Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_03135

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdapD and OKGIIK_03125 are separated by 27 nucleotidesOKGIIK_03125 and OKGIIK_03130 overlap by 4 nucleotidesOKGIIK_03130 and dapE are separated by 10 nucleotidesdapE and OKGIIK_03140 are separated by 29 nucleotidesOKGIIK_03140 and OKGIIK_03145 are separated by 15 nucleotidesOKGIIK_03145 and nosY are separated by 10 nucleotides OKGIIK_03120: dapD - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 707,805 to 708,632 dapD OKGIIK_03125: OKGIIK_03125 - hypothetical protein, at 708,660 to 709,127 _03125 OKGIIK_03130: OKGIIK_03130 - Arsenate reductase, at 709,124 to 709,480 _03130 OKGIIK_03135: dapE - succinyl-diaminopimelate desuccinylase, at 709,491 to 710,693 dapE OKGIIK_03140: OKGIIK_03140 - Sec-independent protein translocase protein TatA, at 710,723 to 710,926 _03140 OKGIIK_03145: OKGIIK_03145 - Nitrous oxide reductase, at 710,942 to 711,601 _03145 OKGIIK_03150: nosY - ABC transporter permease, at 711,612 to 712,445 nosY Position (kb) 709 710 711Strain fitness (log2 ratio) -2 -1 0 1 2at 708.664 kb on - strandat 708.675 kb on + strandat 708.703 kb on + strandat 708.703 kb on + strandat 708.703 kb on + strandat 708.703 kb on + strandat 708.703 kb on + strandat 708.703 kb on + strandat 708.704 kb on - strandat 708.704 kb on - strandat 708.841 kb on + strand, within OKGIIK_03125at 708.841 kb on + strand, within OKGIIK_03125at 708.841 kb on + strand, within OKGIIK_03125at 708.842 kb on - strand, within OKGIIK_03125at 708.842 kb on - strand, within OKGIIK_03125at 708.879 kb on + strand, within OKGIIK_03125at 708.879 kb on + strand, within OKGIIK_03125at 708.879 kb on + strand, within OKGIIK_03125at 708.879 kb on + strand, within OKGIIK_03125at 708.879 kb on + strand, within OKGIIK_03125at 708.879 kb on + strand, within OKGIIK_03125at 708.879 kb on + strand, within OKGIIK_03125at 708.879 kb on + strand, within OKGIIK_03125at 708.879 kb on + strand, within OKGIIK_03125at 708.879 kb on + strand, within OKGIIK_03125at 708.879 kb on + strand, within OKGIIK_03125at 708.880 kb on - strand, within OKGIIK_03125at 709.024 kb on + strand, within OKGIIK_03125at 709.024 kb on + strand, within OKGIIK_03125at 709.024 kb on + strand, within OKGIIK_03125at 709.202 kb on + strand, within OKGIIK_03130at 709.202 kb on + strand, within OKGIIK_03130at 709.202 kb on + strand, within OKGIIK_03130at 709.202 kb on + strand, within OKGIIK_03130at 709.202 kb on + strand, within OKGIIK_03130at 709.202 kb on + strand, within OKGIIK_03130at 709.202 kb on + strand, within OKGIIK_03130at 709.203 kb on - strand, within OKGIIK_03130at 709.203 kb on - strand, within OKGIIK_03130at 709.203 kb on - strand, within OKGIIK_03130at 709.203 kb on - strand, within OKGIIK_03130at 709.203 kb on - strand, within OKGIIK_03130at 709.203 kb on - strand, within OKGIIK_03130at 710.788 kb on + strand, within OKGIIK_03140at 710.788 kb on + strand, within OKGIIK_03140at 710.788 kb on + strand, within OKGIIK_03140at 710.788 kb on + strand, within OKGIIK_03140at 710.788 kb on + strand, within OKGIIK_03140at 710.789 kb on - strand, within OKGIIK_03140at 710.789 kb on - strand, within OKGIIK_03140at 711.088 kb on - strand, within OKGIIK_03145at 711.088 kb on - strand, within OKGIIK_03145at 711.237 kb on + strand, within OKGIIK_03145at 711.238 kb on - strand, within OKGIIK_03145at 711.238 