Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_01620

Experiment: no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOKGIIK_01610 and OKGIIK_01615 are separated by 165 nucleotidesOKGIIK_01615 and OKGIIK_01620 are separated by 84 nucleotidesOKGIIK_01620 and OKGIIK_01625 are separated by 160 nucleotides OKGIIK_01610: OKGIIK_01610 - Sulfurtransferase, at 365,173 to 366,153 _01610 OKGIIK_01615: OKGIIK_01615 - Single-stranded DNA-binding protein, at 366,319 to 366,819 _01615 OKGIIK_01620: OKGIIK_01620 - AraC family transcriptional regulator, at 366,904 to 367,614 _01620 OKGIIK_01625: OKGIIK_01625 - Hydroxyproline-2-epimerase, at 367,775 to 368,716 _01625 Position (kb) 366 367 368Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 365.971 kb on + strand, within OKGIIK_01610at 365.971 kb on + strand, within OKGIIK_01610at 365.971 kb on + strand, within OKGIIK_01610at 365.972 kb on - strand, within OKGIIK_01610at 365.972 kb on - strand, within OKGIIK_01610at 366.196 kb on + strandat 366.196 kb on + strandat 366.197 kb on - strandat 366.243 kb on + strandat 366.243 kb on + strandat 366.243 kb on + strandat 366.243 kb on + strandat 366.243 kb on + strandat 366.244 kb on - strandat 366.244 kb on - strandat 366.244 kb on - strandat 366.248 kb on + strandat 366.905 kb on + strandat 366.905 kb on + strandat 366.905 kb on + strandat 366.905 kb on + strandat 366.905 kb on + strandat 366.905 kb on + strandat 366.905 kb on + strandat 366.905 kb on + strandat 366.905 kb on + strandat 366.905 kb on + strandat 366.905 kb on + strandat 366.905 kb on + strandat 367.185 kb on - strand, within OKGIIK_01620at 367.185 kb on - strand, within OKGIIK_01620at 367.199 kb on + strand, within OKGIIK_01620at 367.199 kb on + strand, within OKGIIK_01620at 367.199 kb on + strand, within OKGIIK_01620at 367.199 kb on + strand, within OKGIIK_01620at 367.199 kb on + strand, within OKGIIK_01620at 367.199 kb on + strand, within OKGIIK_01620at 367.199 kb on + strand, within OKGIIK_01620at 367.199 kb on + strand, within OKGIIK_01620at 367.199 kb on + strand, within OKGIIK_01620at 367.199 kb on + strand, within OKGIIK_01620at 367.199 kb on + strand, within OKGIIK_01620at 367.199 kb on + strand, within OKGIIK_01620at 367.199 kb on + strand, within OKGIIK_01620at 367.200 kb on - strand, within OKGIIK_01620at 367.200 kb on - strand, within OKGIIK_01620at 367.200 kb on - strand, within OKGIIK_01620at 367.200 kb on - strand, within OKGIIK_01620at 367.200 kb on - strand, within OKGIIK_01620at 367.200 kb on - strand, within OKGIIK_01620at 367.200 kb on - strand, within OKGIIK_01620at 367.200 kb on - strand, within OKGIIK_01620at 367.200 kb on - strand, within OKGIIK_01620at 367.200 kb on - strand, within OKGIIK_01620at 367.200 kb on - strand, within OKGIIK_01620at 367.200 kb on - strand, within OKGIIK_01620at 367.200 kb on - strand, within OKGIIK_01620at 367.200 kb on - strand, within OKGIIK_01620at 367.200 kb on - strand, within OKGIIK_01620at 367.200 kb on - strand, within OKGIIK_01620at 367.200 kb on - strand, within