Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_08460 and OKGIIK_08465 are separated by 97 nucleotides OKGIIK_08465 and sdhE overlap by 29 nucleotides sdhE and sdhB,frdB are separated by 206 nucleotides sdhB,frdB and sdhA are separated by 99 nucleotides
OKGIIK_08460: OKGIIK_08460 - lipoprotein-releasing ABC transporter permease subunit, at 1,855,008 to 1,856,249
_08460
OKGIIK_08465: OKGIIK_08465 - Membrane-bound toxin component of toxin-antitoxin system, at 1,856,347 to 1,856,787
_08465
OKGIIK_08470: sdhE - Succinate dehydrogenase flavin-adding protein, antitoxin component of the CptAB toxin-antitoxin module, at 1,856,759 to 1,857,007
sdhE
OKGIIK_08475: sdhB,frdB - succinate dehydrogenase iron-sulfur subunit, at 1,857,214 to 1,857,996
sdhB,frdB
OKGIIK_08480: sdhA - succinate dehydrogenase flavoprotein subunit, at 1,858,096 to 1,859,883
sdhA
Position (kb)
1857
1858 Strain fitness (log2 ratio)
-2
-1
0
1 at 1856.298 kb on - strand at 1856.299 kb on - strand at 1856.299 kb on - strand at 1856.306 kb on - strand at 1856.306 kb on - strand at 1856.306 kb on - strand at 1856.306 kb on - strand at 1856.306 kb on - strand at 1856.306 kb on - strand at 1856.501 kb on + strand, within OKGIIK_08465 at 1856.501 kb on + strand, within OKGIIK_08465 at 1856.501 kb on + strand, within OKGIIK_08465 at 1856.501 kb on + strand, within OKGIIK_08465 at 1856.502 kb on - strand, within OKGIIK_08465 at 1856.502 kb on - strand, within OKGIIK_08465 at 1856.502 kb on - strand, within OKGIIK_08465 at 1856.502 kb on - strand, within OKGIIK_08465 at 1856.502 kb on - strand, within OKGIIK_08465 at 1856.502 kb on - strand, within OKGIIK_08465 at 1856.502 kb on - strand, within OKGIIK_08465 at 1856.502 kb on - strand, within OKGIIK_08465 at 1856.530 kb on + strand, within OKGIIK_08465 at 1856.531 kb on - strand, within OKGIIK_08465 at 1856.531 kb on - strand, within OKGIIK_08465 at 1857.007 kb on + strand at 1857.007 kb on + strand at 1857.007 kb on + strand at 1857.008 kb on - strand at 1857.008 kb on - strand at 1857.008 kb on - strand at 1857.008 kb on - strand at 1857.008 kb on - strand at 1857.090 kb on + strand at 1857.090 kb on + strand at 1857.090 kb on + strand at 1857.090 kb on + strand at 1857.090 kb on + strand at 1857.090 kb on + strand at 1857.090 kb on + strand at 1857.090 kb on + strand at 1857.090 kb on + strand at 1857.090 kb on + strand at 1857.091 kb on - strand at 1857.091 kb on - strand at 1857.091 kb on - strand at 1857.091 kb on - strand at 1857.091 kb on - strand at 1857.117 kb on + strand at 1857.117 kb on + strand at 1857.117 kb on + strand at 1857.215 kb on + strand at 1858.003 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 1,856,298 - +0.9 1,856,299 - +0.7 1,856,299 - +0.4 1,856,306 - -0.9 1,856,306 - +1.7 1,856,306 - +1.5 1,856,306 - -1.2 1,856,306 - +0.2 1,856,306 - +0.1 1,856,501 + OKGIIK_08465 0.35 +1.0 1,856,501 + OKGIIK_08465 0.35 +0.1 1,856,501 + OKGIIK_08465 0.35 -0.2 1,856,501 + OKGIIK_08465 0.35 +0.7 1,856,502 - OKGIIK_08465 0.35 +1.0 1,856,502 - OKGIIK_08465 0.35 +0.5 1,856,502 - OKGIIK_08465 0.35 +1.4 1,856,502 - OKGIIK_08465 0.35 -0.4 1,856,502 - OKGIIK_08465 0.35 -0.5 1,856,502 - OKGIIK_08465 0.35 -1.6 1,856,502 - OKGIIK_08465 0.35 -1.3 1,856,502 - OKGIIK_08465 0.35 +0.0 1,856,530 + OKGIIK_08465 0.41 -2.4 1,856,531 - OKGIIK_08465 0.42 -0.6 1,856,531 - OKGIIK_08465 0.42 -0.0 1,857,007 + +0.2 1,857,007 + +0.0 1,857,007 + -1.2 1,857,008 - -0.5 1,857,008 - +0.0 1,857,008 - +0.8 1,857,008 - -1.2 1,857,008 - -0.3 1,857,090 + +0.3 1,857,090 + +0.1 1,857,090 + +0.2 1,857,090 + -1.2 1,857,090 + +0.1 1,857,090 + -0.4 1,857,090 + -0.9 1,857,090 + +0.4 1,857,090 + -0.5 1,857,090 + -0.1 1,857,091 - +0.2 1,857,091 - -0.8 1,857,091 - +0.2 1,857,091 - -0.3 1,857,091 - -0.9 1,857,117 + -1.1 1,857,117 + +0.1 1,857,117 + -1.2 1,857,215 + +0.6 1,858,003 - -0.1
Or see this region's nucleotide sequence