Strain Fitness in Pseudomonas sp. DMC3 around GFF97

Experiment: Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF95 and GFF96 overlap by 1 nucleotidesGFF96 and GFF97 are separated by 69 nucleotidesGFF97 and GFF98 are separated by 258 nucleotides GFF95 - Sensor protein CreC, at 109,415 to 110,833 GFF95 GFF96 - Transcriptional regulatory protein CreB, at 110,833 to 111,513 GFF96 GFF97 - hypothetical protein, at 111,583 to 112,089 GFF97 GFF98 - putative acyltransferase YihG, at 112,348 to 113,235 GFF98 Position (kb) 111 112 113Strain fitness (log2 ratio) -1 0 1at 110.802 kb on + strandat 110.802 kb on + strandat 110.802 kb on + strandat 110.802 kb on + strandat 110.803 kb on - strandat 110.803 kb on - strandat 110.852 kb on + strandat 110.852 kb on + strandat 110.853 kb on - strandat 110.853 kb on - strandat 111.221 kb on + strand, within GFF96at 111.222 kb on - strand, within GFF96at 111.584 kb on + strandat 111.585 kb on - strandat 111.585 kb on - strandat 111.585 kb on - strandat 111.609 kb on - strandat 111.674 kb on + strand, within GFF97at 111.675 kb on - strand, within GFF97at 111.675 kb on - strand, within GFF97at 111.675 kb on - strand, within GFF97at 111.837 kb on + strand, within GFF97at 112.007 kb on + strand, within GFF97at 112.007 kb on + strand, within GFF97at 112.008 kb on - strand, within GFF97at 112.023 kb on - strand, within GFF97at 112.091 kb on + strandat 112.092 kb on - strandat 112.128 kb on - strandat 112.128 kb on - strandat 112.128 kb on - strandat 112.311 kb on + strandat 112.311 kb on + strandat 112.311 kb on + strandat 112.338 kb on - strandat 112.338 kb on - strandat 112.338 kb on - strandat 112.348 kb on - strandat 112.348 kb on - strandat 112.391 kb on + strandat 112.392 kb on - strandat 112.471 kb on + strand, within GFF98at 112.545 kb on - strand, within GFF98at 112.545 kb on - strand, within GFF98at 112.597 kb on + strand, within GFF98at 112.597 kb on + strand, within GFF98at 112.598 kb on - strand, within GFF98at 112.598 kb on - strand, within GFF98at 112.763 kb on - strand, within GFF98at 112.870 kb on + strand, within GFF98at 113.018 kb on + strand, within GFF98at 113.018 kb on + strand, within GFF98at 113.019 kb on - strand, within GFF98at 113.019 kb on - strand, within GFF98at 113.019 kb on - strand, within GFF98at 113.019 kb on - strand, within GFF98at 113.019 kb on - strand, within GFF98at 113.019 kb on - strand, within GFF98at 113.019 kb on - strand, within GFF98at 113.019 kb on - strand, within GFF98at 113.020 kb on + strand, within GFF98at 113.020 kb on + strand, within GFF98at 113.021 kb on - strand, within GFF98

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane
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110,802 + +0.3
110,802 + -1.0
110,802 + -0.1
110,802 + -0.6
110,803 - -0.3
110,803 - +0.4
110,852 + -0.2
110,852 + +0.1
110,853 - -0.6
110,853 - -0.6
111,221 + GFF96 0.57 -0.4
111,222 - GFF96 0.57 -0.1
111,584 + -0.4
111,585 - +0.6
111,585 - -1.0
111,585 - +0.2
111,609 - +0.3
111,674 + GFF97 0.18 +0.2
111,675 - GFF97 0.18 +1.2
111,675 - GFF97 0.18 -0.1
111,675 - GFF97 0.18 +0.4
111,837 + GFF97 0.50 +0.1
112,007 + GFF97 0.84 -1.4
112,007 + GFF97 0.84 +0.8
112,008 - GFF97 0.84 +0.7
112,023 - GFF97 0.87 -0.5
112,091 + +0.1
112,092 - +1.2
112,128 - +0.2
112,128 - -0.7
112,128 - +0.5
112,311 + -0.4
112,311 + +0.3
112,311 + -0.4
112,338 - -1.1
112,338 - -1.3
112,338 - -1.1
112,348 - -0.9
112,348 - +0.7
112,391 + +0.1
112,392 - -0.2
112,471 + GFF98 0.14 +0.7
112,545 - GFF98 0.22 +0.8
112,545 - GFF98 0.22 +0.8
112,597 + GFF98 0.28 -0.0
112,597 + GFF98 0.28 +0.6
112,598 - GFF98 0.28 +0.9
112,598 - GFF98 0.28 +0.1
112,763 - GFF98 0.47 -1.6
112,870 + GFF98 0.59 +1.0
113,018 + GFF98 0.75 +0.8
113,018 + GFF98 0.75 -0.4
113,019 - GFF98 0.76 -0.4
113,019 - GFF98 0.76 -0.3
113,019 - GFF98 0.76 -0.3
113,019 - GFF98 0.76 -0.2
113,019 - GFF98 0.76 +0.1
113,019 - GFF98 0.76 -0.9
113,019 - GFF98 0.76 -0.2
113,019 - GFF98 0.76 -0.1
113,020 + GFF98 0.76 +1.1
113,020 + GFF98 0.76 -1.5
113,021 - GFF98 0.76 -0.8

Or see this region's nucleotide sequence