OKGIIK_01620at 367.200 kb on - strand, within OKGIIK_01620at 367.350 kb on - strand, within OKGIIK_01620at 367.415 kb on + strand, within OKGIIK_01620at 367.415 kb on + strand, within OKGIIK_01620at 367.415 kb on + strand, within OKGIIK_01620at 367.415 kb on + strand, within OKGIIK_01620at 367.415 kb on + strand, within OKGIIK_01620at 367.415 kb on + strand, within OKGIIK_01620at 367.415 kb on + strand, within OKGIIK_01620at 367.415 kb on + strand, within OKGIIK_01620at 367.415 kb on + strand, within OKGIIK_01620at 367.415 kb on + strand, within OKGIIK_01620at 367.415 kb on + strand, within OKGIIK_01620at 367.415 kb on + strand, within OKGIIK_01620at 367.415 kb on + strand, within OKGIIK_01620at 367.415 kb on + strand, within OKGIIK_01620at 367.415 kb on + strand, within OKGIIK_01620at 367.415 kb on + strand, within OKGIIK_01620at 367.415 kb on + strand, within OKGIIK_01620at 367.415 kb on + strand, within OKGIIK_01620at 367.415 kb on + strand, within OKGIIK_01620at 367.415 kb on + strand, within OKGIIK_01620at 367.415 kb on + strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.416 kb on - strand, within OKGIIK_01620at 367.523 kb on + strand, within OKGIIK_01620at 367.523 kb on + strand, within OKGIIK_01620at 367.523 kb on + strand, within OKGIIK_01620at 367.523 kb on + strand, within OKGIIK_01620at 367.523 kb on + strand, within OKGIIK_01620at 367.524 kb on - strand, within OKGIIK_01620at 367.667 kb on + strandat 367.668 kb on - strandat 367.740 kb on - strandat 367.780 kb on + strandat 367.780 kb on + strandat 367.780 kb on + strandat 367.780 kb on + strandat 367.780 kb on + strandat 367.780 kb on + strandat 367.780 kb on + strandat 367.781 kb on - strandat 367.781 kb on - strandat 367.781 kb on - strandat 367.781 kb on - strandat 367.781 kb on - strandat 367.781 kb on - strandat 367.781 kb on - strandat 367.781 kb on - strandat 368.025 kb on - strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.105 kb on + strand, within OKGIIK_01625at 368.106 kb on - strand, within OKGIIK_01625at 368.106 kb on - strand, within OKGIIK_01625at 368.106 kb on - strand, within OKGIIK_01625at 368.106 kb on - strand, within OKGIIK_01625at 368.106 kb on - strand, within OKGIIK_01625at 368.106 kb on - strand, within OKGIIK_01625at 368.106 kb on - strand, within OKGIIK_01625at 368.106 kb on - strand, within OKGIIK_01625at 368.106 kb on - strand, within OKGIIK_01625at 368.106 kb on - strand, within OKGIIK_01625at 368.106 kb on - strand, within OKGIIK_01625at 368.183 kb on + strand, within OKGIIK_01625at 368.184 kb on - strand, within OKGIIK_01625at 368.184 kb on - strand, within OKGIIK_01625at 368.184 kb on - strand, within OKGIIK_01625at 368.184 kb on - strand, within OKGIIK_01625at 368.327 kb on + strand, within OKGIIK_01625at 368.327 kb on + strand, within OKGIIK_01625at 368.327 kb on + strand, within OKGIIK_01625at 368.327 kb on + strand, within OKGIIK_01625at 368.328 kb on - strand, within OKGIIK_01625at 368.328 kb on - strand, within OKGIIK_01625at 368.328 kb on - strand, within