Experiment: Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3507 and GFF3508 overlap by 4 nucleotides GFF3508 and GFF3509 are separated by 174 nucleotides
GFF3507 - Multidrug resistance protein MdtB, at 83,332 to 86,433
GFF3507
GFF3508 - Multidrug resistance protein MdtA, at 86,430 to 87,734
GFF3508
GFF3509 - Thiol peroxidase, at 87,909 to 88,409
GFF3509
Position (kb) 86
87
88 Strain fitness (log2 ratio) -1
0
1
2 at 85.692 kb on - strand, within GFF3507 at 85.692 kb on - strand, within GFF3507 at 85.692 kb on - strand, within GFF3507 at 85.712 kb on + strand, within GFF3507 at 86.049 kb on - strand, within GFF3507 at 86.049 kb on - strand, within GFF3507 at 86.518 kb on - strand at 86.518 kb on - strand at 86.518 kb on - strand at 86.652 kb on + strand, within GFF3508 at 86.653 kb on - strand, within GFF3508 at 86.692 kb on + strand, within GFF3508 at 86.693 kb on - strand, within GFF3508 at 86.745 kb on + strand, within GFF3508 at 86.746 kb on - strand, within GFF3508 at 86.746 kb on - strand, within GFF3508 at 86.769 kb on + strand, within GFF3508 at 86.769 kb on + strand, within GFF3508 at 86.822 kb on - strand, within GFF3508 at 87.184 kb on + strand, within GFF3508 at 87.184 kb on + strand, within GFF3508 at 87.185 kb on - strand, within GFF3508 at 87.242 kb on + strand, within GFF3508 at 87.243 kb on - strand, within GFF3508 at 87.243 kb on - strand, within GFF3508 at 87.243 kb on - strand, within GFF3508 at 87.244 kb on + strand, within GFF3508 at 87.244 kb on + strand, within GFF3508 at 87.245 kb on - strand, within GFF3508 at 87.245 kb on - strand, within GFF3508 at 87.245 kb on - strand, within GFF3508 at 87.449 kb on + strand, within GFF3508 at 87.449 kb on + strand, within GFF3508 at 87.481 kb on + strand, within GFF3508 at 87.481 kb on + strand, within GFF3508 at 87.481 kb on + strand, within GFF3508 at 87.481 kb on + strand, within GFF3508 at 87.482 kb on - strand, within GFF3508 at 87.482 kb on - strand, within GFF3508 at 87.482 kb on - strand, within GFF3508 at 87.482 kb on - strand, within GFF3508 at 87.482 kb on - strand, within GFF3508 at 87.485 kb on - strand, within GFF3508 at 87.725 kb on + strand at 87.725 kb on + strand at 87.726 kb on - strand at 87.752 kb on - strand at 87.752 kb on - strand at 87.752 kb on - strand at 87.771 kb on + strand at 87.772 kb on - strand at 87.789 kb on - strand at 87.789 kb on - strand at 87.814 kb on + strand at 87.815 kb on - strand at 87.825 kb on + strand at 87.825 kb on + strand at 87.855 kb on + strand at 87.901 kb on + strand at 87.910 kb on + strand at 87.911 kb on - strand at 87.937 kb on + strand at 87.937 kb on + strand at 87.941 kb on + strand at 87.942 kb on - strand at 88.061 kb on - strand, within GFF3509 at 88.461 kb on - strand at 88.484 kb on + strand at 88.485 kb on - strand at 88.529 kb on - strand at 88.574 kb on - strand at 88.681 kb on + strand at 88.681 kb on + strand at 88.682 kb on - strand at 88.698 kb on + strand at 88.698 kb on + strand at 88.723 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane remove 85,692 - GFF3507 0.76 +1.1 85,692 - GFF3507 0.76 +0.3 85,692 - GFF3507 0.76 -1.2 85,712 + GFF3507 0.77 -1.1 86,049 - GFF3507 0.88 +0.1 86,049 - GFF3507 0.88 -0.5 86,518 - -1.5 86,518 - -0.3 86,518 - -0.6 86,652 + GFF3508 0.17 -0.3 86,653 - GFF3508 0.17 +0.2 86,692 + GFF3508 0.20 -0.3 86,693 - GFF3508 0.20 -0.3 86,745 + GFF3508 0.24 +0.2 86,746 - GFF3508 0.24 -0.6 86,746 - GFF3508 0.24 +0.3 86,769 + GFF3508 0.26 +0.1 86,769 + GFF3508 0.26 -0.5 86,822 - GFF3508 0.30 +0.3 87,184 + GFF3508 0.58 +0.3 87,184 + GFF3508 0.58 +0.3 87,185 - GFF3508 0.58 +1.3 87,242 + GFF3508 0.62 -0.3 87,243 - GFF3508 0.62 +0.2 87,243 - GFF3508 0.62 +0.0 87,243 - GFF3508 0.62 +0.2 87,244 + GFF3508 0.62 -0.8 87,244 + GFF3508 0.62 +0.5 87,245 - GFF3508 0.62 +1.3 87,245 - GFF3508 0.62 +0.1 87,245 - GFF3508 0.62 -0.4 87,449 + GFF3508 0.78 +0.3 87,449 + GFF3508 0.78 +0.6 87,481 + GFF3508 0.81 -0.0 87,481 + GFF3508 0.81 -1.0 87,481 + GFF3508 0.81 -0.9 87,481 + GFF3508 0.81 -0.3 87,482 - GFF3508 0.81 -0.3 87,482 - GFF3508 0.81 -0.5 87,482 - GFF3508 0.81 +0.3 87,482 - GFF3508 0.81 +0.5 87,482 - GFF3508 0.81 -1.3 87,485 - GFF3508 0.81 -1.4 87,725 + +1.9 87,725 + -0.1 87,726 - +0.1 87,752 - +0.4 87,752 - -0.3 87,752 - +0.8 87,771 + -0.2 87,772 - +0.1 87,789 - +1.2 87,789 - -0.8 87,814 + +0.9 87,815 - +0.1 87,825 + -1.5 87,825 + +1.1 87,855 + -0.3 87,901 + -1.1 87,910 + -0.6 87,911 - -0.7 87,937 + +0.1 87,937 + -0.3 87,941 + -0.2 87,942 - +0.1 88,061 - GFF3509 0.30 -0.3 88,461 - -1.7 88,484 + +1.1 88,485 - +1.0 88,529 - -0.0 88,574 - +0.7 88,681 + +0.4 88,681 + -0.7 88,682 - -0.6 88,698 + -0.7 88,698 + +0.2 88,723 + +0.3
Or see this region's nucleotide sequence