Experiment: Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2341 and GFF2342 are separated by 394 nucleotides GFF2342 and GFF2343 are separated by 135 nucleotides GFF2343 and GFF2344 overlap by 7 nucleotides
GFF2341 - hypothetical protein, at 114,352 to 118,263
GFF2341
GFF2342 - Beta-ketodecanoyl-[acyl-carrier-protein] synthase, at 118,658 to 119,779
GFF2342
GFF2343 - ECF RNA polymerase sigma-E factor, at 119,915 to 120,526
GFF2343
GFF2344 - hypothetical protein, at 120,520 to 120,756
GFF2344
Position (kb) 118
119
120 Strain fitness (log2 ratio) -2
-1
0
1 at 117.995 kb on - strand at 118.090 kb on + strand at 118.091 kb on - strand at 118.151 kb on - strand at 118.151 kb on - strand at 118.274 kb on + strand at 118.274 kb on + strand at 118.274 kb on + strand at 118.274 kb on + strand at 118.275 kb on - strand at 118.275 kb on - strand at 118.592 kb on + strand at 118.592 kb on + strand at 118.592 kb on + strand at 118.593 kb on - strand at 118.593 kb on - strand at 118.612 kb on - strand at 118.612 kb on - strand at 118.646 kb on - strand at 118.663 kb on + strand at 118.664 kb on - strand at 118.664 kb on - strand at 118.691 kb on + strand at 118.691 kb on + strand at 118.691 kb on + strand at 118.741 kb on + strand at 118.745 kb on + strand at 118.745 kb on + strand at 118.745 kb on + strand at 118.746 kb on - strand at 118.746 kb on - strand at 118.746 kb on - strand at 119.643 kb on - strand, within GFF2342 at 119.643 kb on - strand, within GFF2342 at 119.643 kb on - strand, within GFF2342 at 119.687 kb on + strand at 119.687 kb on + strand at 119.687 kb on + strand at 119.687 kb on + strand at 119.780 kb on + strand at 119.780 kb on + strand at 119.780 kb on + strand at 119.781 kb on - strand at 119.781 kb on - strand at 119.782 kb on + strand at 119.782 kb on + strand at 119.782 kb on + strand at 119.782 kb on + strand at 119.782 kb on + strand at 119.782 kb on + strand at 119.782 kb on + strand at 119.782 kb on + strand at 119.783 kb on - strand at 119.783 kb on - strand at 119.783 kb on - strand at 119.783 kb on - strand at 119.783 kb on - strand at 119.783 kb on - strand at 119.783 kb on - strand at 119.818 kb on - strand at 119.993 kb on + strand, within GFF2343 at 119.993 kb on + strand, within GFF2343 at 119.994 kb on - strand, within GFF2343 at 119.994 kb on - strand, within GFF2343 at 119.994 kb on - strand, within GFF2343 at 120.119 kb on - strand, within GFF2343 at 120.164 kb on + strand, within GFF2343 at 120.415 kb on + strand, within GFF2343 at 120.415 kb on + strand, within GFF2343 at 120.421 kb on + strand, within GFF2343 at 120.422 kb on - strand, within GFF2343
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane remove 117,995 - -0.5 118,090 + -0.3 118,091 - +0.5 118,151 - -0.5 118,151 - +0.5 118,274 + -1.4 118,274 + +0.4 118,274 + -0.2 118,274 + +1.3 118,275 - +0.1 118,275 - -0.3 118,592 + +0.2 118,592 + -0.9 118,592 + -0.2 118,593 - -0.1 118,593 - +0.4 118,612 - -1.4 118,612 - +0.4 118,646 - -0.6 118,663 + +1.4 118,664 - -0.1 118,664 - -0.8 118,691 + -0.7 118,691 + -1.0 118,691 + -0.2 118,741 + -0.9 118,745 + +0.6 118,745 + -0.3 118,745 + -0.6 118,746 - -0.6 118,746 - +1.1 118,746 - -0.3 119,643 - GFF2342 0.88 -0.3 119,643 - GFF2342 0.88 -0.1 119,643 - GFF2342 0.88 -0.7 119,687 + +0.2 119,687 + -0.1 119,687 + -0.6 119,687 + +0.2 119,780 + -2.2 119,780 + +1.0 119,780 + +0.5 119,781 - -0.6 119,781 - +0.6 119,782 + -1.0 119,782 + +0.4 119,782 + -1.0 119,782 + +0.2 119,782 + -0.3 119,782 + +0.6 119,782 + -0.1 119,782 + -0.9 119,783 - +0.3 119,783 - -0.0 119,783 - -0.3 119,783 - +0.3 119,783 - -0.6 119,783 - -0.1 119,783 - +0.8 119,818 - +0.0 119,993 + GFF2343 0.13 -0.6 119,993 + GFF2343 0.13 +0.9 119,994 - GFF2343 0.13 +1.0 119,994 - GFF2343 0.13 -0.8 119,994 - GFF2343 0.13 -0.7 120,119 - GFF2343 0.33 -0.9 120,164 + GFF2343 0.41 +0.1 120,415 + GFF2343 0.82 +0.8 120,415 + GFF2343 0.82 -0.5 120,421 + GFF2343 0.83 +1.6 120,422 - GFF2343 0.83 +0.3
Or see this region's nucleotide sequence