Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_12930

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrpoH and ung are separated by 159 nucleotidesung and pleD overlap by 4 nucleotidespleD and ftsX are separated by 138 nucleotides OKGIIK_12925: rpoH - RNA polymerase sigma factor RpoH, at 2,789,595 to 2,790,458 rpoH OKGIIK_12930: ung - uracil-DNA glycosylase, at 2,790,618 to 2,791,340 ung OKGIIK_12935: pleD - response regulator, at 2,791,337 to 2,792,179 pleD OKGIIK_12940: ftsX - permease-like cell division protein FtsX, at 2,792,318 to 2,793,298 ftsX Position (kb) 2790 2791 2792Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2790.477 kb on - strandat 2790.477 kb on - strandat 2790.477 kb on - strandat 2790.477 kb on - strandat 2790.477 kb on - strandat 2790.489 kb on + strandat 2790.512 kb on + strandat 2790.513 kb on - strandat 2790.700 kb on + strand, within ungat 2790.701 kb on - strand, within ungat 2790.826 kb on + strand, within ungat 2790.826 kb on + strand, within ungat 2790.826 kb on + strand, within ungat 2790.826 kb on + strand, within ungat 2790.826 kb on + strand, within ungat 2790.826 kb on + strand, within ungat 2790.826 kb on + strand, within ungat 2790.826 kb on + strand, within ungat 2790.826 kb on + strand, within ungat 2790.826 kb on + strand, within ungat 2790.826 kb on + strand, within ungat 2790.826 kb on + strand, within ungat 2790.826 kb on + strand, within ungat 2790.826 kb on + strand, within ungat 2790.826 kb on + strand, within ungat 2790.826 kb on + strand, within ungat 2790.826 kb on + strand, within ungat 2790.826 kb on + strand, within ungat 2790.826 kb on + strand, within ungat 2790.826 kb on + strand, within ungat 2790.826 kb on + strand, within ungat 2790.826 kb on + strand, within ungat 2790.826 kb on + strand, within ungat 2790.827 kb on - strand, within ungat 2790.827 kb on - strand, within ungat 2790.827 kb on - strand, within ungat 2790.827 kb on - strand, within ungat 2790.827 kb on - strand, within ungat 2790.827 kb on - strand, within ungat 2790.827 kb on - strand, within ungat 2790.827 kb on - strand, within ungat 2790.827 kb on - strand, within ungat 2790.827 kb on - strand, within ungat 2790.827 kb on - strand, within ungat 2790.827 kb on - strand, within ungat 2790.827 kb on - strand, within ungat 2790.827 kb on - strand, within ungat 2790.827 kb on - strand, within ungat 2790.827 kb on - strand, within ungat 2790.827 kb on - strand, within ungat 2790.827 kb on - strand, within ungat 2790.827 kb on - strand, within ungat 2790.827 kb on - strand, within ungat 2790.827 kb on - strand, within ungat 2790.827 kb on - strand, within ungat 2790.827 kb on - strand, within ungat 2790.827 kb on - strand, within ungat 2790.827 kb on - strand, within ungat 2790.827 kb on - strand, within ungat 2791.074 kb on + strand, within ungat 2791.074 kb on + strand, within ungat 2791.075 kb on - strand, within ungat 2791.126 kb on + strand, within ungat 2791.210 kb on + strand, within ungat 2791.210 kb on + strand, within ungat 2791.211 kb on - strand, within ungat 2791.211 kb on - strand, within ungat 2791.211 kb on - strand, within ungat 2791.211 kb on - strand, within ungat 2791.275 kb on + strandat 2791.275 kb on + strandat 2791.275 kb on + strandat 2791.275 kb on + strandat 2791.275 kb on + strandat 2791.275 kb on + strandat 2791.275 kb on + strandat 2791.275 kb on + strandat 2791.275 kb on + strandat 2791.275 kb on + strandat 2791.276 kb on - strandat 2791.276 kb on - strandat 2791.276 kb on - strandat 2791.276 kb on - strandat 2791.276 kb on - strandat 2791.276 kb on - strandat 2791.276 kb on - strandat 2791.276 kb on - strandat 2791.276 kb on - strandat 2791.282 kb on + strandat 2791.282 kb on + strandat 2791.282 kb on + strandat 2791.282 kb on + strandat 2791.282 kb on + strandat 2791.282 kb on + strandat 2791.282 kb on + strandat 2791.283 kb on - strandat 2791.283 kb on - strandat 2791.283 kb on - strandat 2791.661 kb on + strand, within pleDat 2791.661 kb on + strand, within pleDat 2791.661 kb on + strand, within pleDat 2791.661 kb on + strand, within pleDat 2791.661 kb on + strand, within pleDat 2791.662 kb on - strand, within pleDat 2791.662 kb on - strand, within pleDat 2791.662 kb on - strand, within pleDat 2791.662 kb on - strand, within pleDat 2791.746 kb on + strand, within pleDat 2791.746 kb on + strand, within pleDat 2791.746 kb on + strand, within pleDat 2791.747 kb on - strand, within pleDat 2791.747 kb on - strand, within pleDat 2791.747 kb on - strand, within pleDat 2791.747 kb on - strand, within pleDat 2791.747 kb on - strand, within pleDat 2791.747 kb on - strand, within pleDat 2791.747 kb on - strand, within pleDat 2791.747 kb on - strand, within pleDat 2791.747 kb on - strand, within pleDat 2791.747 kb on - strand, within pleDat 2791.747 kb on - strand, within pleDat 2791.747 kb on - strand, within pleDat 2791.785 kb on + strand, within pleDat 2791.785 kb on + strand, within pleDat 2791.785 kb on + strand, within pleDat 2791.785 kb on + strand, within pleDat 2791.785 kb on + strand, within pleDat 2791.786 kb on - strand, within pleDat 2791.786 kb on - strand, within pleDat 2791.836 kb on + strand, within pleDat 2791.836 kb on + strand, within pleDat 2791.836 kb on + strand, within pleDat 2791.836 kb on + strand, within pleDat 2791.836 kb on + strand, within pleDat 2791.837 kb on - strand, within pleDat 2791.837 kb on - strand, within pleDat 2791.837 kb on - strand, within pleDat 2791.837 kb on - strand, within pleDat 2791.837 kb on - strand, within pleDat 2791.837 kb on - strand, within pleDat 2791.837 kb on - strand, within pleDat 2791.837 kb on - strand, within pleDat 2791.914 kb on + strand, within pleDat 2791.914 kb on + strand, within pleDat 2791.914 kb on + strand, within pleDat 2791.914 kb on + strand, within pleDat 2791.914 kb on + strand, within pleDat 2791.915 kb on - strand, within pleDat 2791.915 kb on - strand, within pleDat 2791.915 kb on - strand, within pleDat 2791.915 kb on - strand, within pleDat 2791.915 kb on - strand, within pleDat 2791.915 kb on - strand, within pleDat 2791.915 kb on - strand, within pleDat 2791.915 kb on - strand, within pleDat 2791.915 kb on - strand, within pleDat 2792.105 kb on + strandat 2792.105 kb on + strandat 2792.105 kb on + strandat 2792.105 kb on + strandat 2792.105 kb on + strandat 2792.105 kb on + strandat 2792.106 kb on - strandat 2792.106 kb on - strandat 2792.106 kb on - strandat 2792.167 kb on + strandat 2792.167 kb on + strandat 2792.168 kb