Experiment: Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF935 and GFF936 are separated by 54 nucleotides GFF936 and GFF937 are separated by 241 nucleotides GFF937 and GFF938 overlap by 8 nucleotides
GFF935 - hypothetical protein, at 267,140 to 268,123
GFF935
GFF936 - Nodulation protein D 2, at 268,178 to 269,101
GFF936
GFF937 - hypothetical protein, at 269,343 to 269,756
GFF937
GFF938 - hypothetical protein, at 269,749 to 270,375
GFF938
Position (kb) 268
269
270 Strain fitness (log2 ratio) -1
0
1 at 267.240 kb on - strand, within GFF935 at 267.638 kb on + strand, within GFF935 at 267.639 kb on - strand, within GFF935 at 267.723 kb on - strand, within GFF935 at 267.970 kb on - strand, within GFF935 at 268.088 kb on + strand at 268.088 kb on + strand at 268.088 kb on + strand at 268.088 kb on + strand at 268.122 kb on - strand at 268.186 kb on + strand at 268.533 kb on + strand, within GFF936 at 268.589 kb on + strand, within GFF936 at 268.590 kb on - strand, within GFF936 at 268.590 kb on - strand, within GFF936 at 268.590 kb on - strand, within GFF936 at 268.643 kb on + strand, within GFF936 at 268.643 kb on + strand, within GFF936 at 268.643 kb on + strand, within GFF936 at 268.690 kb on + strand, within GFF936 at 268.749 kb on - strand, within GFF936 at 269.099 kb on + strand at 269.100 kb on - strand at 269.100 kb on - strand at 269.100 kb on - strand at 269.100 kb on - strand at 269.100 kb on - strand at 269.269 kb on + strand at 269.269 kb on + strand at 269.269 kb on + strand at 269.270 kb on - strand at 269.270 kb on - strand at 269.351 kb on + strand at 269.352 kb on - strand at 269.588 kb on + strand, within GFF937 at 269.588 kb on + strand, within GFF937 at 269.690 kb on - strand, within GFF937 at 269.748 kb on + strand at 269.749 kb on - strand at 269.942 kb on - strand, within GFF938 at 269.951 kb on + strand, within GFF938
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane remove 267,240 - GFF935 0.10 +0.9 267,638 + GFF935 0.51 -0.2 267,639 - GFF935 0.51 -0.8 267,723 - GFF935 0.59 -0.4 267,970 - GFF935 0.84 -1.3 268,088 + +0.2 268,088 + -0.9 268,088 + -0.7 268,088 + +0.1 268,122 - -0.2 268,186 + -0.3 268,533 + GFF936 0.38 +0.2 268,589 + GFF936 0.44 -0.3 268,590 - GFF936 0.45 +0.7 268,590 - GFF936 0.45 +0.1 268,590 - GFF936 0.45 -0.0 268,643 + GFF936 0.50 +1.2 268,643 + GFF936 0.50 +0.0 268,643 + GFF936 0.50 -1.1 268,690 + GFF936 0.55 -0.8 268,749 - GFF936 0.62 -0.6 269,099 + -0.4 269,100 - -0.2 269,100 - -0.7 269,100 - +0.1 269,100 - +0.2 269,100 - +0.4 269,269 + +0.7 269,269 + +0.2 269,269 + +0.9 269,270 - +0.6 269,270 - -1.6 269,351 + +0.6 269,352 - +0.7 269,588 + GFF937 0.59 +0.7 269,588 + GFF937 0.59 -0.4 269,690 - GFF937 0.84 -0.3 269,748 + +1.0 269,749 - +0.1 269,942 - GFF938 0.31 -0.5 269,951 + GFF938 0.32 -0.3
Or see this region's nucleotide sequence