Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_10230

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntaccA and OKGIIK_10230 are separated by 319 nucleotidesOKGIIK_10230 and labA are separated by 177 nucleotideslabA and OKGIIK_10240 overlap by 4 nucleotides OKGIIK_10225: accA - acetyl-CoA carboxylase carboxyltransferase subunit alpha, at 2,206,568 to 2,207,524 accA OKGIIK_10230: OKGIIK_10230 - Bulb-type lectin domain-containing protein, at 2,207,844 to 2,208,956 _10230 OKGIIK_10235: labA - Maebl, at 2,209,134 to 2,209,868 labA OKGIIK_10240: OKGIIK_10240 - tRNA(Ile)-lysidine synthase, at 2,209,865 to 2,211,166 _10240 Position (kb) 2207 2208 2209Strain fitness (log2 ratio) -2 -1 0 1 2at 2207.504 kb on + strandat 2207.504 kb on + strandat 2207.505 kb on - strandat 2207.505 kb on - strandat 2207.513 kb on + strandat 2207.513 kb on + strandat 2207.514 kb on - strandat 2207.514 kb on - strandat 2207.514 kb on - strandat 2207.522 kb on + strandat 2207.523 kb on - strandat 2207.523 kb on - strandat 2207.543 kb on + strandat 2207.543 kb on + strandat 2207.631 kb on + strandat 2207.631 kb on + strandat 2207.631 kb on + strandat 2207.631 kb on + strandat 2207.631 kb on + strandat 2207.631 kb on + strandat 2207.632 kb on - strandat 2207.632 kb on - strandat 2207.632 kb on - strandat 2207.632 kb on - strandat 2207.643 kb on - strandat 2207.664 kb on + strandat 2207.664 kb on + strandat 2207.664 kb on + strandat 2207.664 kb on + strandat 2207.664 kb on + strandat 2207.664 kb on + strandat 2207.664 kb on + strandat 2207.665 kb on - strandat 2207.665 kb on - strandat 2207.665 kb on - strandat 2207.665 kb on - strandat 2207.665 kb on - strandat 2207.665 kb on - strandat 2207.665 kb on - strandat 2207.665 kb on - strandat 2207.678 kb on + strandat 2207.678 kb on + strandat 2207.679 kb on - strandat 2207.679 kb on - strandat 2207.726 kb on + strandat 2207.885 kb on - strandat 2207.885 kb on - strandat 2207.885 kb on - strandat 2208.205 kb on + strand, within OKGIIK_10230at 2208.205 kb on + strand, within OKGIIK_10230at 2208.206 kb on - strand, within OKGIIK_10230at 2208.206 kb on - strand, within OKGIIK_10230at 2208.206 kb on - strand, within OKGIIK_10230at 2208.206 kb on - strand, within OKGIIK_10230at 2208.206 kb on - strand, within OKGIIK_10230at 2208.243 kb on + strand, within OKGIIK_10230at 2208.243 kb on + strand, within OKGIIK_10230at 2208.243 kb on + strand, within OKGIIK_10230at 2208.287 kb on + strand, within OKGIIK_10230at 2208.287 kb on + strand, within OKGIIK_10230at 2208.287 kb on + strand, within OKGIIK_10230at 2208.288 kb on - strand, within OKGIIK_10230at 2208.288 kb on - strand, within OKGIIK_10230at 2208.411 kb on + strand, within OKGIIK_10230at 2208.411 kb on + strand, within OKGIIK_10230at 2208.412 kb on - strand, within OKGIIK_10230at 2208.690 kb on + strand, within OKGIIK_10230at 2208.690 kb on + strand, within OKGIIK_10230at 2208.690 kb on + strand, within OKGIIK_10230at 2208.690 kb on + strand, within OKGIIK_10230at 2208.690 kb on + strand, within OKGIIK_10230at 