Experiment: Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1738 and GFF1739 are separated by 170 nucleotides GFF1739 and GFF1740 are separated by 214 nucleotides GFF1740 and GFF1741 are separated by 0 nucleotides
GFF1738 - NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic, at 526,242 to 529,160
GFF1738
GFF1739 - hypothetical protein, at 529,331 to 530,263
GFF1739
GFF1740 - hypothetical protein, at 530,478 to 530,915
GFF1740
GFF1741 - hypothetical protein, at 530,916 to 532,319
GFF1741
Position (kb) 529
530
531 Strain fitness (log2 ratio) -2
-1
0
1
2 at 528.346 kb on + strand, within GFF1738 at 528.346 kb on + strand, within GFF1738 at 528.347 kb on - strand, within GFF1738 at 528.347 kb on - strand, within GFF1738 at 528.347 kb on - strand, within GFF1738 at 528.347 kb on - strand, within GFF1738 at 528.433 kb on + strand, within GFF1738 at 528.434 kb on - strand, within GFF1738 at 528.434 kb on - strand, within GFF1738 at 528.544 kb on + strand, within GFF1738 at 528.598 kb on + strand, within GFF1738 at 528.598 kb on + strand, within GFF1738 at 528.598 kb on + strand, within GFF1738 at 528.599 kb on - strand, within GFF1738 at 528.599 kb on - strand, within GFF1738 at 528.645 kb on + strand, within GFF1738 at 528.645 kb on + strand, within GFF1738 at 528.646 kb on - strand, within GFF1738 at 528.646 kb on - strand, within GFF1738 at 528.646 kb on - strand, within GFF1738 at 528.677 kb on + strand, within GFF1738 at 528.677 kb on + strand, within GFF1738 at 528.677 kb on + strand, within GFF1738 at 528.677 kb on + strand, within GFF1738 at 528.677 kb on + strand, within GFF1738 at 528.677 kb on + strand, within GFF1738 at 528.678 kb on - strand, within GFF1738 at 528.678 kb on - strand, within GFF1738 at 528.679 kb on + strand, within GFF1738 at 528.679 kb on + strand, within GFF1738 at 528.679 kb on + strand, within GFF1738 at 528.679 kb on + strand, within GFF1738 at 528.679 kb on + strand, within GFF1738 at 528.679 kb on + strand, within GFF1738 at 528.679 kb on + strand, within GFF1738 at 528.679 kb on + strand, within GFF1738 at 528.679 kb on + strand, within GFF1738 at 528.679 kb on + strand, within GFF1738 at 528.679 kb on + strand, within GFF1738 at 528.679 kb on + strand, within GFF1738 at 528.679 kb on + strand, within GFF1738 at 528.679 kb on + strand, within GFF1738 at 528.679 kb on + strand, within GFF1738 at 528.680 kb on - strand, within GFF1738 at 528.680 kb on - strand, within GFF1738 at 528.680 kb on - strand, within GFF1738 at 528.680 kb on - strand, within GFF1738 at 528.680 kb on - strand, within GFF1738 at 528.680 kb on - strand, within GFF1738 at 528.680 kb on - strand, within GFF1738 at 528.680 kb on - strand, within GFF1738 at 528.680 kb on - strand, within GFF1738 at 528.680 kb on - strand, within GFF1738 at 528.680 kb on - strand, within GFF1738 at 528.680 kb on - strand, within GFF1738 at 528.680 kb on - strand, within GFF1738 at 