Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_11450

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntettA and pyrF are separated by 103 nucleotidespyrF and OKGIIK_11455 are separated by 24 nucleotidesOKGIIK_11455 and OKGIIK_11460 are separated by 200 nucleotides OKGIIK_11445: ettA - energy-dependent translational throttle protein EttA, at 2,457,626 to 2,459,293 ettA OKGIIK_11450: pyrF - orotidine-5'-phosphate decarboxylase, at 2,459,397 to 2,460,215 pyrF OKGIIK_11455: OKGIIK_11455 - hypothetical protein, at 2,460,240 to 2,460,497 _11455 OKGIIK_11460: OKGIIK_11460 - hypothetical protein, at 2,460,698 to 2,461,072 _11460 Position (kb) 2459 2460 2461Strain fitness (log2 ratio) -2 -1 0 1at 2458.533 kb on - strand, within ettAat 2458.796 kb on + strand, within ettAat 2458.796 kb on + strand, within ettAat 2458.796 kb on + strand, within ettAat 2458.797 kb on - strand, within ettAat 2458.797 kb on - strand, within ettAat 2458.907 kb on + strand, within ettAat 2458.907 kb on + strand, within ettAat 2458.907 kb on + strand, within ettAat 2458.907 kb on + strand, within ettAat 2458.907 kb on + strand, within ettAat 2458.908 kb on - strand, within ettAat 2458.908 kb on - strand, within ettAat 2459.207 kb on + strandat 2459.207 kb on + strandat 2459.208 kb on - strandat 2459.208 kb on - strandat 2459.208 kb on - strandat 2459.208 kb on - strandat 2459.208 kb on - strandat 2459.216 kb on + strandat 2459.216 kb on + strandat 2459.217 kb on - strandat 2459.217 kb on - strandat 2459.276 kb on + strandat 2459.276 kb on + strandat 2459.276 kb on + strandat 2459.277 kb on - strandat 2459.277 kb on - strandat 2459.277 kb on - strandat 2459.277 kb on - strandat 2459.292 kb on - strandat 2459.292 kb on - strandat 2459.292 kb on - strandat 2459.292 kb on - strandat 2459.307 kb on + strandat 2459.307 kb on + strandat 2459.307 kb on + strandat 2459.307 kb on + strandat 2459.307 kb on + strandat 2459.307 kb on + strandat 2459.308 kb on - strandat 2459.308 kb on - strandat 2459.308 kb on - strandat 2460.352 kb on + strand, within OKGIIK_11455at 2460.352 kb on + strand, within OKGIIK_11455at 2460.352 kb on + strand, within OKGIIK_11455at 2460.352 kb on + strand, within OKGIIK_11455at 2460.352 kb on + strand, within OKGIIK_11455at 2460.352 kb on + strand, within OKGIIK_11455at 2460.352 kb on + strand, within OKGIIK_11455at 2460.352 kb on + strand, within OKGIIK_11455at 2460.352 kb on + strand, within OKGIIK_11455at 2460.352 kb on + strand, within OKGIIK_11455at 2460.352 kb on + strand, within OKGIIK_11455at 2460.352 kb on + strand, within OKGIIK_11455at 2460.353 kb on - strand, within OKGIIK_11455at 2460.353 kb on - strand, within OKGIIK_11455at 2460.353 kb on - strand, within OKGIIK_11455at 2460.353 kb on - strand, within OKGIIK_11455at 2460.353 kb on - strand, within OKGIIK_11455at 2460.536 kb on + strandat 2460.536 kb on + strandat 2460.536 kb on + strandat 2460.536 kb on + strandat 2460.537 kb on - strandat 2460.537 kb on - strandat 2460.537 kb on - strandat 2460.537 kb on - strandat 2460.537 kb on - strandat 2460.537 kb on - strandat 2460.717 kb on + strandat 2460.718 kb on - strandat 2460.718 kb on - strandat 2460.718 kb on - strandat 2460.718 kb on - strandat 2460.956 kb on + strand, within OKGIIK_11460at 2460.957 kb on - strand, within OKGIIK_11460at 2460.957 kb on - strand, within OKGIIK_11460

