Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_03510

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyhiN and mmsB are separated by 84 nucleotidesmmsB and yHI9 are separated by 112 nucleotides OKGIIK_03505: yhiN - NAD(P)/FAD-dependent oxidoreductase, at 778,452 to 779,630 yhiN OKGIIK_03510: mmsB - 3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase, at 779,715 to 780,599 mmsB OKGIIK_03515: yHI9 - PhzF family phenazine biosynthesis protein, at 780,712 to 781,590 yHI9 Position (kb) 779 780 781Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 778.725 kb on + strand, within yhiNat 778.726 kb on - strand, within yhiNat 779.058 kb on + strand, within yhiNat 779.059 kb on - strand, within yhiNat 779.059 kb on - strand, within yhiNat 779.184 kb on + strand, within yhiNat 779.185 kb on - strand, within yhiNat 779.532 kb on + strandat 779.532 kb on + strandat 779.532 kb on + strandat 779.532 kb on + strandat 779.532 kb on + strandat 779.532 kb on + strandat 779.532 kb on + strandat 779.533 kb on - strandat 779.533 kb on - strandat 779.533 kb on - strandat 779.533 kb on - strandat 779.533 kb on - strandat 779.533 kb on - strandat 779.577 kb on + strandat 779.577 kb on + strandat 779.578 kb on - strandat 779.578 kb on - strandat 779.668 kb on - strandat 780.052 kb on - strand, within mmsBat 780.052 kb on - strand, within mmsBat 780.052 kb on - strand, within mmsBat 780.052 kb on - strand, within mmsBat 780.052 kb on - strand, within mmsBat 780.068 kb on - strand, within mmsBat 780.107 kb on + strand, within mmsBat 780.108 kb on - strand, within mmsBat 780.214 kb on + strand, within mmsBat 780.214 kb on + strand, within mmsBat 780.214 kb on + strand, within mmsBat 780.215 kb on - strand, within mmsBat 780.291 kb on + strand, within mmsBat 780.292 kb on - strand, within mmsBat 780.354 kb on + strand, within mmsBat 780.627 kb on - strandat 780.627 kb on - strandat 780.627 kb on - strandat 780.695 kb on + strandat 780.713 kb on + strandat 780.839 kb on + strand, within yHI9at 780.839 kb on + strand, within yHI9at 780.839 kb on + strand, within yHI9at 780.839 kb on + strand, within yHI9at 780.839 kb on + strand, within yHI9at 780.839 kb on + strand, within yHI9at 780.840 kb on - strand, within yHI9at 780.840 kb on - strand, within yHI9at 780.840 kb on - strand, within yHI9at 780.881 kb on + strand, within yHI9at 780.881 kb on + strand, within yHI9at 780.881 kb on + strand, within yHI9at 780.881 kb on + strand, within yHI9at 780.882 kb on - strand, within yHI9at 780.882 kb on - strand, within yHI9at 780.882 kb on - strand, within yHI9at 780.882 kb on - strand, within yHI9at 780.882 kb on - strand, within yHI9at 780.882 kb on - strand, within yHI9at 780.882 kb on - strand, within yHI9at 780.882 kb on - strand, within