + strand, within NOLOHH_03540 at 628.260 kb on - strand at 628.369 kb on + strand at 628.369 kb on + strand at 628.369 kb on + strand at 628.370 kb on - strand at 628.389 kb on + strand at 628.390 kb on - strand at 628.471 kb on - strand at 628.538 kb on - strand at 628.696 kb on + strand, within deoD at 628.696 kb on + strand, within deoD at 628.697 kb on - strand, within deoD at 628.700 kb on + strand, within deoD at 628.701 kb on - strand, within deoD at 628.892 kb on + strand, within deoD at 628.959 kb on + strand, within deoD at 629.038 kb on + strand, within deoD at 629.038 kb on + strand, within deoD at 629.039 kb on - strand, within deoD at 629.039 kb on - strand, within deoD
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 626,066 + serB NOLOHH_03525 0.77 -0.3 626,067 - serB NOLOHH_03525 0.77 +1.5 626,124 - serB NOLOHH_03525 0.83 +1.4 626,143 - serB NOLOHH_03525 0.85 +0.8 626,159 + serB NOLOHH_03525 0.87 -0.4 626,159 + serB NOLOHH_03525 0.87 -0.2 626,159 + serB NOLOHH_03525 0.87 +0.2 626,159 + serB NOLOHH_03525 0.87 -0.4 626,160 - serB NOLOHH_03525 0.87 +0.1 626,160 - serB NOLOHH_03525 0.87 +2.2 626,160 - serB NOLOHH_03525 0.87 +0.4 626,189 + serB NOLOHH_03525 0.90 +1.5 626,218 + -0.2 626,218 + +0.6 626,219 - +1.4 626,275 - -0.4 626,275 - -0.6 626,287 + -0.2 626,299 - -0.8 626,322 + +0.1 626,342 + +1.9 626,364 + +0.6 626,364 + -0.2 626,364 + +0.6 626,364 + -0.1 626,365 - +0.6 626,365 - +1.0 626,365 - -0.0 626,365 - -0.5 626,365 - -0.1 626,365 - +2.2 626,491 - lplA NOLOHH_03530 0.15 +0.4 626,514 + lplA NOLOHH_03530 0.19 -1.2 626,514 + lplA NOLOHH_03530 0.19 +0.0 626,514 + lplA NOLOHH_03530 0.19 -1.4 626,514 + lplA NOLOHH_03530 0.19 -0.5 626,515 - lplA NOLOHH_03530 0.19 +0.0 626,558 + lplA NOLOHH_03530 0.26 +0.5 626,559 - lplA NOLOHH_03530 0.26 -0.6 626,668 + lplA NOLOHH_03530 0.43 +1.0 626,669 - lplA NOLOHH_03530 0.43 +0.4 626,669 - lplA NOLOHH_03530 0.43 -0.8 626,669 - lplA NOLOHH_03530 0.43 -0.4 626,669 - lplA NOLOHH_03530 0.43 -0.5 626,669 - lplA NOLOHH_03530 0.43 -0.1 626,669 - lplA NOLOHH_03530 0.43 -0.4 626,763 + lplA NOLOHH_03530 0.58 -0.8 626,763 + lplA NOLOHH_03530 0.58 -0.9 626,763 + lplA NOLOHH_03530 0.58 -1.4 626,838 + lplA NOLOHH_03530 0.69 -2.8 626,838 + lplA NOLOHH_03530 0.69 +0.3 626,838 + lplA NOLOHH_03530 0.69 -0.6 626,839 - lplA NOLOHH_03530 0.69 -0.6 626,839 - lplA NOLOHH_03530 0.69 -1.4 626,886 - lplA NOLOHH_03530 0.77 -0.2 626,943 - lplA NOLOHH_03530 0.85 -1.6 627,042 + +0.6 627,043 - -0.0 627,045 + -0.6 627,045 + +0.3 627,046 - +2.0 627,063 + +0.4 627,063 + +0.2 627,063 + +0.2 627,064 - +1.1 627,074 + -0.0 627,097 + -0.7 627,098 - -0.2 627,132 + +0.1 627,194 + lplA NOLOHH_03535 0.13 +0.1 627,231 + lplA NOLOHH_03535 0.16 -0.7 627,231 + lplA NOLOHH_03535 0.16 -0.3 627,232 - lplA NOLOHH_03535 0.17 -0.0 627,232 - lplA NOLOHH_03535 0.17 +1.1 627,255 + lplA NOLOHH_03535 0.19 -0.4 627,255 + lplA NOLOHH_03535 0.19 +2.0 627,256 - lplA NOLOHH_03535 0.19 -0.0 627,256 - lplA NOLOHH_03535 0.19 -0.1 627,279 + lplA NOLOHH_03535 0.21 +0.0 627,316 - lplA NOLOHH_03535 0.25 +2.0 627,325 - lplA NOLOHH_03535 0.26 +2.4 627,349 + lplA NOLOHH_03535 0.28 -0.6 627,556 + lplA NOLOHH_03535 0.48 -0.3 627,556 + lplA NOLOHH_03535 0.48 -0.6 627,557 - lplA NOLOHH_03535 0.48 +0.2 627,597 + lplA NOLOHH_03535 0.52 +0.0 627,597 + lplA NOLOHH_03535 0.52 -0.9 627,597 + lplA NOLOHH_03535 0.52 -0.8 627,597 + lplA NOLOHH_03535 0.52 +0.1 627,598 - lplA NOLOHH_03535 0.53 -0.0 627,598 - lplA NOLOHH_03535 0.53 -1.7 627,598 - lplA NOLOHH_03535 0.53 -0.8 627,598 - lplA NOLOHH_03535 0.53 +0.5 627,711 - lplA NOLOHH_03535 0.64 +0.2 627,784 - lplA NOLOHH_03535 0.71 +1.0 627,843 + lplA NOLOHH_03535 0.77 +0.5 627,844 - lplA NOLOHH_03535 0.77 +0.6 628,144 + NOLOHH_03540 0.21 -0.3 628,150 + NOLOHH_03540 0.25 +0.9 628,150 + NOLOHH_03540 0.25 +0.5 628,150 + NOLOHH_03540 0.25 +0.5 628,150 + NOLOHH_03540 0.25 +0.1 628,150 + NOLOHH_03540 0.25 +0.1 628,151 - NOLOHH_03540 0.26 +0.4 628,151 - NOLOHH_03540 0.26 +0.8 628,151 - NOLOHH_03540 0.26 -0.8 628,152 + NOLOHH_03540 0.27 +2.0 628,152 + NOLOHH_03540 0.27 -0.5 628,152 + NOLOHH_03540 0.27 +0.8 628,153 - NOLOHH_03540 0.27 +1.0 628,158 + NOLOHH_03540 0.31 -1.6 628,201 + NOLOHH_03540 0.59 -1.2 628,206 + NOLOHH_03540 0.63 -0.1 628,207 - NOLOHH_03540 0.63 +0.1 628,221 + NOLOHH_03540 0.73 +0.4 628,225 + NOLOHH_03540 0.75 -0.2 628,260 - +0.4 628,369 + -1.5 628,369 + -1.0 628,369 + -0.1 628,370 - -0.6 628,389 + -0.6 628,390 - +0.4 628,471 - -0.8 628,538 - +1.4 628,696 + deoD NOLOHH_03545 0.22 +0.4 628,696 + deoD NOLOHH_03545 0.22 -1.0 628,697 - deoD NOLOHH_03545 0.22 +1.1 628,700 + deoD NOLOHH_03545 0.23 +2.4 628,701 - deoD NOLOHH_03545 0.23 -0.1 628,892 + deoD NOLOHH_03545 0.49 +0.4 628,959 + deoD NOLOHH_03545 0.59 +1.2 629,038 + deoD NOLOHH_03545 0.70 +0.4 629,038 + deoD NOLOHH_03545 0.70 -0.2 629,039 - deoD NOLOHH_03545 0.70 +0.7 629,039 - deoD NOLOHH_03545 0.70 -0.1
Or see this region's nucleotide sequence