Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt allS and mnmH are separated by 68 nucleotides mnmH and NOLOHH_00930 are separated by 115 nucleotides
NOLOHH_00920: allS - HTH-type transcriptional activator AllS, at 70,733 to 71,659
allS
NOLOHH_00925: mnmH - tRNA 2-selenouridine(34) synthase MnmH, at 71,728 to 72,822
mnmH
NOLOHH_00930: NOLOHH_00930 - Transposase (Identified by ISEscan HMM), at 72,938 to 73,336
_00930
Position (kb) 71
72
73 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 70.809 kb on + strand at 70.810 kb on - strand at 70.813 kb on + strand at 70.813 kb on + strand at 70.870 kb on - strand, within allS at 70.926 kb on + strand, within allS at 70.927 kb on - strand, within allS at 70.927 kb on - strand, within allS at 70.966 kb on + strand, within allS at 71.039 kb on + strand, within allS at 71.039 kb on + strand, within allS at 71.123 kb on + strand, within allS at 71.123 kb on + strand, within allS at 71.123 kb on + strand, within allS at 71.123 kb on + strand, within allS at 71.123 kb on + strand, within allS at 71.124 kb on - strand, within allS at 71.124 kb on - strand, within allS at 71.148 kb on + strand, within allS at 71.149 kb on - strand, within allS at 71.149 kb on - strand, within allS at 71.149 kb on - strand, within allS at 71.150 kb on + strand, within allS at 71.150 kb on + strand, within allS at 71.151 kb on - strand, within allS at 71.151 kb on - strand, within allS at 71.151 kb on - strand, within allS at 71.151 kb on - strand, within allS at 71.203 kb on + strand, within allS at 71.203 kb on + strand, within allS at 71.204 kb on - strand, within allS at 71.204 kb on - strand, within allS at 71.210 kb on - strand, within allS at 71.393 kb on - strand, within allS at 71.496 kb on + strand, within allS at 71.496 kb on + strand, within allS at 71.497 kb on - strand, within allS at 71.584 kb on + strand at 71.584 kb on + strand at 71.584 kb on + strand at 71.657 kb on + strand at 71.657 kb on + strand at 71.727 kb on + strand at 71.755 kb on + strand at 71.755 kb on + strand at 71.779 kb on - strand at 71.890 kb on + strand, within mnmH at 71.964 kb on + strand, within mnmH at 71.965 kb on - strand, within mnmH at 71.967 kb on - strand, within mnmH at 71.967 kb on - strand, within mnmH at 72.006 kb on + strand, within mnmH at 72.006 kb on + strand, within mnmH at 72.006 kb on + strand, within mnmH at 72.006 kb on + strand, within mnmH at 72.007 kb on - strand, within mnmH at 72.007 kb on - strand, within mnmH at 72.042 kb on + strand, within mnmH at 72.042 kb on + strand, within mnmH at 72.042 kb on + strand, within mnmH at 72.043 kb on - strand, within mnmH at 72.043 kb on - strand, within mnmH at 72.043 kb on - strand, within mnmH at 72.043 kb on - strand, within mnmH at 72.043 kb on - strand, within mnmH at 72.100 kb on + strand, within mnmH at 72.101 kb on - strand, within mnmH at 72.102 kb on + strand, within mnmH at 72.102 kb on + strand, within mnmH at 72.158 kb on + strand, within mnmH at 72.177 kb on + strand, within mnmH at 72.200 kb on + strand, within mnmH at 72.275 kb on + strand, within mnmH at 72.329 kb on + strand, within mnmH at 72.453 kb on - strand, within mnmH at 72.532 kb on + strand, within mnmH at 72.568 kb on + strand, within mnmH at 72.611 kb on + strand, within mnmH at 72.711 kb on - strand, within mnmH at 72.722 kb on - strand at 72.737 kb on - strand at 72.737 kb on - strand at 72.832 kb on + strand at 72.832 kb on + strand at 72.832 