2208.690 kb on + strand, within OKGIIK_10230at 2208.690 kb on + strand, within OKGIIK_10230at 2208.691 kb on - strand, within OKGIIK_10230at 2208.691 kb on - strand, within OKGIIK_10230at 2208.691 kb on - strand, within OKGIIK_10230at 2208.691 kb on - strand, within OKGIIK_10230at 2208.691 kb on - strand, within OKGIIK_10230at 2208.691 kb on - strand, within OKGIIK_10230at 2208.691 kb on - strand, within OKGIIK_10230at 2208.691 kb on - strand, within OKGIIK_10230at 2208.764 kb on + strand, within OKGIIK_10230at 2208.765 kb on - strand, within OKGIIK_10230at 2208.765 kb on - strand, within OKGIIK_10230at 2208.885 kb on + strandat 2208.886 kb on - strandat 2208.931 kb on - strandat 2208.931 kb on - strandat 2208.931 kb on - strandat 2208.931 kb on - strandat 2208.931 kb on - strandat 2209.095 kb on + strandat 2209.113 kb on + strandat 2209.113 kb on + strandat 2209.156 kb on + strandat 2209.156 kb on + strandat 2209.221 kb on + strand, within labAat 2209.221 kb on + strand, within labAat 2209.221 kb on + strand, within labAat 2209.221 kb on + strand, within labAat 2209.221 kb on + strand, within labAat 2209.222 kb on - strand, within labAat 2209.222 kb on - strand, within labAat 2209.222 kb on - strand, within labAat 2209.248 kb on + strand, within labAat 2209.248 kb on + strand, within labAat 2209.332 kb on + strand, within labAat 2209.392 kb on + strand, within labAat 2209.392 kb on + strand, within labAat 2209.392 kb on + strand, within labAat 2209.485 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.545 kb on + strand, within labAat 2209.546 kb on - strand, within labAat 2209.546 kb on - strand, within labAat 2209.547 kb on + strand, within labAat 2209.547 kb on + strand, within labAat 2209.548 kb on - strand, within labAat 2209.752 kb on + strand, within labAat 2209.752 kb on + strand, within labAat 2209.752 kb on + strand, within labAat 2209.752 kb on + strand, within labAat 2209.752 kb on + strand, within labAat 2209.752 kb on + strand, within labAat 2209.753 kb on - strand, within labAat 2209.753 kb on - strand, within labAat 2209.753 kb on - strand, within labAat 2209.753 kb on - strand, within labAat 2209.753 kb on - strand, within labAat 2209.753 kb on - strand, within labAat 2209.753 kb on - strand, within labAat 2209.753 kb on - strand, within labAat 2209.753 kb on - strand, within labAat 2209.758 kb on + strand, within labAat 2209.768 kb on + strand, within labAat 2209.768 kb on + strand, within labAat 2209.768 kb on + strand, within labAat 2209.768 kb on + strand, within labAat 2209.768 kb on + strand, within labAat 2209.768 kb on + strand, within labAat 2209.768 kb on + strand, within labAat 2209.769 kb on - strand, within labAat 2209.769 kb on - strand, within labAat 2209.769 kb on - strand, within labAat 2209.769 kb on - strand, within labAat 2209.839 kb on + strandat 2209.839 kb on + strandat 2209.839 kb on + strandat 2209.839 kb on + strandat 2209.839 kb on + strandat 2209.839 kb on + strandat 2209.839 kb on + strandat 2209.840 kb on - strandat 2209.840 