Experiment: Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF589 and GFF590 are separated by 21 nucleotides GFF590 and GFF591 overlap by 4 nucleotides
GFF589 - Trk system potassium uptake protein TrkA, at 656,062 to 657,438
GFF589
GFF590 - Ribosomal RNA small subunit methyltransferase B, at 657,460 to 658,770
GFF590
GFF591 - Methionyl-tRNA formyltransferase, at 658,767 to 659,726
GFF591
Position (kb) 657
658
659 Strain fitness (log2 ratio) -1
0
1 at 656.541 kb on + strand, within GFF589 at 656.605 kb on + strand, within GFF589 at 656.744 kb on + strand, within GFF589 at 656.744 kb on + strand, within GFF589 at 656.744 kb on + strand, within GFF589 at 656.745 kb on - strand, within GFF589 at 656.745 kb on - strand, within GFF589 at 656.957 kb on + strand, within GFF589 at 656.957 kb on + strand, within GFF589 at 656.957 kb on + strand, within GFF589 at 656.958 kb on - strand, within GFF589 at 657.044 kb on + strand, within GFF589 at 657.044 kb on + strand, within GFF589 at 657.044 kb on + strand, within GFF589 at 657.045 kb on - strand, within GFF589 at 657.045 kb on - strand, within GFF589 at 657.045 kb on - strand, within GFF589 at 657.045 kb on - strand, within GFF589 at 657.045 kb on - strand, within GFF589 at 657.128 kb on + strand, within GFF589 at 657.128 kb on + strand, within GFF589 at 657.128 kb on + strand, within GFF589 at 657.129 kb on - strand, within GFF589 at 657.129 kb on - strand, within GFF589 at 657.497 kb on + strand at 657.497 kb on + strand at 657.500 kb on + strand at 657.500 kb on + strand at 657.501 kb on - strand at 658.169 kb on + strand, within GFF590 at 658.217 kb on + strand, within GFF590 at 658.217 kb on + strand, within GFF590 at 658.217 kb on + strand, within GFF590 at 658.217 kb on + strand, within GFF590 at 658.217 kb on + strand, within GFF590 at 658.217 kb on + strand, within GFF590 at 658.218 kb on - strand, within GFF590 at 658.514 kb on + strand, within GFF590 at 658.729 kb on + strand at 659.741 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane remove 656,541 + GFF589 0.35 +0.5 656,605 + GFF589 0.39 +0.0 656,744 + GFF589 0.50 +0.3 656,744 + GFF589 0.50 +0.1 656,744 + GFF589 0.50 -0.8 656,745 - GFF589 0.50 +0.7 656,745 - GFF589 0.50 +0.4 656,957 + GFF589 0.65 -1.2 656,957 + GFF589 0.65 -0.4 656,957 + GFF589 0.65 -0.0 656,958 - GFF589 0.65 -1.1 657,044 + GFF589 0.71 -0.6 657,044 + GFF589 0.71 +0.4 657,044 + GFF589 0.71 -1.5 657,045 - GFF589 0.71 +0.4 657,045 - GFF589 0.71 -0.8 657,045 - GFF589 0.71 +0.4 657,045 - GFF589 0.71 -0.6 657,045 - GFF589 0.71 -0.3 657,128 + GFF589 0.77 +0.3 657,128 + GFF589 0.77 -0.3 657,128 + GFF589 0.77 -0.4 657,129 - GFF589 0.77 +0.8 657,129 - GFF589 0.77 +0.0 657,497 + -0.2 657,497 + -1.4 657,500 + +0.2 657,500 + -0.5 657,501 - -0.2 658,169 + GFF590 0.54 +1.4 658,217 + GFF590 0.58 -0.7 658,217 + GFF590 0.58 +0.6 658,217 + GFF590 0.58 -0.0 658,217 + GFF590 0.58 +0.2 658,217 + GFF590 0.58 +0.8 658,217 + GFF590 0.58 +0.0 658,218 - GFF590 0.58 +1.2 658,514 + GFF590 0.80 -1.4 658,729 + -0.9 659,741 - +0.2
Or see this region's nucleotide sequence