kb on - strand, within OKGIIK_03145at 711.318 kb on + strand, within OKGIIK_03145at 711.318 kb on + strand, within OKGIIK_03145at 711.318 kb on + strand, within OKGIIK_03145at 711.318 kb on + strand, within OKGIIK_03145at 711.318 kb on + strand, within OKGIIK_03145at 711.318 kb on + strand, within OKGIIK_03145at 711.318 kb on + strand, within OKGIIK_03145at 711.318 kb on + strand, within OKGIIK_03145at 711.318 kb on + strand, within OKGIIK_03145at 711.318 kb on + strand, within OKGIIK_03145at 711.319 kb on - strand, within OKGIIK_03145at 711.319 kb on - strand, within OKGIIK_03145at 711.319 kb on - strand, within OKGIIK_03145at 711.319 kb on - strand, within OKGIIK_03145at 711.319 kb on - strand, within OKGIIK_03145at 711.319 kb on - strand, within OKGIIK_03145at 711.319 kb on - strand, within OKGIIK_03145at 711.319 kb on - strand, within OKGIIK_03145at 711.319 kb on - strand, within OKGIIK_03145at 711.319 kb on - strand, within OKGIIK_03145at 711.360 kb on + strand, within OKGIIK_03145at 711.360 kb on + strand, within OKGIIK_03145at 711.360 kb on + strand, within OKGIIK_03145at 711.360 kb on + strand, within OKGIIK_03145at 711.361 kb on - strand, within OKGIIK_03145at 711.361 kb on - strand, within OKGIIK_03145at 711.361 kb on - strand, within OKGIIK_03145at 711.361 kb on - strand, within OKGIIK_03145at 711.361 kb on - strand, within OKGIIK_03145at 711.361 kb on - strand, within OKGIIK_03145at 711.361 kb on - strand, within OKGIIK_03145at 711.361 kb on - strand, within OKGIIK_03145at 711.361 kb on - strand, within OKGIIK_03145at 711.453 kb on + strand, within OKGIIK_03145at 711.453 kb on + strand, within OKGIIK_03145at 711.453 kb on + strand, within OKGIIK_03145at 711.453 kb on + strand, within OKGIIK_03145at 711.453 kb on + strand, within OKGIIK_03145at 711.453 kb on + strand, within OKGIIK_03145at 711.453 kb on + strand, within OKGIIK_03145at 711.453 kb on + strand, within OKGIIK_03145at 711.453 kb on + strand, within OKGIIK_03145at 711.453 kb on + strand, within OKGIIK_03145at 711.453 kb on + strand, within OKGIIK_03145at 711.453 kb on + strand, within OKGIIK_03145at 711.453 kb on + strand, within OKGIIK_03145at 711.453 kb on + strand, within OKGIIK_03145at 711.454 kb on - strand, within OKGIIK_03145at 711.454 kb on - strand, within OKGIIK_03145at 711.454 kb on - strand, within OKGIIK_03145at 711.454 kb on - strand, within OKGIIK_03145at 711.454 kb on - strand, within OKGIIK_03145at 711.454 kb on - strand, within OKGIIK_03145at 711.454 kb on - strand, within OKGIIK_03145at 711.454 kb on - strand, within OKGIIK_03145at 711.454 kb on - strand, within OKGIIK_03145at 711.454 kb on - strand, within OKGIIK_03145at 711.454 kb on - strand, within OKGIIK_03145at 711.454 kb on - strand, within OKGIIK_03145at 711.454 kb on - strand, within OKGIIK_03145at 711.454 kb on - strand, within OKGIIK_03145at 711.454 kb on - strand, within OKGIIK_03145at 711.454 kb on - strand, within OKGIIK_03145

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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708,664 - +1.3
708,675 + -0.2
708,703 + -0.7
708,703 + -1.7
708,703 + -2.5
708,703 + -1.7
708,703 + -1.6
708,703 + -2.7
708,704 - -0.2
708,704 - +0.5
708,841 + OKGIIK_03125 0.39 -0.7
708,841 + OKGIIK_03125 0.39 +0.5
708,841 + OKGIIK_03125 0.39 +0.3
708,842 - OKGIIK_03125 0.39 +0.5
708,842 - OKGIIK_03125 0.39 -0.1
708,879 + OKGIIK_03125 0.47 +0.0