kb on - strandat 2209.840 kb on - strandat 2209.840 kb on - strandat 2209.840 kb on - strandat 2209.840 kb on - strandat 2209.840 kb on - strandat 2209.840 kb on - strandat 2209.840 kb on - strandat 2209.840 kb on - strandat 2209.840 kb on - strandat 2209.840 kb on - strandat 2209.840 kb on - strandat 2209.840 kb on - strandat 2209.840 kb on - strandat 2209.840 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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2,207,504 + -0.3
2,207,504 + -1.1
2,207,505 - -1.6
2,207,505 - -1.0
2,207,513 + -0.5
2,207,513 + -1.2
2,207,514 - -1.4
2,207,514 - +1.1
2,207,514 - -1.2
2,207,522 + -1.8
2,207,523 - -0.1
2,207,523 - -1.8
2,207,543 + +0.7
2,207,543 + -1.2
2,207,631 + -0.3
2,207,631 + -0.2
2,207,631 + +0.0
2,207,631 + +0.4
2,207,631 + +1.0
2,207,631 + -0.4
2,207,632 - +0.4
2,207,632 - +1.0
2,207,632 - -1.0
2,207,632 - +0.2
2,207,643 - +1.6
2,207,664 + -1.0
2,207,664 + +0.5
2,207,664 + +0.1
2,207,664 + -0.3
2,207,664 + -0.2
2,207,664 + +0.4
2,207,664 + -0.3
2,207,665 - -0.9
2,207,665 - +0.5
2,207,665 - +0.4
2,207,665 - -0.9
2,207,665 - -2.3
2,207,665 - +1.0
2,207,665 - +1.5
2,207,665 - +0.8
2,207,678 + -0.6
2,207,678 + +1.6
2,207,679 - -0.8
2,207,679 - -1.6
2,207,726 + -0.5
2,207,885 - +0.7
2,207,885 - -1.2
2,207,885 - -0.0
2,208,205 + OKGIIK_10230 0.32 +0.2
2,208,205 + OKGIIK_10230 0.32 +0.4
2,208,206 - OKGIIK_10230 0.33 -2.0
2,208,206 - OKGIIK_10230 0.33 +0.5
2,208,206 - OKGIIK_10230 0.33 +0.1
2,208,206 - OKGIIK_10230 0.33 +0.4
2,208,206 - OKGIIK_10230 0.33 -0.2
2,208,243 + OKGIIK_10230 0.36 +0.2
2,208,243 + OKGIIK_10230 0.36 +0.2
2,208,243 + OKGIIK_10230 0.36 -0.0
2,208,287 + OKGIIK_10230 0.40 -0.6
2,208,287 + OKGIIK_10230 0.40 +1.2
2,208,287 + OKGIIK_10230 0.40 +0.4
2,208,288 - OKGIIK_10230 0.40 +2.0
2,208,288 - OKGIIK_10230 0.40 +1.1
2,208,411 + OKGIIK_10230 0.51 -0.9
2,208,411 + OKGIIK_10230 0.51 +0.0
2,208,412 - OKGIIK_10230 0.51 -1.4
2,208,690 + OKGIIK_10230 0.76 +0.1
2,208,690 + OKGIIK_10230 0.76 -0.4
2,208,690 + OKGIIK_10230 0.76 -1.4
2,208,690 + OKGIIK_10230 0.76 +2.0
2,208,690 + OKGIIK_10230 0.76 -0.2
2,208,690 + OKGIIK_10230 0.76 +0.8
2,208,690 + OKGIIK_10230 0.76 +0.4
2,208,691 - OKGIIK_10230 0.76 -0.5
2,208,691 - OKGIIK_10230 0.76 +0.4
2,208,691 - OKGIIK_10230 0.76 +0.8
2,208,691 - OKGIIK_10230 0.76 +1.5
2,208,691 - OKGIIK_10230 0.76 -0.8
2,208,691 - OKGIIK_10230 0.76 -0.8
2,208,691 - OKGIIK_10230 0.76 +0.6
2,208,691 - OKGIIK_10230 0.76 -2.1
2,208,764 + OKGIIK_10230 0.83 -0.6
2,208,765 - OKGIIK_10230 0.83 +0.8
2,208,765 - OKGIIK_10230 0.83 +0.9
2,208,885 + -2.6
2,208,886 - +1.0
2,208,931 - +0.1
2,208,931 - -1.2
2,208,931 - -1.6
2,208,931 - -0.2
2,208,931 - +0.8
2,209,095 + -0.2
2,209,113 + +0.6
2,209,113 + -1.0
2,209,156 + +0.6
2,209,156 + -1.0
2,209,221 + labA OKGIIK_10235 0.12 -1.0
2,209,221 + labA OKGIIK_10235 0.12 -1.0
2,209,221 + labA OKGIIK_10235 0.12 +0.8
2,209,221 + labA OKGIIK_10235 0.12 -2.2
2,209,221 + labA OKGIIK_10235 0.12 +0.2
2,209,222 - labA OKGIIK_10235 0.12 +0.4
2,209,222 - labA OKGIIK_10235 0.12 -1.0