OKGIIK_01625at 368.328 kb on - strand, within OKGIIK_01625at 368.328 kb on - strand, within OKGIIK_01625at 368.328 kb on - strand, within OKGIIK_01625at 368.329 kb on + strand, within OKGIIK_01625at 368.329 kb on + strand, within OKGIIK_01625at 368.330 kb on - strand, within OKGIIK_01625at 368.330 kb on - strand, within OKGIIK_01625at 368.472 kb on - strand, within OKGIIK_01625at 368.472 kb on - strand, within OKGIIK_01625at 368.597 kb on + strand, within OKGIIK_01625at 368.598 kb on - strand, within OKGIIK_01625at 368.598 kb on - strand, within OKGIIK_01625at 368.598 kb on - strand, within OKGIIK_01625

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
remove
365,971 + OKGIIK_01610 0.81 -1.3
365,971 + OKGIIK_01610 0.81 +0.5
365,971 + OKGIIK_01610 0.81 -1.9
365,972 - OKGIIK_01610 0.81 +1.3
365,972 - OKGIIK_01610 0.81 +0.2
366,196 + -0.6
366,196 + -1.9
366,197 - -1.0
366,243 + -1.1
366,243 + -0.8
366,243 + +0.7
366,243 + +1.6
366,243 + -1.5
366,244 - +0.6
366,244 - -0.7
366,244 - +0.5
366,248 + +0.2
366,905 + -1.6
366,905 + -0.4
366,905 + -1.1
366,905 + +1.3
366,905 + -1.2
366,905 + +1.5
366,905 + +0.7
366,905 + +1.0
366,905 + +1.5
366,905 + +0.3
366,905 + +2.1
366,905 + +0.3
367,185 - OKGIIK_01620 0.40 -0.1
367,185 - OKGIIK_01620 0.40 +0.4
367,199 + OKGIIK_01620 0.41 -1.0
367,199 + OKGIIK_01620 0.41 +1.3
367,199 + OKGIIK_01620 0.41 -1.0
367,199 + OKGIIK_01620 0.41 +0.5
367,199 + OKGIIK_01620 0.41 +0.5
367,199 + OKGIIK_01620 0.41 -0.2
367,199 + OKGIIK_01620 0.41 -2.7
367,199 + OKGIIK_01620 0.41 +0.5
367,199 + OKGIIK_01620 0.41 +0.7
367,199 + OKGIIK_01620 0.41 -0.1
367,199 + OKGIIK_01620 0.41 +0.2
367,199 + OKGIIK_01620 0.41 +0.2
367,199 + OKGIIK_01620 0.41 +1.5
367,200 - OKGIIK_01620 0.42 -0.6
367,200 - OKGIIK_01620 0.42 +0.1
367,200 - OKGIIK_01620 0.42 -0.3
367,200 - OKGIIK_01620 0.42 +0.1
367,200 - OKGIIK_01620 0.42 +1.1
367,200 - OKGIIK_01620 0.42 +2.3
367,200 - OKGIIK_01620 0.42 -1.3
367,200 - OKGIIK_01620 0.42 +0.6
367,200 - OKGIIK_01620 0.42 +1.8
367,200 - OKGIIK_01620 0.42 +1.6
367,200 - OKGIIK_01620 0.42 +0.8
367,200 - OKGIIK_01620 0.42 +0.3
367,200 - OKGIIK_01620 0.42 +0.5
367,200 - OKGIIK_01620 0.42 -0.0
367,200 - OKGIIK_01620 0.42 +0.1
367,200 - OKGIIK_01620 0.42 +0.1
367,200 - OKGIIK_01620 0.42 -0.7
367,200 - OKGIIK_01620 0.42 -0.9
367,350 - OKGIIK_01620 0.63 -0.7
367,415 + OKGIIK_01620 0.72 -0.4
367,415 + OKGIIK_01620 0.72 +1.6
367,415 + OKGIIK_01620 0.72 -0.3
367,415 + OKGIIK_01620 0.72 +1.5
367,415 + OKGIIK_01620 0.72 +0.3
367,415 + OKGIIK_01620 0.72 +0.5
367,415 + OKGIIK_01620 0.72 -1.1
367,415 + OKGIIK_01620 0.72 -0.0
367,415 + OKGIIK_01620 0.72 +0.6
367,415 + OKGIIK_01620 0.72 +0.5
367,415 + OKGIIK_01620 0.72 +1.0
367,415 + OKGIIK_01620 0.72 +1.1
367,415 + OKGIIK_01620 0.72 -0.3
367,415 + OKGIIK_01620 0.72 +1.1
367,415 + OKGIIK_01620 0.72 -0.3
367,415 + OKGIIK_01620 0.72 +0.9
367,415 + OKGIIK_01620 0.72 -0.9
367,415 + OKGIIK_01620 0.72 +0.9
367,415 + OKGIIK_01620 0.72 +0.5
367,415 + OKGIIK_01620 0.72 +0.3
367,415 + OKGIIK_01620 0.72 +0.1
367,416 - OKGIIK_01620 0.72 +0.6
