Experiment: Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1736 and GFF1737 overlap by 4 nucleotides GFF1737 and GFF1738 overlap by 1 nucleotides
GFF1736 - Na(+)/H(+) antiporter subunit D, at 524,222 to 525,901
GFF1736
GFF1737 - Na(+)/H(+) antiporter subunit C1, at 525,898 to 526,242
GFF1737
GFF1738 - NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic, at 526,242 to 529,160
GFF1738
Position (kb) 525
526
527 Strain fitness (log2 ratio) -2
-1
0
1 at 524.999 kb on - strand, within GFF1736 at 525.039 kb on + strand, within GFF1736 at 525.120 kb on + strand, within GFF1736 at 525.120 kb on + strand, within GFF1736 at 525.120 kb on + strand, within GFF1736 at 525.120 kb on + strand, within GFF1736 at 525.120 kb on + strand, within GFF1736 at 525.120 kb on + strand, within GFF1736 at 525.121 kb on - strand, within GFF1736 at 525.121 kb on - strand, within GFF1736 at 525.121 kb on - strand, within GFF1736 at 525.180 kb on + strand, within GFF1736 at 525.180 kb on + strand, within GFF1736 at 525.181 kb on - strand, within GFF1736 at 525.181 kb on - strand, within GFF1736 at 525.242 kb on + strand, within GFF1736 at 525.242 kb on + strand, within GFF1736 at 525.243 kb on - strand, within GFF1736 at 525.342 kb on + strand, within GFF1736 at 525.342 kb on + strand, within GFF1736 at 525.342 kb on + strand, within GFF1736 at 525.343 kb on - strand, within GFF1736 at 525.343 kb on - strand, within GFF1736 at 525.399 kb on + strand, within GFF1736 at 525.399 kb on + strand, within GFF1736 at 525.399 kb on + strand, within GFF1736 at 525.446 kb on + strand, within GFF1736 at 525.446 kb on + strand, within GFF1736 at 525.446 kb on + strand, within GFF1736 at 525.447 kb on - strand, within GFF1736 at 525.453 kb on + strand, within GFF1736 at 525.453 kb on + strand, within GFF1736 at 525.454 kb on - strand, within GFF1736 at 525.522 kb on + strand, within GFF1736 at 525.522 kb on + strand, within GFF1736 at 525.523 kb on - strand, within GFF1736 at 525.702 kb on + strand, within GFF1736 at 525.703 kb on - strand, within GFF1736 at 525.961 kb on + strand, within GFF1737 at 525.962 kb on - strand, within GFF1737 at 526.040 kb on + strand, within GFF1737 at 526.041 kb on - strand, within GFF1737 at 526.041 kb on - strand, within GFF1737 at 526.041 kb on - strand, within GFF1737 at 526.041 kb on - strand, within GFF1737 at 526.041 kb on - strand, within GFF1737 at 526.133 kb on + strand, within GFF1737 at 526.133 kb on + strand, within GFF1737 at 526.134 kb on - strand, within GFF1737 at 526.357 kb on + strand at 526.357 kb on + strand at 526.357 kb on + strand at 526.357 kb on + strand at 526.392 kb on - strand at 526.392 kb on - strand at 526.567 kb on + strand, within GFF1738 at 526.567 kb on + strand, within GFF1738 at 526.567 kb on + strand, within GFF1738 at 526.567 kb on + strand, within GFF1738 at 526.567 kb on + strand, within GFF1738 at 526.567 kb on + strand, within GFF1738 at 526.567 kb on + strand, within GFF1738 at 526.567 kb on + strand, within GFF1738 at 526.568 kb on - strand, within GFF1738 at 526.568 kb