kb on + strand at 72.832 kb on + strand at 72.833 kb on - strand at 72.833 kb on - strand at 72.838 kb on + strand at 72.947 kb on - strand at 73.049 kb on - strand, within NOLOHH_00930 at 73.129 kb on + strand, within NOLOHH_00930 at 73.173 kb on - strand, within NOLOHH_00930 at 73.239 kb on + strand, within NOLOHH_00930 at 73.318 kb on - strand at 73.334 kb on + strand at 73.344 kb on + strand at 73.345 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 70,809 + -1.5 70,810 - -0.2 70,813 + +0.8 70,813 + -0.4 70,870 - allS NOLOHH_00920 0.15 +1.0 70,926 + allS NOLOHH_00920 0.21 +0.2 70,927 - allS NOLOHH_00920 0.21 +3.0 70,927 - allS NOLOHH_00920 0.21 -0.4 70,966 + allS NOLOHH_00920 0.25 +0.4 71,039 + allS NOLOHH_00920 0.33 +0.4 71,039 + allS NOLOHH_00920 0.33 -0.0 71,123 + allS NOLOHH_00920 0.42 +0.4 71,123 + allS NOLOHH_00920 0.42 +0.7 71,123 + allS NOLOHH_00920 0.42 -0.7 71,123 + allS NOLOHH_00920 0.42 -1.1 71,123 + allS NOLOHH_00920 0.42 -0.6 71,124 - allS NOLOHH_00920 0.42 +0.6 71,124 - allS NOLOHH_00920 0.42 +0.8 71,148 + allS NOLOHH_00920 0.45 +1.4 71,149 - allS NOLOHH_00920 0.45 +0.1 71,149 - allS NOLOHH_00920 0.45 +0.1 71,149 - allS NOLOHH_00920 0.45 +0.2 71,150 + allS NOLOHH_00920 0.45 +1.3 71,150 + allS NOLOHH_00920 0.45 -0.1 71,151 - allS NOLOHH_00920 0.45 -0.6 71,151 - allS NOLOHH_00920 0.45 +0.0 71,151 - allS NOLOHH_00920 0.45 +1.4 71,151 - allS NOLOHH_00920 0.45 +1.2 71,203 + allS NOLOHH_00920 0.51 +2.4 71,203 + allS NOLOHH_00920 0.51 +1.4 71,204 - allS NOLOHH_00920 0.51 +0.9 71,204 - allS NOLOHH_00920 0.51 -1.9 71,210 - allS NOLOHH_00920 0.51 +0.7 71,393 - allS NOLOHH_00920 0.71 -1.1 71,496 + allS NOLOHH_00920 0.82 +1.5 71,496 + allS NOLOHH_00920 0.82 -1.6 71,497 - allS NOLOHH_00920 0.82 +0.4 71,584 + +0.5 71,584 + -0.8 71,584 + -0.3 71,657 + +0.6 71,657 + +1.4 71,727 + -0.5 71,755 + -0.7 71,755 + -0.1 71,779 - +0.4 71,890 + mnmH NOLOHH_00925 0.15 +0.2 71,964 + mnmH NOLOHH_00925 0.22 +0.2 71,965 - mnmH NOLOHH_00925 0.22 +0.9 71,967 - mnmH NOLOHH_00925 0.22 -0.7 71,967 - mnmH NOLOHH_00925 0.22 -0.4 72,006 + mnmH NOLOHH_00925 0.25 +0.4 72,006 + mnmH NOLOHH_00925 0.25 -1.1 72,006 + mnmH NOLOHH_00925 0.25 +1.0 72,006 + mnmH NOLOHH_00925 0.25 +0.9 72,007 - mnmH NOLOHH_00925 0.25 +0.4 72,007 - mnmH NOLOHH_00925 0.25 +0.1 72,042 + mnmH NOLOHH_00925 0.29 -0.1 72,042 + mnmH NOLOHH_00925 0.29 +0.7 72,042 + mnmH NOLOHH_00925 0.29 -0.6 72,043 - mnmH NOLOHH_00925 0.29 +0.1 72,043 - mnmH NOLOHH_00925 0.29 -0.3 72,043 - mnmH NOLOHH_00925 0.29 +1.8 72,043 - mnmH NOLOHH_00925 0.29 +0.3 72,043 - mnmH NOLOHH_00925 0.29 +0.8 72,100 + mnmH NOLOHH_00925 0.34 -0.1 72,101 - mnmH NOLOHH_00925 0.34 +0.1 72,102 + mnmH NOLOHH_00925 0.34 -0.1 72,102 + mnmH NOLOHH_00925 0.34 +0.4 72,158 + mnmH NOLOHH_00925 0.39 +0.9 72,177 + mnmH NOLOHH_00925 0.41 -0.1 72,200 + mnmH NOLOHH_00925 0.43 -0.9 72,275 + mnmH NOLOHH_00925 0.50 +0.1 72,329 + mnmH NOLOHH_00925 0.55 +1.4 72,453 - mnmH NOLOHH_00925 0.66 +1.9 72,532 + mnmH NOLOHH_00925 0.73 +0.4 72,568 + mnmH NOLOHH_00925 0.77 +0.2 72,611 + mnmH NOLOHH_00925 0.81 +0.9 72,711 - mnmH NOLOHH_00925 0.90 +0.0 72,722 - +0.6 72,737 - -0.3 72,737 - -0.6 72,832 + -0.6 72,832 + -0.0 72,832 + +0.2 72,832 + +0.0 72,833 - -0.0 72,833 - +0.4 72,838 + -0.6 72,947 - +0.4 73,049 - NOLOHH_00930 0.28 +0.2 73,129 + NOLOHH_00930 0.48 -0.6 73,173 - NOLOHH_00930 0.59 +0.6 73,239 + NOLOHH_00930 0.75 +0.1 73,318 - +0.7 73,334 + -0.7 73,344 + +0.7 73,345 - -0.4
Or see this region's nucleotide sequence