yHI9at 780.968 kb on + strand, within yHI9at 780.969 kb on - strand, within yHI9at 780.969 kb on - strand, within yHI9at 780.969 kb on - strand, within yHI9at 781.202 kb on - strand, within yHI9at 781.202 kb on - strand, within yHI9at 781.410 kb on - strand, within yHI9at 781.410 kb on - strand, within yHI9at 781.574 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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778,725 + yhiN OKGIIK_03505 0.23 +0.9
778,726 - yhiN OKGIIK_03505 0.23 -1.0
779,058 + yhiN OKGIIK_03505 0.51 +1.4
779,059 - yhiN OKGIIK_03505 0.51 +0.6
779,059 - yhiN OKGIIK_03505 0.51 -0.6
779,184 + yhiN OKGIIK_03505 0.62 +0.1
779,185 - yhiN OKGIIK_03505 0.62 +0.2
779,532 + -0.4
779,532 + +0.6
779,532 + -0.6
779,532 + +0.5
779,532 + -2.3
779,532 + +0.8
779,532 + -1.2
779,533 - -0.6
779,533 - +0.3
779,533 - +1.0
779,533 - -0.1
779,533 - -0.9
779,533 - -4.1
779,577 + -2.4
779,577 + -0.5
779,578 - -1.2
779,578 - -0.6
779,668 - +0.4
780,052 - mmsB OKGIIK_03510 0.38 -1.8
780,052 - mmsB OKGIIK_03510 0.38 +1.4
780,052 - mmsB OKGIIK_03510 0.38 +0.1
780,052 - mmsB OKGIIK_03510 0.38 -0.8
780,052 - mmsB OKGIIK_03510 0.38 -0.1
780,068 - mmsB OKGIIK_03510 0.40 -1.0
780,107 + mmsB OKGIIK_03510 0.44 +0.2
780,108 - mmsB OKGIIK_03510 0.44 -1.8
780,214 + mmsB OKGIIK_03510 0.56 -0.9
780,214 + mmsB OKGIIK_03510 0.56 +0.6
780,214 + mmsB OKGIIK_03510 0.56 -1.6
780,215 - mmsB OKGIIK_03510 0.56 -1.2
780,291 + mmsB OKGIIK_03510 0.65 +0.3
780,292 - mmsB OKGIIK_03510 0.65 +2.4
780,354 + mmsB OKGIIK_03510 0.72 +0.4
780,627 - -0.6
780,627 - -0.5
780,627 - +0.4
780,695 + -0.0
780,713 + +0.0
780,839 + yHI9 OKGIIK_03515 0.14 -0.1
780,839 + yHI9 OKGIIK_03515 0.14 +0.4
780,839 + yHI9 OKGIIK_03515 0.14 -0.5
780,839 + yHI9 OKGIIK_03515 0.14 +0.4
780,839 + yHI9 OKGIIK_03515 0.14 +0.5
780,839 + yHI9 OKGIIK_03515 0.14 -0.1
780,840 - yHI9 OKGIIK_03515 0.15 +1.2
780,840 - yHI9 OKGIIK_03515 0.15 +0.2
780,840 - yHI9 OKGIIK_03515 0.15 +0.1
780,881 + yHI9 OKGIIK_03515 0.19 -2.6
780,881 + yHI9 OKGIIK_03515 0.19 +0.5
780,881 + yHI9 OKGIIK_03515 0.19 +0.9
780,881 + yHI9 OKGIIK_03515 0.19 +1.7
780,882 - yHI9 OKGIIK_03515 0.19 -1.2
780,882 - yHI9 OKGIIK_03515 0.19 -1.0
780,882 - yHI9 OKGIIK_03515 0.19 +0.4
780,882 - yHI9 OKGIIK_03515 0.19 +0.0
780,882 - yHI9 OKGIIK_03515 0.19 -0.6
780,882 - yHI9 OKGIIK_03515 0.19 +0.4
780,882 - yHI9 OKGIIK_03515 0.19 +0.8
780,882 - yHI9 OKGIIK_03515 0.19 -1.0
780,968 + yHI9 OKGIIK_03515 0.29 +0.6
780,969 - yHI9 OKGIIK_03515 0.29 +0.0
780,969 - yHI9 OKGIIK_03515 0.29 +2.2
780,969 - yHI9 OKGIIK_03515 0.29 +0.3
781,202 - yHI9 OKGIIK_03515 0.56 +0.4
781,202 - yHI9 OKGIIK_03515 0.56 -2.3
781,410 - yHI9 OKGIIK_03515 0.79 +0.2
781,410 - yHI9 OKGIIK_03515 0.79 -0.3
781,574 + -0.5

Or see this region's nucleotide sequence