Strain Fitness in Escherichia coli ECOR27 around NOLOHH_00860

Experiment: K5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntallD and allC are separated by 21 nucleotidesallC and allE are separated by 10 nucleotidesallE and glxK are separated by 128 nucleotides NOLOHH_00855: allD - ureidoglycolate dehydrogenase, at 56,690 to 57,739 allD NOLOHH_00860: allC - allantoate deiminase, at 57,761 to 58,996 allC NOLOHH_00865: allE - (S)-ureidoglycine aminohydrolase, at 59,007 to 59,792 allE NOLOHH_00875: glxK - glycerate 3-kinase, at 59,921 to 61,066 glxK Position (kb) 57 58 59Strain fitness (log2 ratio) -2 -1 0 1 2 3at 56.926 kb on - strand, within allDat 57.053 kb on + strand, within allDat 57.150 kb on - strand, within allDat 57.154 kb on + strand, within allDat 57.203 kb on - strand, within allDat 57.203 kb on - strand, within allDat 57.265 kb on + strand, within allDat 57.265 kb on + strand, within allDat 57.265 kb on + strand, within allDat 57.265 kb on + strand, within allDat 57.265 kb on + strand, within allDat 57.265 kb on + strand, within allDat 57.265 kb on + strand, within allDat 57.266 kb on - strand, within allDat 57.266 kb on - strand, within allDat 57.266 kb on - strand, within allDat 57.266 kb on - strand, within allDat 57.330 kb on + strand, within allDat 57.330 kb on + strand, within allDat 57.330 kb on + strand, within allDat 57.486 kb on + strand, within allDat 57.523 kb on - strand, within allDat 57.597 kb on - strand, within allDat 57.623 kb on - strand, within allDat 57.671 kb on + strandat 57.681 kb on + strandat 57.737 kb on + strandat 57.946 kb on - strand, within allCat 57.947 kb on + strand, within allCat 58.109 kb on - strand, within allCat 58.157 kb on + strand, within allCat 58.158 kb on - strand, within allCat 58.158 kb on - strand, within allCat 58.175 kb on - strand, within allCat 58.309 kb on + strand, within allCat 58.331 kb on - strand, within allCat 58.357 kb on + strand, within allCat 58.408 kb on + strand, within allCat 58.409 kb on - strand, within allCat 58.409 kb on - strand, within allCat 58.478 kb on + strand, within allCat 58.560 kb on + strand, within allCat 58.561 kb on - strand, within allCat 58.561 kb on - strand, within allCat 58.582 kb on - strand, within allCat 58.666 kb on - strand, within allCat 58.927 kb on + strandat 58.927 kb on + strandat 59.004 kb on + strandat 59.017 kb on + strandat 59.018 kb on - strandat 59.092 kb on + strand, within allEat 59.190 kb on + strand, within allEat 59.190 kb on + strand, within allEat 59.279 kb on + strand, within allEat 59.280 kb on - strand, within allEat 59.335 kb on - strand, within allEat 59.398 kb on + strand, within allEat 59.400 kb on + strand, within allEat 59.403 kb on - strand, within allEat 59.403 kb on - strand, within allEat 59.403 kb on - strand, within allEat 59.481 kb on + strand, within allEat 59.482 kb on - strand, within allEat 59.552 kb on + strand, within allEat 59.586 kb on + strand, within allEat 59.694 kb on - strand, within allEat 59.751 kb on + strandat 59.751 kb on + strandat 59.790 kb on + strandat 59.822 kb on + strandat 59.845 kb on - strandat 59.942 kb on + strandat 59.943 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction K5