528.680 kb on - strand, within GFF1738 at 528.680 kb on - strand, within GFF1738 at 528.865 kb on + strand, within GFF1738 at 528.865 kb on + strand, within GFF1738 at 528.865 kb on + strand, within GFF1738 at 528.865 kb on + strand, within GFF1738 at 528.865 kb on + strand, within GFF1738 at 528.865 kb on + strand, within GFF1738 at 528.865 kb on + strand, within GFF1738 at 528.866 kb on - strand, within GFF1738 at 528.866 kb on - strand, within GFF1738 at 528.866 kb on - strand, within GFF1738 at 528.866 kb on - strand, within GFF1738 at 528.866 kb on - strand, within GFF1738 at 528.866 kb on - strand, within GFF1738 at 528.866 kb on - strand, within GFF1738 at 528.877 kb on + strand at 528.877 kb on + strand at 528.878 kb on - strand at 528.878 kb on - strand at 528.879 kb on + strand at 528.879 kb on + strand at 528.879 kb on + strand at 528.880 kb on - strand at 528.880 kb on - strand at 528.880 kb on - strand at 528.880 kb on - strand at 528.880 kb on - strand at 528.880 kb on - strand at 528.880 kb on - strand at 528.880 kb on - strand at 528.880 kb on - strand at 528.893 kb on + strand at 528.893 kb on + strand at 528.894 kb on - strand at 529.021 kb on + strand at 529.143 kb on + strand at 529.144 kb on - strand at 529.160 kb on + strand at 529.160 kb on + strand at 529.160 kb on + strand at 529.161 kb on - strand at 529.161 kb on - strand at 529.161 kb on - strand at 529.169 kb on - strand at 529.169 kb on - strand at 529.195 kb on + strand at 529.195 kb on + strand at 529.195 kb on + strand at 529.196 kb on - strand at 529.196 kb on - strand at 529.249 kb on + strand at 529.249 kb on + strand at 529.249 kb on + strand at 529.249 kb on + strand at 529.250 kb on - strand at 529.403 kb on - strand at 529.506 kb on + strand, within GFF1739 at 529.506 kb on + strand, within GFF1739 at 529.506 kb on + strand, within GFF1739 at 529.507 kb on - strand, within GFF1739 at 529.650 kb on - strand, within GFF1739 at 529.650 kb on - strand, within GFF1739 at 529.864 kb on + strand, within GFF1739 at 529.929 kb on + strand, within GFF1739 at 529.929 kb on + strand, within GFF1739 at 529.929 kb on + strand, within GFF1739 at 529.929 kb on + strand, within GFF1739 at 529.929 kb on + strand, within GFF1739 at 529.930 kb on - strand, within GFF1739 at 529.996 kb on - strand, within GFF1739 at 530.281 kb on + strand at 530.281 kb on + strand at 530.281 kb on + strand at 530.281 kb on + strand at 530.282 kb on - strand at 530.282 kb on - strand at 530.282 kb on - strand at 530.282 kb on - strand at 530.319 kb on + strand at 530.319 kb on + strand at 530.319 kb on + strand at 530.320 kb on - strand at 530.348 kb on + strand at 530.349 kb on - strand at 530.351 kb on - strand at 530.351 kb on - strand at 530.486 kb on - strand at 530.653 kb on + strand, within GFF1740 at 530.653 kb on + strand, within GFF1740 at 530.653 kb on + strand, within GFF1740 at 530.654 kb on - strand, within GFF1740 