on - strandat 2792.168 kb on - strandat 2792.173 kb on + strandat 2792.173 kb on + strandat 2792.173 kb on + strandat 2792.173 kb on + strandat 2792.173 kb on + strandat 2792.173 kb on + strandat 2792.173 kb on + strandat 2792.173 kb on + strandat 2792.173 kb on + strandat 2792.174 kb on - strandat 2792.174 kb on - strandat 2792.174 kb on - strandat 2792.174 kb on - strandat 2792.174 kb on - strandat 2792.174 kb on - strandat 2792.174 kb on - strandat 2792.174 kb on - strandat 2792.174 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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2,790,477 - +1.0
2,790,477 - -0.6
2,790,477 - -0.7
2,790,477 - -0.5
2,790,477 - -0.8
2,790,489 + -3.5
2,790,512 + -0.4
2,790,513 - -0.1
2,790,700 + ung OKGIIK_12930 0.11 -1.8
2,790,701 - ung OKGIIK_12930 0.11 -1.3
2,790,826 + ung OKGIIK_12930 0.29 -0.8
2,790,826 + ung OKGIIK_12930 0.29 +0.5
2,790,826 + ung OKGIIK_12930 0.29 -1.6
2,790,826 + ung OKGIIK_12930 0.29 -0.0
2,790,826 + ung OKGIIK_12930 0.29 +0.2
2,790,826 + ung OKGIIK_12930 0.29 -0.4
2,790,826 + ung OKGIIK_12930 0.29 -1.1
2,790,826 + ung OKGIIK_12930 0.29 -0.6
2,790,826 + ung OKGIIK_12930 0.29 -0.0
2,790,826 + ung OKGIIK_12930 0.29 -0.3
2,790,826 + ung OKGIIK_12930 0.29 +0.6
2,790,826 + ung OKGIIK_12930 0.29 -0.2
2,790,826 + ung OKGIIK_12930 0.29 -0.1
2,790,826 + ung OKGIIK_12930 0.29 +1.0
2,790,826 + ung OKGIIK_12930 0.29 -0.4
2,790,826 + ung OKGIIK_12930 0.29 -2.3
2,790,826 + ung OKGIIK_12930 0.29 -1.4
2,790,826 + ung OKGIIK_12930 0.29 -0.8
2,790,826 + ung OKGIIK_12930 0.29 -0.4
2,790,826 + ung OKGIIK_12930 0.29 -1.1
2,790,826 + ung OKGIIK_12930 0.29 +0.3
2,790,826 + ung OKGIIK_12930 0.29 +0.9
2,790,826 + ung OKGIIK_12930 0.29 -1.4
2,790,827 - ung OKGIIK_12930 0.29 -1.0
2,790,827 - ung OKGIIK_12930 0.29 +0.2
2,790,827 - ung OKGIIK_12930 0.29 -0.4
2,790,827 - ung OKGIIK_12930 0.29 +0.2
2,790,827 - ung OKGIIK_12930 0.29 -0.0
2,790,827 - ung OKGIIK_12930 0.29 -0.8
2,790,827 - ung OKGIIK_12930 0.29 +0.5
2,790,827 - ung OKGIIK_12930 0.29 -1.3
2,790,827 - ung OKGIIK_12930 0.29 +0.8
2,790,827 - ung OKGIIK_12930 0.29 -2.8
2,790,827 - ung OKGIIK_12930 0.29 +0.6
2,790,827 - ung OKGIIK_12930 0.29 +0.7
2,790,827 - ung OKGIIK_12930 0.29 -0.9
2,790,827 - ung OKGIIK_12930 0.29 -0.3
2,790,827 - ung OKGIIK_12930 0.29 -0.8
2,790,827 - ung OKGIIK_12930 0.29 -0.6
2,790,827 - ung OKGIIK_12930 0.29 +1.8
2,790,827 - ung OKGIIK_12930 0.29 +0.4
2,790,827 - ung OKGIIK_12930 0.29 -0.8
2,790,827 - ung OKGIIK_12930 0.29 +0.6
2,790,827 - ung OKGIIK_12930 0.29 -0.8
2,790,827 - ung OKGIIK_12930 0.29 +0.2
2,790,827 - ung OKGIIK_12930 0.29 +0.2
2,790,827 - ung OKGIIK_12930 0.29 -0.4
2,790,827 - ung OKGIIK_12930 0.29 -0.4
2,790,827 - ung OKGIIK_12930 0.29 +0.3
2,791,074 + ung OKGIIK_12930 0.63 +0.8
2,791,074 + ung OKGIIK_12930 0.63 -0.4
2,791,075 - ung OKGIIK_12930 0.63 -0.3
2,791,126 + ung OKGIIK_12930 0.70 -2.5
2,791,210 + ung OKGIIK_12930 0.82 +0.4
2,791,210 + ung OKGIIK_12930 0.82 -0.8
2,791,211 - ung OKGIIK_12930 0.82 -0.7
2,791,211 - ung OKGIIK_12930 0.82 -0.5
2,791,211 - ung OKGIIK_12930 0.82 +0.6
2,791,211 - ung OKGIIK_12930 0.82 +0.2
2,791,275 + -1.4
2,791,275 + +0.0
2,791,275 + -0.4
2,791,275 + -0.6
2,791,275 + -1.1
2,791,275 + -2.6
2,791,275 + +0.4
2,791,275 + +0.9