2,209,222 - labA OKGIIK_10235 0.12 -2.4
2,209,248 + labA OKGIIK_10235 0.16 +0.4
2,209,248 + labA OKGIIK_10235 0.16 +0.6
2,209,332 + labA OKGIIK_10235 0.27 -1.8
2,209,392 + labA OKGIIK_10235 0.35 -0.4
2,209,392 + labA OKGIIK_10235 0.35 -1.0
2,209,392 + labA OKGIIK_10235 0.35 -0.0
2,209,485 + labA OKGIIK_10235 0.48 -0.4
2,209,545 + labA OKGIIK_10235 0.56 +0.0
2,209,545 + labA OKGIIK_10235 0.56 +0.9
2,209,545 + labA OKGIIK_10235 0.56 +1.4
2,209,545 + labA OKGIIK_10235 0.56 -0.2
2,209,545 + labA OKGIIK_10235 0.56 -0.4
2,209,545 + labA OKGIIK_10235 0.56 -0.5
2,209,545 + labA OKGIIK_10235 0.56 -0.3
2,209,545 + labA OKGIIK_10235 0.56 +0.8
2,209,545 + labA OKGIIK_10235 0.56 +0.4
2,209,545 + labA OKGIIK_10235 0.56 -1.0
2,209,545 + labA OKGIIK_10235 0.56 +0.4
2,209,545 + labA OKGIIK_10235 0.56 +0.6
2,209,545 + labA OKGIIK_10235 0.56 +0.0
2,209,545 + labA OKGIIK_10235 0.56 -1.2
2,209,545 + labA OKGIIK_10235 0.56 +1.4
2,209,545 + labA OKGIIK_10235 0.56 -1.8
2,209,545 + labA OKGIIK_10235 0.56 -0.0
2,209,545 + labA OKGIIK_10235 0.56 +0.0
2,209,545 + labA OKGIIK_10235 0.56 -0.0
2,209,545 + labA OKGIIK_10235 0.56 -1.6
2,209,545 + labA OKGIIK_10235 0.56 +0.4
2,209,545 + labA OKGIIK_10235 0.56 -1.1
2,209,545 + labA OKGIIK_10235 0.56 +0.3
2,209,545 + labA OKGIIK_10235 0.56 +0.4
2,209,545 + labA OKGIIK_10235 0.56 +1.0
2,209,546 - labA OKGIIK_10235 0.56 -0.6
2,209,546 - labA OKGIIK_10235 0.56 -1.6
2,209,547 + labA OKGIIK_10235 0.56 -2.6
2,209,547 + labA OKGIIK_10235 0.56 +0.6
2,209,548 - labA OKGIIK_10235 0.56 -0.7
2,209,752 + labA OKGIIK_10235 0.84 -0.1
2,209,752 + labA OKGIIK_10235 0.84 -1.6
2,209,752 + labA OKGIIK_10235 0.84 +0.6
2,209,752 + labA OKGIIK_10235 0.84 -0.0
2,209,752 + labA OKGIIK_10235 0.84 -2.0
2,209,752 + labA OKGIIK_10235 0.84 +0.1
2,209,753 - labA OKGIIK_10235 0.84 +0.4
2,209,753 - labA OKGIIK_10235 0.84 +0.7
2,209,753 - labA OKGIIK_10235 0.84 -0.0
2,209,753 - labA OKGIIK_10235 0.84 -0.8
2,209,753 - labA OKGIIK_10235 0.84 +0.0
2,209,753 - labA OKGIIK_10235 0.84 +1.0
2,209,753 - labA OKGIIK_10235 0.84 -1.7
2,209,753 - labA OKGIIK_10235 0.84 -1.0
2,209,753 - labA OKGIIK_10235 0.84 -0.5
2,209,758 + labA OKGIIK_10235 0.85 -0.6
2,209,768 + labA OKGIIK_10235 0.86 +0.8
2,209,768 + labA OKGIIK_10235 0.86 +0.0
2,209,768 + labA OKGIIK_10235 0.86 +0.1
2,209,768 + labA OKGIIK_10235 0.86 -1.0
2,209,768 + labA OKGIIK_10235 0.86 -0.5
2,209,768 + labA OKGIIK_10235 0.86 -0.2
2,209,768 + labA OKGIIK_10235 0.86 -1.8
2,209,769 - labA OKGIIK_10235 0.86 +0.0
2,209,769 - labA OKGIIK_10235 0.86 -0.6
2,209,769 - labA OKGIIK_10235 0.86 -2.4
2,209,769 - labA OKGIIK_10235 0.86 -0.4
2,209,839 + -2.7
2,209,839 + -0.6
2,209,839 + +0.8
2,209,839 + +0.1
2,209,839 + -1.8
2,209,839 + +0.9
2,209,839 + -0.6
2,209,840 - -0.0
2,209,840 - -0.7
2,209,840 - -2.6
2,209,840 - +0.4
2,209,840 - +0.6
2,209,840 - -0.6
2,209,840 - -0.5
2,209,840 - +0.8
2,209,840 - -2.1
2,209,840 - -1.6
2,209,840 - +2.0
2,209,840 - -0.7
2,209,840 - -1.5
2,209,840 - -0.3
2,209,840 - +0.7
2,209,840 - -0.4

Or see this region's nucleotide sequence