Strain Fitness in Escherichia coli ECOR27 around NOLOHH_00290

Experiment: K5

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntNOLOHH_00275 and NOLOHH_00280 overlap by 4 nucleotidesNOLOHH_00280 and NOLOHH_00285 are separated by 61 nucleotidesNOLOHH_00285 and NOLOHH_00290 are separated by 13 nucleotidesNOLOHH_00290 and virB11 overlap by 14 nucleotides NOLOHH_00275: NOLOHH_00275 - Conjugal transfer protein, at 5,072 to 5,377 _00275 NOLOHH_00280: NOLOHH_00280 - hypothetical protein, at 5,374 to 5,622 _00280 NOLOHH_00285: NOLOHH_00285 - cag pathogenicity island Cag12 family protein, at 5,684 to 6,220 _00285 NOLOHH_00290: NOLOHH_00290 - conjugal transfer protein TraG, at 6,234 to 8,066 _00290 NOLOHH_00295: virB11 - P-type DNA transfer ATPase VirB11, at 8,053 to 9,087 virB11 Position (kb) 6 7 8 9Strain fitness (log2 ratio) -2 -1 0 1at 5.262 kb on - strand, within NOLOHH_00275at 5.270 kb on - strand, within NOLOHH_00275at 5.283 kb on - strand, within NOLOHH_00275at 5.283 kb on - strand, within NOLOHH_00275at 5.330 kb on - strand, within NOLOHH_00275at 5.404 kb on - strand, within NOLOHH_00280at 5.659 kb on + strandat 5.659 kb on + strandat 5.660 kb on - strandat 5.723 kb on - strandat 5.847 kb on + strand, within NOLOHH_00285at 6.303 kb on - strandat 6.394 kb on + strandat 6.543 kb on - strand, within NOLOHH_00290at 6.551 kb on + strand, within NOLOHH_00290at 6.552 kb on - strand, within NOLOHH_00290at 6.582 kb on - strand, within NOLOHH_00290at 6.590 kb on + strand, within NOLOHH_00290at 6.598 kb on - strand, within NOLOHH_00290at 6.643 kb on + strand, within NOLOHH_00290at 6.643 kb on + strand, within NOLOHH_00290at 6.708 kb on - strand, within NOLOHH_00290at 6.791 kb on + strand, within NOLOHH_00290at 6.793 kb on + strand, within NOLOHH_00290at 6.985 kb on - strand, within NOLOHH_00290at 7.099 kb on + strand, within NOLOHH_00290at 7.170 kb on + strand, within NOLOHH_00290at 7.170 kb on + strand, within NOLOHH_00290at 7.289 kb on + strand, within NOLOHH_00290at 7.325 kb on + strand, within NOLOHH_00290at 7.326 kb on - strand, within NOLOHH_00290at 7.510 kb on - strand, within NOLOHH_00290at 7.510 kb on - strand, within NOLOHH_00290at 7.527 kb on - strand, within NOLOHH_00290at 7.553 kb on + strand, within NOLOHH_00290at 7.572 kb on - strand, within NOLOHH_00290at 7.672 kb on - strand, within NOLOHH_00290at 7.805 kb on + strand, within NOLOHH_00290at 7.869 kb on - strand, within NOLOHH_00290at 7.871 kb on + strand, within NOLOHH_00290at 7.896 kb on + strandat 7.897 kb on - strandat 7.981 kb on + strandat 8.107 kb on - strandat 8.151 kb on + strandat 8.201 kb on + strand, within virB11at 8.223 kb on + strand, within virB11at 8.224 kb on - strand, within virB11at 8.360 kb on - strand, within virB11at 8.383 kb on - strand, within virB11at 8.387 kb on + strand, within virB11at 8.400 kb on + strand, within virB11at 8.453 kb on + strand, within virB11at 8.539 kb on - strand, within virB11at 8.659 kb on + strand, within virB11at 8.839 kb on - strand, within virB11at 8.842 kb on + strand, within virB11at 8.900 kb on - strand, within virB11at 8.977 kb on - strand, within virB11at 9.059 kb on + strandat 9.060 kb on - strandat 9.060 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction K5
remove
5,262 - NOLOHH_00275 0.62 +0.3
5,270 - NOLOHH_00275 0.65 +0.2
5,283 - NOLOHH_00275 0.69 +0.3
5,283 - NOLOHH_00275 0.69 +0.3
5,330 - NOLOHH_00275 0.84 +0.5
5,404 - NOLOHH_00280 0.12 -0.0
5,659 + +0.7
5,659 + +0.1
5,660 - -0.1
5,723 - -1.6
5,847 + NOLOHH_00285 0.30 -0.4
6,303 - +0.2
6,394 + -0.1
6,543 - NOLOHH_00290 0.17 +1.2
6,551 + NOLOHH_00290 0.17 -0.0
6,552 - NOLOHH_00290 0.17 -0.7
6,582 - NOLOHH_00290 0.19 -0.9
6,590 + NOLOHH_00290 0.19 -0.6
6,598 - NOLOHH_00290 0.20 +0.7
6,643 + NOLOHH_00290 0.22 +0.8
6,643 + NOLOHH_00290 0.22 +0.8
6,708 - NOLOHH_00290 0.26 -2.7
6,791 + NOLOHH_00290 0.30 -0.2
6,793 + NOLOHH_00290 0.30 -0.0
6,985 - NOLOHH_00290 0.41 +0.4
7,099 + NOLOHH_00290 0.47 -0.0
7,170 + NOLOHH_00290 0.51 +0.2
7,170 + NOLOHH_00290 0.51 +0.1
7,289 + NOLOHH_00290 0.58 +0.8
7,325 + NOLOHH_00290 0.60 +0.3
7,326 - NOLOHH_00290 0.60 -0.4
7,510 - NOLOHH_00290 0.70 -0.6
7,510 - NOLOHH_00290 0.70 +0.7
7,527 - NOLOHH_00290 0.71 -0.6
7,553 + NOLOHH_00290 0.72 +0.2
7,572 - NOLOHH_00290 0.73 -0.7
7,672 - NOLOHH_00290 0.78 +0.2
7,805 + NOLOHH_00290 0.86 +0.3
7,869 - NOLOHH_00290 0.89 -0.1
7,871 + NOLOHH_00290 0.89 -0.5
7,896 + -0.4
7,897 - +0.5
7,981 + -0.1
8,107 - +0.2
8,151 + +0.5
8,201 + virB11 NOLOHH_00295 0.14 +0.2
8,223 + virB11 NOLOHH_00295 0.16 +0.8
8,224 - virB11 NOLOHH_00295 0.17 +0.0
8,360 - virB11 NOLOHH_00295 0.30 -0.3
8,383 - virB11 NOLOHH_00295 0.32 -0.9
8,387 + virB11 NOLOHH_00295 0.32 +0.0
8,400 + virB11 NOLOHH_00295 0.34 -0.5
8,453 + virB11 NOLOHH_00295 0.39 +0.7
8,539 - virB11 NOLOHH_00295 0.47 -1.4
8,659 + virB11 NOLOHH_00295 0.59 +1.4
8,839 - virB11 NOLOHH_00295 0.76 +0.2
8,842 + virB11 NOLOHH_00295 0.76 +0.4
8,900 - virB11 NOLOHH_00295 0.82 -0.2
8,977 - virB11 NOLOHH_00295 0.89 -0.4
9,059 + +0.1
9,060 - -0.9
9,060 - -0.9

Or see this region's nucleotide sequence