Experiment: Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2471 and GFF2472 overlap by 4 nucleotides GFF2472 and GFF2473 are separated by 155 nucleotides GFF2473 and GFF2474 are separated by 18 nucleotides GFF2474 and GFF2475 are separated by 53 nucleotides
GFF2471 - Flagellum site-determining protein YlxH, at 259,021 to 259,851
GFF2471
GFF2472 - RNA polymerase sigma factor FliA, at 259,848 to 260,588
GFF2472
GFF2473 - Chemotaxis protein CheY, at 260,744 to 261,127
GFF2473
GFF2474 - Protein phosphatase CheZ, at 261,146 to 261,934
GFF2474
GFF2475 - hypothetical protein, at 261,988 to 264,264
GFF2475
Position (kb) 260
261
262 Strain fitness (log2 ratio) -1
0
1
2 at 259.847 kb on + strand at 259.847 kb on + strand at 259.848 kb on - strand at 259.848 kb on - strand at 259.872 kb on + strand at 259.899 kb on + strand at 259.900 kb on - strand at 259.900 kb on - strand at 259.944 kb on + strand, within GFF2472 at 259.945 kb on - strand, within GFF2472 at 259.945 kb on - strand, within GFF2472 at 259.945 kb on - strand, within GFF2472 at 260.034 kb on + strand, within GFF2472 at 260.034 kb on + strand, within GFF2472 at 260.034 kb on + strand, within GFF2472 at 260.034 kb on + strand, within GFF2472 at 260.068 kb on - strand, within GFF2472 at 260.144 kb on + strand, within GFF2472 at 260.144 kb on + strand, within GFF2472 at 260.144 kb on + strand, within GFF2472 at 260.144 kb on + strand, within GFF2472 at 260.145 kb on - strand, within GFF2472 at 260.148 kb on - strand, within GFF2472 at 260.148 kb on - strand, within GFF2472 at 260.186 kb on + strand, within GFF2472 at 260.186 kb on + strand, within GFF2472 at 260.187 kb on - strand, within GFF2472 at 260.187 kb on - strand, within GFF2472 at 260.187 kb on - strand, within GFF2472 at 260.250 kb on + strand, within GFF2472 at 260.253 kb on + strand, within GFF2472 at 260.254 kb on - strand, within GFF2472 at 260.254 kb on - strand, within GFF2472 at 260.357 kb on + strand, within GFF2472 at 260.357 kb on + strand, within GFF2472 at 260.358 kb on - strand, within GFF2472 at 260.358 kb on - strand, within GFF2472 at 260.358 kb on - strand, within GFF2472 at 260.457 kb on + strand, within GFF2472 at 260.458 kb on - strand, within GFF2472 at 260.460 kb on + strand, within GFF2472 at 260.461 kb on - strand, within GFF2472 at 260.461 kb on - strand, within GFF2472 at 260.461 kb on - strand, within GFF2472 at 260.461 kb on - strand, within GFF2472 at 260.679 kb on + strand at 260.679 kb on + strand at 260.680 kb on - strand at 260.724 kb on - strand at 260.998 kb on + strand, within GFF2473 at 261.056 kb on + strand, within GFF2473 at 261.056 kb on + strand, within GFF2473 at 261.056 kb on + strand, within GFF2473 at 261.057 kb on - strand, within GFF2473 at 261.057 kb on - strand, within GFF2473 at 261.057 kb on - strand, within GFF2473 at 261.145 kb on + strand at 261.146 kb on - strand at 261.146 kb on - strand at 261.146 kb on - strand at 261.146 kb on - strand at 261.155 kb on - strand at 261.416 kb on + strand, within GFF2474 at 261.416 kb on + strand, within GFF2474 at 261.668 kb on + strand, within GFF2474 at 261.669 kb on - strand, within GFF2474 at 261.869 kb on - strand at 261.933 kb on - strand at 261.964 kb on + strand at 261.972 kb on + strand at 261.973 kb on - strand at 261.987 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane remove 259,847 + +0.6 259,847 + +1.0 259,848 - +0.5 259,848 - +1.0 259,872 + +0.8 259,899 + +0.4 259,900 - +0.4 259,900 - +2.1 259,944 + GFF2472 0.13 +0.5 259,945 - GFF2472 0.13 +0.6 259,945 - GFF2472 0.13 +0.4 259,945 - GFF2472 0.13 +1.2 260,034 + GFF2472 0.25 +1.2 260,034 + GFF2472 0.25 +1.0 260,034 + GFF2472 0.25 +1.3 260,034 + GFF2472 0.25 +1.2 260,068 - GFF2472 0.30 +1.3 260,144 + GFF2472 0.40 +1.0 260,144 + GFF2472 0.40 +1.6 260,144 + GFF2472 0.40 +0.4 260,144 + GFF2472 0.40 +1.0 260,145 - GFF2472 0.40 +0.7 260,148 - GFF2472 0.40 +1.2 260,148 - GFF2472 0.40 +1.8 260,186 + GFF2472 0.46 +0.4 260,186 + GFF2472 0.46 +0.7 260,187 - GFF2472 0.46 -0.2 260,187 - GFF2472 0.46 +1.1 260,187 - GFF2472 0.46 +0.7 260,250 + GFF2472 0.54 +1.3 260,253 + GFF2472 0.55 +0.1 260,254 - GFF2472 0.55 -0.2 260,254 - GFF2472 0.55 -0.8 260,357 + GFF2472 0.69 +1.0 260,357 + GFF2472 0.69 +0.8 260,358 - GFF2472 0.69 +2.3 260,358 - GFF2472 0.69 +1.7 260,358 - GFF2472 0.69 +1.0 260,457 + GFF2472 0.82 +0.3 260,458 - GFF2472 0.82 +0.9 260,460 + GFF2472 0.83 +0.9 260,461 - GFF2472 0.83 +1.1 260,461 - GFF2472 0.83 +0.8 260,461 - GFF2472 0.83 +0.6 260,461 - GFF2472 0.83 +1.6 260,679 + -0.8 260,679 + -0.1 260,680 - +0.8 260,724 - +0.9 260,998 + GFF2473 0.66 +1.2 261,056 + GFF2473 0.81 -0.2 261,056 + GFF2473 0.81 -1.2 261,056 + GFF2473 0.81 +0.1 261,057 - GFF2473 0.82 +1.0 261,057 - GFF2473 0.82 +0.7 261,057 - GFF2473 0.82 +0.2 261,145 + +0.0 261,146 - -0.3 261,146 - -0.7 261,146 - -0.9 261,146 - -0.4 261,155 - -0.6 261,416 + GFF2474 0.34 +0.2 261,416 + GFF2474 0.34 +0.9 261,668 + GFF2474 0.66 +0.2 261,669 - GFF2474 0.66 +0.2 261,869 - -0.8 261,933 - +0.1 261,964 + -0.3 261,972 + -0.1 261,973 - -0.1 261,987 - +0.8
Or see this region's nucleotide sequence