Experiment: Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3169 and GFF3170 are separated by 54 nucleotides GFF3170 and GFF3171 are separated by 54 nucleotides
GFF3169 - hypothetical protein, at 130,759 to 131,715
GFF3169
GFF3170 - hypothetical protein, at 131,770 to 132,531
GFF3170
GFF3171 - D-inositol-3-phosphate glycosyltransferase, at 132,586 to 133,680
GFF3171
Position (kb) 131
132
133 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 130.770 kb on - strand at 130.813 kb on + strand at 130.813 kb on + strand at 130.814 kb on - strand at 130.814 kb on - strand at 130.889 kb on - strand, within GFF3169 at 131.026 kb on + strand, within GFF3169 at 131.026 kb on + strand, within GFF3169 at 131.026 kb on + strand, within GFF3169 at 131.027 kb on - strand, within GFF3169 at 131.027 kb on - strand, within GFF3169 at 131.027 kb on - strand, within GFF3169 at 131.027 kb on - strand, within GFF3169 at 131.027 kb on - strand, within GFF3169 at 131.027 kb on - strand, within GFF3169 at 131.027 kb on - strand, within GFF3169 at 131.042 kb on - strand, within GFF3169 at 131.042 kb on - strand, within GFF3169 at 131.065 kb on + strand, within GFF3169 at 131.245 kb on + strand, within GFF3169 at 131.246 kb on - strand, within GFF3169 at 131.246 kb on - strand, within GFF3169 at 131.327 kb on - strand, within GFF3169 at 131.438 kb on - strand, within GFF3169 at 131.438 kb on - strand, within GFF3169 at 131.438 kb on - strand, within GFF3169 at 131.438 kb on - strand, within GFF3169 at 131.501 kb on - strand, within GFF3169 at 131.725 kb on + strand at 131.726 kb on - strand at 131.726 kb on - strand at 131.728 kb on - strand at 131.766 kb on - strand at 131.796 kb on + strand at 131.796 kb on + strand at 131.797 kb on - strand at 131.797 kb on - strand at 131.797 kb on - strand at 131.797 kb on - strand at 131.797 kb on - strand at 131.797 kb on - strand at 131.797 kb on - strand at 131.797 kb on - strand at 131.808 kb on + strand at 131.850 kb on + strand, within GFF3170 at 131.850 kb on + strand, within GFF3170 at 131.864 kb on - strand, within GFF3170 at 132.034 kb on + strand, within GFF3170 at 132.034 kb on + strand, within GFF3170 at 132.034 kb on + strand, within GFF3170 at 132.034 kb on + strand, within GFF3170 at 132.034 kb on + strand, within GFF3170 at 132.034 kb on + strand, within GFF3170 at 132.035 kb on - strand, within GFF3170 at 132.035 kb on - strand, within GFF3170 at 132.035 kb on - strand, within GFF3170 at 132.035 kb on - strand, within GFF3170 at 132.035 kb on - strand, within GFF3170 at 132.035 kb on - strand, within GFF3170 at 132.035 kb on - strand, within GFF3170 at 132.035 kb on - strand, within GFF3170 at 132.035 kb on - strand, within GFF3170 at 132.035 kb on - strand, within GFF3170 at 132.035 kb on - strand, within GFF3170 at 132.035 kb on - strand, within GFF3170 at 132.036 kb on + strand, within GFF3170 at 132.036 kb on + strand, within GFF3170 at 132.036 kb on + strand, within GFF3170 at 132.037 kb on - strand, within GFF3170 at 132.068 kb on - strand, within GFF3170 at 132.145 kb on + strand, within GFF3170 at 132.146 kb on - strand, within GFF3170 at 132.146 kb on - strand, within GFF3170 at 132.146 kb on - strand, within GFF3170 at 132.146 kb on - strand, within GFF3170 at 132.146 kb on - strand, within GFF3170 at 132.146 kb on - strand, within GFF3170 at 132.146 kb on - strand, within GFF3170 at 132.147 kb on + strand, within GFF3170 at 132.147 kb on + strand, within GFF3170 at 132.147 kb on + strand, within GFF3170 at 132.147 kb on + strand, within GFF3170 at 132.148 kb on - strand, within GFF3170 at 132.148 kb on - strand, within GFF3170 at 132.175 kb on + strand, within GFF3170 at 132.175 kb on + strand, within GFF3170 at 132.175 kb on + strand, within GFF3170 at 132.175 kb on + strand, within GFF3170 at 132.175 kb on + strand, within GFF3170 at 132.175 kb on + strand, within GFF3170 at 132.175 kb on + strand, within GFF3170 at 132.175 kb on + strand, within GFF3170 at 132.175 kb on + strand, within GFF3170 at 132.176 kb on - strand, within GFF3170 at 132.176 kb on - strand, within GFF3170 at 132.176 kb on - strand, within GFF3170 at 132.176 kb on - strand, within GFF3170 at 132.176 kb on - strand, within GFF3170 at 132.176 kb on - strand, within GFF3170 at 132.176 kb on - strand, within GFF3170 at 132.176 kb on - strand, within GFF3170 at 132.176 kb on - strand, within GFF3170 at 132.176 kb on - strand, within GFF3170 at 132.176 kb on - strand, within GFF3170 at 132.220 kb on + strand, within GFF3170 at 132.377 kb on + strand, within GFF3170 at 132.378 kb on - strand, within GFF3170 at 132.431 kb on - strand, within GFF3170 at 132.586 kb on - strand at 132.592 kb on - strand at 132.600 kb on + strand at 132.601 kb on - strand at 132.601 kb on - strand at 132.640 kb on - strand at 132.640 kb on - strand at 132.656 kb on + strand at 132.656 kb on + strand at 132.656 kb on + strand at 132.657 kb on - strand at 132.657 kb on - strand at 132.657 kb on - strand at 132.657 kb on - strand at 132.657 kb on - strand at 132.933 kb on - strand, within GFF3171 at 133.175 kb on + strand, within GFF3171 at 133.385 kb on - strand, within GFF3171
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane remove 130,770 - -0.3 130,813 + +1.1 130,813 + -2.3 130,814 - -1.7 130,814 - -0.5 130,889 - GFF3169 0.14 -2.7 131,026 + GFF3169 0.28 -1.1 131,026 + GFF3169 0.28 -0.5 131,026 + GFF3169 0.28 +0.5 131,027 - GFF3169 0.28 -1.1 131,027 - GFF3169 0.28 -1.2 131,027 - GFF3169 0.28 -0.8 131,027 - GFF3169 0.28 -1.3 131,027 - GFF3169 0.28 -0.6 131,027 - GFF3169 0.28 +0.3 131,027 - GFF3169 0.28 +1.3 131,042 - GFF3169 0.30 -3.1 131,042 - GFF3169 0.30 -0.7 131,065 + GFF3169 0.32 -0.3 131,245 + GFF3169 0.51 -1.1 131,246 - GFF3169 0.51 -2.6 131,246 - GFF3169 0.51 +0.3 131,327 - GFF3169 0.59 -1.3 131,438 - GFF3169 0.71 -1.2 131,438 - GFF3169 0.71 +0.3 131,438 - GFF3169 0.71 -0.7 131,438 - GFF3169 0.71 -0.5 131,501 - GFF3169 0.78 -1.1 131,725 + -0.2 131,726 - -0.7 131,726 - -1.2 131,728 - -1.2 131,766 - -0.2 131,796 + -0.9 131,796 + -1.5 131,797 - -0.1 131,797 - -2.2 131,797 - -1.0 131,797 - -0.6 131,797 - -0.7 131,797 - -0.2 131,797 - -1.5 131,797 - -1.2 131,808 + +0.2 131,850 + GFF3170 0.10 -0.5 131,850 + GFF3170 0.10 -0.1 131,864 - GFF3170 0.12 +0.3 132,034 + GFF3170 0.35 -0.1 132,034 + GFF3170 0.35 -1.2 132,034 + GFF3170 0.35 -1.3 132,034 + GFF3170 0.35 -1.5 132,034 + GFF3170 0.35 -0.5 132,034 + GFF3170 0.35 -0.3 132,035 - GFF3170 0.35 +0.0 132,035 - GFF3170 0.35 -1.8 132,035 - GFF3170 0.35 -1.9 132,035 - GFF3170 0.35 +0.5 132,035 - GFF3170 0.35 -1.1 132,035 - GFF3170 0.35 +1.2 132,035 - GFF3170 0.35 -1.3 132,035 - GFF3170 0.35 -1.1 132,035 - GFF3170 0.35 +0.0 132,035 - GFF3170 0.35 -0.9 132,035 - GFF3170 0.35 -0.6 132,035 - GFF3170 0.35 -1.1 132,036 + GFF3170 0.35 -0.1 132,036 + GFF3170 0.35 -1.8 132,036 + GFF3170 0.35 -0.5 132,037 - GFF3170 0.35 -0.4 132,068 - GFF3170 0.39 +0.7 132,145 + GFF3170 0.49 -0.5 132,146 - GFF3170 0.49 -0.3 132,146 - GFF3170 0.49 +0.5 132,146 - GFF3170 0.49 +1.8 132,146 - GFF3170 0.49 -0.1 132,146 - GFF3170 0.49 -0.9 132,146 - GFF3170 0.49 -0.1 132,146 - GFF3170 0.49 -0.5 132,147 + GFF3170 0.49 -0.1 132,147 + GFF3170 0.49 +0.2 132,147 + GFF3170 0.49 -0.5 132,147 + GFF3170 0.49 -0.4 132,148 - GFF3170 0.50 -1.8 132,148 - GFF3170 0.50 -1.3 132,175 + GFF3170 0.53 -0.8 132,175 + GFF3170 0.53 -0.3 132,175 + GFF3170 0.53 -0.4 132,175 + GFF3170 0.53 +0.5 132,175 + GFF3170 0.53 +0.2 132,175 + GFF3170 0.53 +0.8 132,175 + GFF3170 0.53 -1.1 132,175 + GFF3170 0.53 -0.6 132,175 + GFF3170 0.53 +0.5 132,176 - GFF3170 0.53 -2.5 132,176 - GFF3170 0.53 -1.2 132,176 - GFF3170 0.53 -1.7 132,176 - GFF3170 0.53 -2.3 132,176 - GFF3170 0.53 -0.7 132,176 - GFF3170 0.53 -0.5 132,176 - GFF3170 0.53 -1.2 132,176 - GFF3170 0.53 -2.2 132,176 - GFF3170 0.53 +0.2 132,176 - GFF3170 0.53 -1.0 132,176 - GFF3170 0.53 -0.6 132,220 + GFF3170 0.59 -0.5 132,377 + GFF3170 0.80 -0.6 132,378 - GFF3170 0.80 +0.6 132,431 - GFF3170 0.87 +0.2 132,586 - -1.6 132,592 - +0.0 132,600 + +0.0 132,601 - -1.1 132,601 - -1.1 132,640 - -1.1 132,640 - -0.6 132,656 + -0.1 132,656 + +0.9 132,656 + -0.8 132,657 - -0.3 132,657 - -0.6 132,657 - +0.5 132,657 - -0.5 132,657 - -1.5 132,933 - GFF3171 0.32 -1.6 133,175 + GFF3171 0.54 +0.5 133,385 - GFF3171 0.73 +0.1
Or see this region's nucleotide sequence