367,416 - OKGIIK_01620 0.72 -1.5
367,416 - OKGIIK_01620 0.72 -0.7
367,416 - OKGIIK_01620 0.72 +0.3
367,416 - OKGIIK_01620 0.72 -0.7
367,416 - OKGIIK_01620 0.72 +0.6
367,416 - OKGIIK_01620 0.72 +0.9
367,416 - OKGIIK_01620 0.72 -0.8
367,416 - OKGIIK_01620 0.72 +0.7
367,416 - OKGIIK_01620 0.72 +1.0
367,416 - OKGIIK_01620 0.72 -0.4
367,416 - OKGIIK_01620 0.72 +0.9
367,416 - OKGIIK_01620 0.72 +0.3
367,416 - OKGIIK_01620 0.72 +1.1
367,416 - OKGIIK_01620 0.72 +0.1
367,416 - OKGIIK_01620 0.72 +0.1
367,416 - OKGIIK_01620 0.72 +0.1
367,416 - OKGIIK_01620 0.72 +0.6
367,416 - OKGIIK_01620 0.72 +0.1
367,416 - OKGIIK_01620 0.72 -0.7
367,416 - OKGIIK_01620 0.72 +0.3
367,416 - OKGIIK_01620 0.72 -0.7
367,416 - OKGIIK_01620 0.72 -1.5
367,416 - OKGIIK_01620 0.72 -3.5
367,523 + OKGIIK_01620 0.87 -1.1
367,523 + OKGIIK_01620 0.87 +0.1
367,523 + OKGIIK_01620 0.87 +0.5
367,523 + OKGIIK_01620 0.87 -0.4
367,523 + OKGIIK_01620 0.87 -2.6
367,524 - OKGIIK_01620 0.87 -0.6
367,667 + +0.7
367,668 - -1.0
367,740 - -2.3
367,780 + +0.8
367,780 + -0.0
367,780 + -1.9
367,780 + -0.4
367,780 + +0.1
367,780 + +1.8
367,780 + +0.8
367,781 - +0.8
367,781 - -0.3
367,781 - +0.2
367,781 - -0.3
367,781 - +0.9
367,781 - +0.6
367,781 - +0.2
367,781 - -0.7
368,025 - OKGIIK_01625 0.27 +0.3
368,105 + OKGIIK_01625 0.35 +0.8
368,105 + OKGIIK_01625 0.35 -2.0
368,105 + OKGIIK_01625 0.35 +0.3
368,105 + OKGIIK_01625 0.35 -1.4
368,105 + OKGIIK_01625 0.35 -0.7
368,105 + OKGIIK_01625 0.35 -0.7
368,105 + OKGIIK_01625 0.35 -0.5
368,105 + OKGIIK_01625 0.35 +1.3
368,105 + OKGIIK_01625 0.35 -0.7
368,105 + OKGIIK_01625 0.35 +0.1
368,105 + OKGIIK_01625 0.35 -1.1
368,105 + OKGIIK_01625 0.35 -0.1
368,105 + OKGIIK_01625 0.35 +0.7
368,105 + OKGIIK_01625 0.35 +0.3
368,105 + OKGIIK_01625 0.35 -1.3
368,105 + OKGIIK_01625 0.35 +0.0
368,106 - OKGIIK_01625 0.35 +1.3
368,106 - OKGIIK_01625 0.35 -0.7
368,106 - OKGIIK_01625 0.35 -0.0
368,106 - OKGIIK_01625 0.35 +1.2
368,106 - OKGIIK_01625 0.35 +0.5
368,106 - OKGIIK_01625 0.35 +1.5
368,106 - OKGIIK_01625 0.35 +0.3
368,106 - OKGIIK_01625 0.35 +0.9
368,106 - OKGIIK_01625 0.35 +0.1
368,106 - OKGIIK_01625 0.35 +1.1
368,106 - OKGIIK_01625 0.35 -0.2
368,183 + OKGIIK_01625 0.43 -0.6
368,184 - OKGIIK_01625 0.43 -0.0
368,184 - OKGIIK_01625 0.43 +0.3
368,184 - OKGIIK_01625 0.43 -1.0
368,184 - OKGIIK_01625 0.43 +0.5
368,327 + OKGIIK_01625 0.59 +0.0
368,327 + OKGIIK_01625 0.59 -2.3
368,327 + OKGIIK_01625 0.59 -2.4
368,327 + OKGIIK_01625 0.59 -0.9
368,328 - OKGIIK_01625 0.59 +1.6
368,328 - OKGIIK_01625 0.59 +1.1
368,328 - OKGIIK_01625 0.59 -2.5
368,328 - OKGIIK_01625 0.59 +0.9
368,328 - OKGIIK_01625 0.59 +1.3
368,328 - OKGIIK_01625 0.59 -0.3
368,329 + OKGIIK_01625 0.59 +1.6
368,329 + OKGIIK_01625 0.59 +0.2
368,330 - OKGIIK_01625 0.59 +1.9
368,330 - OKGIIK_01625 0.59 +0.1
368,472 - OKGIIK_01625 0.74 +0.1
368,472 - OKGIIK_01625 0.74 -0.5
368,597 + OKGIIK_01625 0.87 -0.2
368,598 - OKGIIK_01625 0.87 +0.6
368,598 - OKGIIK_01625 0.87 -1.7
368,598 - OKGIIK_01625 0.87 -1.0

Or see this region's nucleotide sequence