on - strand, within GFF1738 at 526.568 kb on - strand, within GFF1738 at 526.568 kb on - strand, within GFF1738 at 526.568 kb on - strand, within GFF1738 at 526.568 kb on - strand, within GFF1738 at 526.568 kb on - strand, within GFF1738 at 526.568 kb on - strand, within GFF1738 at 526.568 kb on - strand, within GFF1738 at 526.578 kb on - strand, within GFF1738 at 526.842 kb on + strand, within GFF1738 at 526.963 kb on + strand, within GFF1738 at 526.963 kb on + strand, within GFF1738 at 526.963 kb on + strand, within GFF1738 at 526.964 kb on - strand, within GFF1738 at 526.964 kb on - strand, within GFF1738 at 526.964 kb on - strand, within GFF1738 at 527.073 kb on - strand, within GFF1738 at 527.118 kb on - strand, within GFF1738
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane remove 524,999 - GFF1736 0.46 -0.4 525,039 + GFF1736 0.49 -0.4 525,120 + GFF1736 0.53 -1.1 525,120 + GFF1736 0.53 -0.2 525,120 + GFF1736 0.53 -0.3 525,120 + GFF1736 0.53 +0.1 525,120 + GFF1736 0.53 -0.3 525,120 + GFF1736 0.53 +0.4 525,121 - GFF1736 0.54 -0.3 525,121 - GFF1736 0.54 -0.0 525,121 - GFF1736 0.54 -0.2 525,180 + GFF1736 0.57 +0.1 525,180 + GFF1736 0.57 -0.5 525,181 - GFF1736 0.57 -0.1 525,181 - GFF1736 0.57 -2.2 525,242 + GFF1736 0.61 +0.2 525,242 + GFF1736 0.61 -0.1 525,243 - GFF1736 0.61 -0.8 525,342 + GFF1736 0.67 +0.4 525,342 + GFF1736 0.67 -0.0 525,342 + GFF1736 0.67 +0.9 525,343 - GFF1736 0.67 -1.1 525,343 - GFF1736 0.67 -0.2 525,399 + GFF1736 0.70 -0.4 525,399 + GFF1736 0.70 +0.5 525,399 + GFF1736 0.70 -0.0 525,446 + GFF1736 0.73 +0.4 525,446 + GFF1736 0.73 +0.4 525,446 + GFF1736 0.73 +0.9 525,447 - GFF1736 0.73 -0.8 525,453 + GFF1736 0.73 +0.5 525,453 + GFF1736 0.73 -0.5 525,454 - GFF1736 0.73 -0.3 525,522 + GFF1736 0.77 -0.6 525,522 + GFF1736 0.77 +0.1 525,523 - GFF1736 0.77 -0.3 525,702 + GFF1736 0.88 +0.2 525,703 - GFF1736 0.88 -1.8 525,961 + GFF1737 0.18 +0.5 525,962 - GFF1737 0.19 +0.6 526,040 + GFF1737 0.41 +0.6 526,041 - GFF1737 0.41 +0.6 526,041 - GFF1737 0.41 -0.1 526,041 - GFF1737 0.41 -0.3 526,041 - GFF1737 0.41 +0.9 526,041 - GFF1737 0.41 -1.0 526,133 + GFF1737 0.68 -1.1 526,133 + GFF1737 0.68 +0.6 526,134 - GFF1737 0.68 +0.2 526,357 + +0.8 526,357 + -0.6 526,357 + -0.2 526,357 + -0.6 526,392 - -0.8 526,392 - +0.1 526,567 + GFF1738 0.11 -0.2 526,567 + GFF1738 0.11 +0.3 526,567 + GFF1738 0.11 +0.2 526,567 + GFF1738 0.11 +0.0 526,567 + GFF1738 0.11 +0.0 526,567 + GFF1738 0.11 +0.2 526,567 + GFF1738 0.11 +0.2 526,567 + GFF1738 0.11 -0.8 526,568 - GFF1738 0.11 -0.6 526,568 - GFF1738 0.11 +1.2 526,568 - GFF1738 0.11 -0.1 526,568 - GFF1738 0.11 +0.5 526,568 - GFF1738 0.11 -0.3 526,568 - GFF1738 0.11 -0.5 526,568 - GFF1738 0.11 +0.2 526,568 - GFF1738 0.11 -0.4 526,568 - GFF1738 0.11 +0.2 526,578 - GFF1738 0.12 +1.0 526,842 + GFF1738 0.21 +0.3 526,963 + GFF1738 0.25 +0.2 526,963 + GFF1738 0.25 -0.9 526,963 + GFF1738 0.25 +0.7 526,964 - GFF1738 0.25 -0.3 526,964 - GFF1738 0.25 +0.7 526,964 - GFF1738 0.25 +0.8 527,073 - GFF1738 0.28 +0.4 527,118 - GFF1738 0.30 +0.1
Or see this region's nucleotide sequence