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56,926 - allD NOLOHH_00855 0.22 -2.1
57,053 + allD NOLOHH_00855 0.35 -1.6
57,150 - allD NOLOHH_00855 0.44 +2.4
57,154 + allD NOLOHH_00855 0.44 -0.3
57,203 - allD NOLOHH_00855 0.49 -1.0
57,203 - allD NOLOHH_00855 0.49 -0.8
57,265 + allD NOLOHH_00855 0.55 -1.1
57,265 + allD NOLOHH_00855 0.55 -0.0
57,265 + allD NOLOHH_00855 0.55 +0.0
57,265 + allD NOLOHH_00855 0.55 -0.6
57,265 + allD NOLOHH_00855 0.55 +1.3
57,265 + allD NOLOHH_00855 0.55 +1.8
57,265 + allD NOLOHH_00855 0.55 +0.2
57,266 - allD NOLOHH_00855 0.55 +1.1
57,266 - allD NOLOHH_00855 0.55 +3.0
57,266 - allD NOLOHH_00855 0.55 +0.0
57,266 - allD NOLOHH_00855 0.55 +0.4
57,330 + allD NOLOHH_00855 0.61 +0.6
57,330 + allD NOLOHH_00855 0.61 +0.4
57,330 + allD NOLOHH_00855 0.61 +0.4
57,486 + allD NOLOHH_00855 0.76 +0.9
57,523 - allD NOLOHH_00855 0.79 +0.9
57,597 - allD NOLOHH_00855 0.86 +0.4
57,623 - allD NOLOHH_00855 0.89 +0.9
57,671 + +0.1
57,681 + +0.1
57,737 + +0.8
57,946 - allC NOLOHH_00860 0.15 +1.0
57,947 + allC NOLOHH_00860 0.15 -0.6
58,109 - allC NOLOHH_00860 0.28 -1.7
58,157 + allC NOLOHH_00860 0.32 -1.6
58,158 - allC NOLOHH_00860 0.32 +0.8
58,158 - allC NOLOHH_00860 0.32 +1.4
58,175 - allC NOLOHH_00860 0.33 -1.4
58,309 + allC NOLOHH_00860 0.44 +0.0
58,331 - allC NOLOHH_00860 0.46 +1.4
58,357 + allC NOLOHH_00860 0.48 +1.7
58,408 + allC NOLOHH_00860 0.52 -1.4
58,409 - allC NOLOHH_00860 0.52 -0.1
58,409 - allC NOLOHH_00860 0.52 -0.4
58,478 + allC NOLOHH_00860 0.58 -1.0
58,560 + allC NOLOHH_00860 0.65 +1.8
58,561 - allC NOLOHH_00860 0.65 +0.2
58,561 - allC NOLOHH_00860 0.65 -0.3
58,582 - allC NOLOHH_00860 0.66 +0.4
58,666 - allC NOLOHH_00860 0.73 -0.8
58,927 + +0.3
58,927 + +1.4
59,004 + +0.4
59,017 + +0.4
59,018 - -0.4
59,092 + allE NOLOHH_00865 0.11 +0.4
59,190 + allE NOLOHH_00865 0.23 +0.6
59,190 + allE NOLOHH_00865 0.23 -0.0
59,279 + allE NOLOHH_00865 0.35 -0.6
59,280 - allE NOLOHH_00865 0.35 -1.6
59,335 - allE NOLOHH_00865 0.42 -1.1
59,398 + allE NOLOHH_00865 0.50 +1.4
59,400 + allE NOLOHH_00865 0.50 +2.0
59,403 - allE NOLOHH_00865 0.50 -0.4
59,403 - allE NOLOHH_00865 0.50 -0.6
59,403 - allE NOLOHH_00865 0.50 +0.2
59,481 + allE NOLOHH_00865 0.60 +0.1
59,482 - allE NOLOHH_00865 0.60 -0.2
59,552 + allE NOLOHH_00865 0.69 -1.4
59,586 + allE NOLOHH_00865 0.74 -0.3
59,694 - allE NOLOHH_00865 0.87 +0.4
59,751 + -1.1
59,751 + -0.6
59,790 + +0.1
59,822 + +1.4
59,845 - +0.4
59,942 + -1.4
59,943 - +0.8

Or see this region's nucleotide sequence