708,879 + OKGIIK_03125 0.47 +1.4
708,879 + OKGIIK_03125 0.47 -1.4
708,879 + OKGIIK_03125 0.47 +1.9
708,879 + OKGIIK_03125 0.47 +0.3
708,879 + OKGIIK_03125 0.47 +1.3
708,879 + OKGIIK_03125 0.47 +1.7
708,879 + OKGIIK_03125 0.47 -0.1
708,879 + OKGIIK_03125 0.47 +1.1
708,879 + OKGIIK_03125 0.47 -1.8
708,879 + OKGIIK_03125 0.47 -0.9
708,880 - OKGIIK_03125 0.47 +0.3
709,024 + OKGIIK_03125 0.78 -0.3
709,024 + OKGIIK_03125 0.78 -1.0
709,024 + OKGIIK_03125 0.78 -0.6
709,202 + OKGIIK_03130 0.22 +0.0
709,202 + OKGIIK_03130 0.22 -0.1
709,202 + OKGIIK_03130 0.22 -0.5
709,202 + OKGIIK_03130 0.22 +0.1
709,202 + OKGIIK_03130 0.22 -1.1
709,202 + OKGIIK_03130 0.22 -0.8
709,202 + OKGIIK_03130 0.22 -0.7
709,203 - OKGIIK_03130 0.22 -1.0
709,203 - OKGIIK_03130 0.22 +0.1
709,203 - OKGIIK_03130 0.22 +0.3
709,203 - OKGIIK_03130 0.22 -2.1
709,203 - OKGIIK_03130 0.22 -1.8
709,203 - OKGIIK_03130 0.22 -1.0
710,788 + OKGIIK_03140 0.32 -0.2
710,788 + OKGIIK_03140 0.32 -0.4
710,788 + OKGIIK_03140 0.32 +0.3
710,788 + OKGIIK_03140 0.32 -0.9
710,788 + OKGIIK_03140 0.32 -1.0
710,789 - OKGIIK_03140 0.32 +0.5
710,789 - OKGIIK_03140 0.32 +0.7
711,088 - OKGIIK_03145 0.22 -0.5
711,088 - OKGIIK_03145 0.22 +0.2
711,237 + OKGIIK_03145 0.45 +0.8
711,238 - OKGIIK_03145 0.45 -1.5
711,238 - OKGIIK_03145 0.45 -0.5
711,318 + OKGIIK_03145 0.57 -0.2
711,318 + OKGIIK_03145 0.57 -0.7
711,318 + OKGIIK_03145 0.57 -0.6
711,318 + OKGIIK_03145 0.57 +0.2
711,318 + OKGIIK_03145 0.57 -0.2
711,318 + OKGIIK_03145 0.57 -1.8
711,318 + OKGIIK_03145 0.57 -1.7
711,318 + OKGIIK_03145 0.57 -0.4
711,318 + OKGIIK_03145 0.57 +0.9
711,318 + OKGIIK_03145 0.57 +0.8
711,319 - OKGIIK_03145 0.57 -0.7
711,319 - OKGIIK_03145 0.57 -1.5
711,319 - OKGIIK_03145 0.57 -0.0
711,319 - OKGIIK_03145 0.57 +0.8
711,319 - OKGIIK_03145 0.57 +0.2
711,319 - OKGIIK_03145 0.57 -1.4
711,319 - OKGIIK_03145 0.57 -2.6
711,319 - OKGIIK_03145 0.57 -1.3
711,319 - OKGIIK_03145 0.57 +1.5
711,319 - OKGIIK_03145 0.57 -1.7
711,360 + OKGIIK_03145 0.63 -0.4
711,360 + OKGIIK_03145 0.63 +0.0
711,360 + OKGIIK_03145 0.63 -0.5
711,360 + OKGIIK_03145 0.63 +0.7
711,361 - OKGIIK_03145 0.63 +0.5
711,361 - OKGIIK_03145 0.63 -0.6
711,361 - OKGIIK_03145 0.63 -1.2
711,361 - OKGIIK_03145 0.63 -0.4
711,361 - OKGIIK_03145 0.63 +0.3
711,361 - OKGIIK_03145 0.63 -2.2
711,361 - OKGIIK_03145 0.63 +0.6
711,361 - OKGIIK_03145 0.63 +2.2
711,361 - OKGIIK_03145 0.63 +0.8
711,453 + OKGIIK_03145 0.77 -0.2
711,453 + OKGIIK_03145 0.77 -2.4
711,453 + OKGIIK_03145 0.77 +0.9
711,453 + OKGIIK_03145 0.77 +0.8
711,453 + OKGIIK_03145 0.77 +1.0
711,453 + OKGIIK_03145 0.77 +0.2
711,453 + OKGIIK_03145 0.77 -0.8
711,453 + OKGIIK_03145 0.77 -1.0
711,453 + OKGIIK_03145 0.77 -2.1
711,453 + OKGIIK_03145 0.77 +0.9
711,453 + OKGIIK_03145 0.77 +0.3
711,453 + OKGIIK_03145 0.77 -0.7
711,453 + OKGIIK_03145 0.77 -1.5
711,453 + OKGIIK_03145 0.77 +0.3
711,454 - OKGIIK_03145 0.78 -2.5
711,454 - OKGIIK_03145 0.78 +0.2
711,454 - OKGIIK_03145 0.78 +1.0
711,454 - OKGIIK_03145 0.78 -1.8
711,454 - OKGIIK_03145 0.78 -0.2
711,454 - OKGIIK_03145 0.78 -0.2
711,454 - OKGIIK_03145 0.78 +1.7
711,454 - OKGIIK_03145 0.78 -2.1
711,454 - OKGIIK_03145 0.78 -1.7
711,454 - OKGIIK_03145 0.78 +0.8
711,454 - OKGIIK_03145 0.78 -0.4
711,454 - OKGIIK_03145 0.78 -1.8
711,454 - OKGIIK_03145 0.78 +0.9
711,454 - OKGIIK_03145 0.78 +0.5
711,454 - OKGIIK_03145 0.78 +2.1
711,454 - OKGIIK_03145 0.78 -0.7

Or see this region's nucleotide sequence