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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2,458,533 - ettA OKGIIK_11445 0.54 -0.7
2,458,796 + ettA OKGIIK_11445 0.70 -1.8
2,458,796 + ettA OKGIIK_11445 0.70 +0.1
2,458,796 + ettA OKGIIK_11445 0.70 -0.2
2,458,797 - ettA OKGIIK_11445 0.70 -0.5
2,458,797 - ettA OKGIIK_11445 0.70 -0.9
2,458,907 + ettA OKGIIK_11445 0.77 -0.4
2,458,907 + ettA OKGIIK_11445 0.77 -0.8
2,458,907 + ettA OKGIIK_11445 0.77 -1.7
2,458,907 + ettA OKGIIK_11445 0.77 -1.7
2,458,907 + ettA OKGIIK_11445 0.77 -1.0
2,458,908 - ettA OKGIIK_11445 0.77 -1.3
2,458,908 - ettA OKGIIK_11445 0.77 -2.4
2,459,207 + -1.1
2,459,207 + -2.0
2,459,208 - -0.4
2,459,208 - +0.5
2,459,208 - -0.7
2,459,208 - -1.6
2,459,208 - -0.1
2,459,216 + -1.9
2,459,216 + -2.4
2,459,217 - -1.8
2,459,217 - -0.5
2,459,276 + +1.2
2,459,276 + +1.1
2,459,276 + -0.7
2,459,277 - -0.7
2,459,277 - +0.4
2,459,277 - -1.8
2,459,277 - +0.3
2,459,292 - -0.4
2,459,292 - -0.7
2,459,292 - -1.0
2,459,292 - -0.7
2,459,307 + +0.8
2,459,307 + +0.9
2,459,307 + -0.1
2,459,307 + +0.9
2,459,307 + -0.8
2,459,307 + -1.0
2,459,308 - +0.1
2,459,308 - +1.1
2,459,308 - -0.7
2,460,352 + OKGIIK_11455 0.43 +0.0
2,460,352 + OKGIIK_11455 0.43 -2.0
2,460,352 + OKGIIK_11455 0.43 -1.1
2,460,352 + OKGIIK_11455 0.43 +1.1
2,460,352 + OKGIIK_11455 0.43 -0.3
2,460,352 + OKGIIK_11455 0.43 +0.3
2,460,352 + OKGIIK_11455 0.43 +1.5
2,460,352 + OKGIIK_11455 0.43 +0.0
2,460,352 + OKGIIK_11455 0.43 -0.3
2,460,352 + OKGIIK_11455 0.43 -0.8
2,460,352 + OKGIIK_11455 0.43 +0.4
2,460,352 + OKGIIK_11455 0.43 -1.3
2,460,353 - OKGIIK_11455 0.44 -0.7
2,460,353 - OKGIIK_11455 0.44 +0.4
2,460,353 - OKGIIK_11455 0.44 -0.7
2,460,353 - OKGIIK_11455 0.44 +0.0
2,460,353 - OKGIIK_11455 0.44 +0.3
2,460,536 + -1.3
2,460,536 + -2.4
2,460,536 + -0.1
2,460,536 + -0.6
2,460,537 - -0.9
2,460,537 - +0.6
2,460,537 - -2.0
2,460,537 - -1.1
2,460,537 - +1.7
2,460,537 - -0.9
2,460,717 + -1.1
2,460,718 - -2.3
2,460,718 - -1.3
2,460,718 - -0.2
2,460,718 - +1.2
2,460,956 + OKGIIK_11460 0.69 -1.3
2,460,957 - OKGIIK_11460 0.69 -1.0
2,460,957 - OKGIIK_11460 0.69 -1.7

Or see this region's nucleotide sequence