at 530.654 kb on - strand, within GFF1740 at 530.722 kb on - strand, within GFF1740 at 530.763 kb on + strand, within GFF1740 at 530.764 kb on - strand, within GFF1740 at 530.767 kb on + strand, within GFF1740 at 530.768 kb on - strand, within GFF1740 at 530.819 kb on + strand, within GFF1740 at 530.820 kb on - strand, within GFF1740 at 530.820 kb on - strand, within GFF1740 at 530.820 kb on - strand, within GFF1740 at 530.862 kb on + strand, within GFF1740 at 530.900 kb on + strand at 530.900 kb on + strand at 530.900 kb on + strand at 530.901 kb on - strand at 530.987 kb on - strand at 531.054 kb on + strand at 531.055 kb on - strand at 531.055 kb on - strand at 531.077 kb on + strand, within GFF1741 at 531.077 kb on + strand, within GFF1741 at 531.077 kb on + strand, within GFF1741 at 531.077 kb on + strand, within GFF1741 at 531.077 kb on + strand, within GFF1741 at 531.077 kb on + strand, within GFF1741 at 531.077 kb on + strand, within GFF1741 at 531.077 kb on + strand, within GFF1741 at 531.077 kb on + strand, within GFF1741 at 531.077 kb on + strand, within GFF1741 at 531.077 kb on + strand, within GFF1741 at 531.078 kb on - strand, within GFF1741 at 531.078 kb on - strand, within GFF1741 at 531.240 kb on + strand, within GFF1741 at 531.240 kb on + strand, within GFF1741 at 531.240 kb on + strand, within GFF1741 at 531.241 kb on - strand, within GFF1741 at 531.241 kb on - strand, within GFF1741
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane remove 528,346 + GFF1738 0.72 +1.9 528,346 + GFF1738 0.72 +0.1 528,347 - GFF1738 0.72 +0.2 528,347 - GFF1738 0.72 -0.3 528,347 - GFF1738 0.72 -0.2 528,347 - GFF1738 0.72 -0.3 528,433 + GFF1738 0.75 -0.7 528,434 - GFF1738 0.75 -0.8 528,434 - GFF1738 0.75 +1.1 528,544 + GFF1738 0.79 -0.3 528,598 + GFF1738 0.81 -0.3 528,598 + GFF1738 0.81 +0.8 528,598 + GFF1738 0.81 +0.1 528,599 - GFF1738 0.81 -0.2 528,599 - GFF1738 0.81 +0.3 528,645 + GFF1738 0.82 +0.4 528,645 + GFF1738 0.82 -0.4 528,646 - GFF1738 0.82 +0.7 528,646 - GFF1738 0.82 +0.3 528,646 - GFF1738 0.82 -0.3 528,677 + GFF1738 0.83 +0.1 528,677 + GFF1738 0.83 -0.6 528,677 + GFF1738 0.83 -0.3 528,677 + GFF1738 0.83 +0.6 528,677 + GFF1738 0.83 -0.8 528,677 + GFF1738 0.83 +0.3 528,678 - GFF1738 0.83 -0.8 528,678 - GFF1738 0.83 +0.7 528,679 + GFF1738 0.83 -0.8 528,679 + GFF1738 0.83 +0.2 528,679 + GFF1738 0.83 +0.6 528,679 + GFF1738 0.83 +0.9 528,679 + GFF1738 0.83 +1.5 528,679 + GFF1738 0.83 +0.5 528,679 + GFF1738 0.83 -0.1 528,679 + GFF1738 0.83 -0.2 528,679 + GFF1738 0.83 +0.4 528,679 + GFF1738 0.83 -0.8 528,679 + GFF1738 0.83 -2.1 528,679 + GFF1738 0.83 -1.3 528,679 + GFF1738 0.83 +1.8 528,679 + GFF1738 0.83 -0.8 528,679 + GFF1738 0.83 +1.2 528,680 - GFF1738 0.84 +0.7 528,680 - GFF1738 0.84 +1.0 528,680 - GFF1738 0.84 +0.1 528,680 - GFF1738 0.84 -0.8 528,680 - GFF1738 0.84 +1.4 528,680 - GFF1738 0.84 -1.0 528,680 - GFF1738 0.84 -0.8 528,680 - GFF1738 0.84 +0.2 528,680 - GFF1738 0.84 +0.2 528,680 - GFF1738 0.84 -0.5 528,680 - GFF1738 0.84 -1.5 528,680 - GFF1738 0.84 -1.8 528,680 - GFF1738 0.84 +0.8 528,680 - GFF1738 0.84 -0.1 528,680 - GFF1738 0.84 +0.2 528,865 + GFF1738 0.90 +0.4 528,865 + GFF1738 0.90 +0.3 528,865 + GFF1738 0.90 -0.2 528,865 + GFF1738 0.90 -0.1 528,865 + GFF1738 0.90 +0.5 528,865 + GFF1738 0.90 -0.8 528,865 + GFF1738 0.90 -0.5 528,866 - GFF1738 0.90 -0.1 528,866 - GFF1738 0.90 -0.6 528,866 - GFF1738 0.90 +0.0 528,866 - GFF1738 0.90 -0.6 528,866 - GFF1738 0.90 -0.7 528,866 - GFF1738 0.90 -0.3 528,866 - GFF1738 0.90 -0.5 528,877 + -0.9 528,877 + +0.4 528,878 - -0.8 528,878 - -1.1 528,879 + -0.5 528,879 + +0.8 528,879 + +0.2 528,880 - +0.8 528,880 - -0.0 528,880 - +0.1 528,880 - +0.3 528,880 - -0.2 528,880 - +1.0 528,880 - -0.4 528,880 - +0.2 528,880 - -0.3 528,893 + -1.2 528,893 + -0.4 528,894 - -0.5 529,021 + -0.4 529,143 + -0.4 529,144 - +0.3 529,160 + -1.5 529,160 + -1.6 529,160 + -0.8 529,161 - +0.9 529,161 - -0.5 529,161 - -1.1 529,169 - -0.3 529,169 - -0.4 529,195 + -0.3 529,195 + -0.7 529,195 + -0.5 529,196 - -0.5 529,196 - +1.7 529,249 + -0.1 529,249 + +0.1 529,249 + -0.6 529,249 + -0.2 529,250 - +0.8 529,403 - +1.6 529,506 + GFF1739 0.19 -0.5 529,506 + GFF1739 0.19 +0.7 529,506 + GFF1739 0.19 -0.3 529,507 - GFF1739 0.19 -0.4 529,650 - GFF1739 0.34 +0.4 529,650 - GFF1739 0.34 -0.3 529,864 + GFF1739 0.57 -0.3 529,929 + GFF1739 0.64 +0.3 529,929 + GFF1739 0.64 -0.0 529,929 + GFF1739 0.64 -0.3 529,929 + GFF1739 0.64 -0.2 529,929 + GFF1739 0.64 +0.5 529,930 - GFF1739 0.64 -0.9 529,996 - GFF1739 0.71 -0.3 530,281 + -0.8 530,281 + +0.5 530,281 + +0.4 530,281 + +1.2 530,282 - -0.9 530,282 - -0.7 530,282 - -0.5 530,282 - -0.8 530,319 + -0.8 530,319 + +0.5 530,319 + -0.6 530,320 - +0.2 530,348 + -1.6 530,349 - +1.1 530,351 - -0.8 530,351 - +0.1 530,486 - +0.0 530,653 + GFF1740 0.40 -0.8 530,653 + GFF1740 0.40 -1.1 530,653 + GFF1740 0.40 -0.6 530,654 - GFF1740 0.40 -0.1 530,654 - GFF1740 0.40 -0.1 530,722 - GFF1740 0.56 -0.3 530,763 + GFF1740 0.65 +0.5 530,764 - GFF1740 0.65 -0.2 530,767 + GFF1740 0.66 -0.1 530,768 - GFF1740 0.66 +0.5 530,819 + GFF1740 0.78 -0.8 530,820 - GFF1740 0.78 +0.1 530,820 - GFF1740 0.78 -0.1 530,820 - GFF1740 0.78 -1.1 530,862 + GFF1740 0.88 -1.5 530,900 + +0.7 530,900 + -0.1 530,900 + +1.2 530,901 - +0.1 530,987 - -0.8 531,054 + +0.2 531,055 - +0.8 531,055 - -1.5 531,077 + GFF1741 0.11 -1.1 531,077 + GFF1741 0.11 +0.8 531,077 + GFF1741 0.11 +0.0 531,077 + GFF1741 0.11 +0.2 531,077 + GFF1741 0.11 +0.1 531,077 + GFF1741 0.11 +0.2 531,077 + GFF1741 0.11 -1.3 531,077 + GFF1741 0.11 +0.2 531,077 + GFF1741 0.11 -0.4 531,077 + GFF1741 0.11 +0.1 531,077 + GFF1741 0.11 +0.2 531,078 - GFF1741 0.12 -0.1 531,078 - GFF1741 0.12 -0.3 531,240 + GFF1741 0.23 -0.1 531,240 + GFF1741 0.23 +0.8 531,240 + GFF1741 0.23 +0.8 531,241 - GFF1741 0.23 -0.1 531,241 - GFF1741 0.23 +0.4
Or see this region's nucleotide sequence