2,791,275 + +1.0
2,791,275 + -0.1
2,791,276 - -0.7
2,791,276 - +0.4
2,791,276 - -1.8
2,791,276 - +0.9
2,791,276 - -0.7
2,791,276 - -0.1
2,791,276 - -0.0
2,791,276 - +1.1
2,791,276 - +0.2
2,791,282 + +1.4
2,791,282 + -1.4
2,791,282 + +0.2
2,791,282 + +0.8
2,791,282 + -1.6
2,791,282 + +0.2
2,791,282 + -1.0
2,791,283 - +0.8
2,791,283 - +0.6
2,791,283 - +0.3
2,791,661 + pleD OKGIIK_12935 0.38 -0.4
2,791,661 + pleD OKGIIK_12935 0.38 -1.0
2,791,661 + pleD OKGIIK_12935 0.38 -1.1
2,791,661 + pleD OKGIIK_12935 0.38 -0.0
2,791,661 + pleD OKGIIK_12935 0.38 +0.6
2,791,662 - pleD OKGIIK_12935 0.39 +0.6
2,791,662 - pleD OKGIIK_12935 0.39 +0.8
2,791,662 - pleD OKGIIK_12935 0.39 -0.3
2,791,662 - pleD OKGIIK_12935 0.39 +0.8
2,791,746 + pleD OKGIIK_12935 0.49 +0.2
2,791,746 + pleD OKGIIK_12935 0.49 -2.1
2,791,746 + pleD OKGIIK_12935 0.49 -1.3
2,791,747 - pleD OKGIIK_12935 0.49 +0.5
2,791,747 - pleD OKGIIK_12935 0.49 -2.3
2,791,747 - pleD OKGIIK_12935 0.49 -0.2
2,791,747 - pleD OKGIIK_12935 0.49 -2.4
2,791,747 - pleD OKGIIK_12935 0.49 +0.0
2,791,747 - pleD OKGIIK_12935 0.49 -2.0
2,791,747 - pleD OKGIIK_12935 0.49 -0.6
2,791,747 - pleD OKGIIK_12935 0.49 -0.8
2,791,747 - pleD OKGIIK_12935 0.49 +0.2
2,791,747 - pleD OKGIIK_12935 0.49 -0.4
2,791,747 - pleD OKGIIK_12935 0.49 +0.4
2,791,747 - pleD OKGIIK_12935 0.49 +0.4
2,791,785 + pleD OKGIIK_12935 0.53 +0.4
2,791,785 + pleD OKGIIK_12935 0.53 -0.3
2,791,785 + pleD OKGIIK_12935 0.53 -0.0
2,791,785 + pleD OKGIIK_12935 0.53 -0.5
2,791,785 + pleD OKGIIK_12935 0.53 +0.7
2,791,786 - pleD OKGIIK_12935 0.53 +0.7
2,791,786 - pleD OKGIIK_12935 0.53 -1.0
2,791,836 + pleD OKGIIK_12935 0.59 -1.4
2,791,836 + pleD OKGIIK_12935 0.59 -0.4
2,791,836 + pleD OKGIIK_12935 0.59 -1.1
2,791,836 + pleD OKGIIK_12935 0.59 -1.1
2,791,836 + pleD OKGIIK_12935 0.59 +0.5
2,791,837 - pleD OKGIIK_12935 0.59 +0.2
2,791,837 - pleD OKGIIK_12935 0.59 -1.3
2,791,837 - pleD OKGIIK_12935 0.59 +0.6
2,791,837 - pleD OKGIIK_12935 0.59 -1.8
2,791,837 - pleD OKGIIK_12935 0.59 +0.4
2,791,837 - pleD OKGIIK_12935 0.59 -0.2
2,791,837 - pleD OKGIIK_12935 0.59 -0.4
2,791,837 - pleD OKGIIK_12935 0.59 +1.0
2,791,914 + pleD OKGIIK_12935 0.68 +0.2
2,791,914 + pleD OKGIIK_12935 0.68 -1.1
2,791,914 + pleD OKGIIK_12935 0.68 +0.0
2,791,914 + pleD OKGIIK_12935 0.68 +1.9
2,791,914 + pleD OKGIIK_12935 0.68 +0.1
2,791,915 - pleD OKGIIK_12935 0.69 -0.8
2,791,915 - pleD OKGIIK_12935 0.69 +0.9
2,791,915 - pleD OKGIIK_12935 0.69 -2.0
2,791,915 - pleD OKGIIK_12935 0.69 -0.4
2,791,915 - pleD OKGIIK_12935 0.69 -0.8
2,791,915 - pleD OKGIIK_12935 0.69 +1.2
2,791,915 - pleD OKGIIK_12935 0.69 -0.3
2,791,915 - pleD OKGIIK_12935 0.69 -0.3
2,791,915 - pleD OKGIIK_12935 0.69 -0.5
2,792,105 + -0.1
2,792,105 + +0.6
2,792,105 + -1.4
2,792,105 + +0.5
2,792,105 + +0.6
2,792,105 + +0.9
2,792,106 - +0.2
2,792,106 - +0.8
2,792,106 - -0.3
2,792,167 + +0.7
2,792,167 + +0.8
2,792,168 - -1.8
2,792,168 - -0.4
2,792,173 + +1.1
2,792,173 + -3.0
2,792,173 + -1.0
2,792,173 + +0.4
2,792,173 + +1.0
2,792,173 + -0.8
2,792,173 + +0.7
2,792,173 + -0.1
2,792,173 + -0.4
2,792,174 - +0.9
2,792,174 - -1.5
2,792,174 - +0.9
2,792,174 - -0.2
2,792,174 - +1.9
2,792,174 - -0.5
2,792,174 - +0.6
2,792,174 - -2.0
2,792,174 - +0.2

Or see this region's nucleotide sequence