Experiment: Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1661 and GFF1662 are separated by 160 nucleotides GFF1662 and GFF1663 are separated by 4 nucleotides GFF1663 and GFF1664 are separated by 243 nucleotides
GFF1661 - hypothetical protein, at 450,191 to 450,505
GFF1661
GFF1662 - Inner membrane protein YjdF, at 450,666 to 451,319
GFF1662
GFF1663 - Superoxide dismutase [Cu-Zn], at 451,324 to 451,845
GFF1663
GFF1664 - hypothetical protein, at 452,089 to 453,702
GFF1664
Position (kb) 451
452 Strain fitness (log2 ratio) -2
-1
0
1 at 450.475 kb on + strand at 450.475 kb on + strand at 450.475 kb on + strand at 450.476 kb on - strand at 450.494 kb on + strand at 450.495 kb on - strand at 450.495 kb on - strand at 450.547 kb on + strand at 450.547 kb on + strand at 450.547 kb on + strand at 450.548 kb on - strand at 450.551 kb on + strand at 450.551 kb on + strand at 450.551 kb on + strand at 450.551 kb on + strand at 450.552 kb on - strand at 450.552 kb on - strand at 450.552 kb on - strand at 450.552 kb on - strand at 450.552 kb on - strand at 450.600 kb on + strand at 450.601 kb on - strand at 450.648 kb on - strand at 450.707 kb on + strand at 450.707 kb on + strand at 450.921 kb on + strand, within GFF1662 at 450.921 kb on + strand, within GFF1662 at 450.921 kb on + strand, within GFF1662 at 450.921 kb on + strand, within GFF1662 at 450.921 kb on + strand, within GFF1662 at 450.921 kb on + strand, within GFF1662 at 450.922 kb on - strand, within GFF1662 at 450.922 kb on - strand, within GFF1662 at 450.922 kb on - strand, within GFF1662 at 450.922 kb on - strand, within GFF1662 at 450.927 kb on + strand, within GFF1662 at 450.928 kb on - strand, within GFF1662 at 450.928 kb on - strand, within GFF1662 at 450.942 kb on + strand, within GFF1662 at 450.942 kb on + strand, within GFF1662 at 450.942 kb on + strand, within GFF1662 at 450.943 kb on - strand, within GFF1662 at 451.012 kb on - strand, within GFF1662 at 451.031 kb on + strand, within GFF1662 at 451.031 kb on + strand, within GFF1662 at 451.031 kb on + strand, within GFF1662 at 451.031 kb on + strand, within GFF1662 at 451.031 kb on + strand, within GFF1662 at 451.031 kb on + strand, within GFF1662 at 451.031 kb on + strand, within GFF1662 at 451.031 kb on + strand, within GFF1662 at 451.031 kb on + strand, within GFF1662 at 451.032 kb on - strand, within GFF1662 at 451.032 kb on - strand, within GFF1662 at 451.032 kb on - strand, within GFF1662 at 451.032 kb on - strand, within GFF1662 at 451.032 kb on - strand, within GFF1662 at 451.032 kb on - strand, within GFF1662 at 451.032 kb on - strand, within GFF1662 at 451.032 kb on - strand, within GFF1662 at 451.032 kb on - strand, within GFF1662 at 451.032 kb on - strand, within GFF1662 at 451.032 kb on - strand, within GFF1662 at 451.035 kb on + strand, within GFF1662 at 451.036 kb on - strand, within GFF1662 at 451.036 kb on - strand, within GFF1662 at 451.036 kb on - strand, within GFF1662 at 451.036 kb on - strand, within GFF1662 at 451.036 kb on - strand, within GFF1662 at 451.036 kb on - strand, within GFF1662 at 451.036 kb on - strand, within GFF1662 at 451.045 kb on + strand, within GFF1662 at 451.045 kb on + strand, within GFF1662 at 451.126 kb on + strand, within GFF1662 at 451.126 kb on + strand, within GFF1662 at 451.126 kb on + strand, within GFF1662 at 451.126 kb on + strand, within GFF1662 at 451.127 kb on - strand, within GFF1662 at 451.127 kb on - strand, within GFF1662 at 451.127 kb on - strand, within GFF1662 at 451.127 kb on - strand, within GFF1662 at 451.127 kb on - strand, within GFF1662 at 451.149 kb on + strand, within GFF1662 at 451.150 kb on - strand, within GFF1662 at 451.179 kb on + strand, within GFF1662 at 451.180 kb on - strand, within GFF1662 at 451.180 kb on - strand, within GFF1662 at 451.289 kb on - strand at 451.289 kb on - strand at 451.493 kb on + strand, within GFF1663 at 451.493 kb on + strand, within GFF1663 at 451.493 kb on + strand, within GFF1663 at 451.493 kb on + strand, within GFF1663 at 451.493 kb on + strand, within GFF1663 at 451.493 kb on + strand, within GFF1663 at 451.493 kb on + strand, within GFF1663 at 451.494 kb on - strand, within GFF1663 at 451.494 kb on - strand, within GFF1663 at 451.494 kb on - strand, within GFF1663 at 451.494 kb on - strand, within GFF1663 at 451.494 kb on - strand, within GFF1663 at 451.494 kb on - strand, within GFF1663 at 451.494 kb on - strand, within GFF1663 at 451.494 kb on - strand, within GFF1663 at 451.495 kb on + strand, within GFF1663 at 451.495 kb on + strand, within GFF1663 at 451.495 kb on + strand, within GFF1663 at 451.495 kb on + strand, within GFF1663 at 451.495 kb on - strand, within GFF1663 at 451.496 kb on - strand, within GFF1663 at 451.496 kb on - strand, within GFF1663 at 451.496 kb on - strand, within GFF1663 at 451.496 kb on - strand, within GFF1663 at 451.845 kb on + strand at 451.845 kb on + strand at 452.033 kb on + strand at 452.033 kb on + strand at 452.033 kb on + strand at 452.033 kb on + strand at 452.033 kb on + strand at 452.033 kb on + strand at 452.033 kb on + strand at 452.033 kb on + strand at 452.033 kb on + strand at 452.034 kb on - strand at 452.034 kb on - strand at 452.034 kb on - strand at 452.034 kb on - strand at 452.039 kb on + strand at 452.039 kb on + strand at 452.039 kb on + strand at 452.164 kb on + strand at 452.164 kb on + strand at 452.164 kb on + strand at 452.165 kb on - strand at 452.165 kb on - strand at 452.165 kb on - strand at 452.165 kb on - strand at 452.203 kb on - strand at 452.452 kb on + strand, within GFF1664 at 452.452 kb on + strand, within GFF1664 at 452.452 kb on + strand, within GFF1664 at 452.453 kb on - strand, within GFF1664 at 452.453 kb on - strand, within GFF1664 at 452.453 kb on - strand, within GFF1664 at 452.453 kb on - strand, within GFF1664 at 452.453 kb on - strand, within GFF1664 at 452.453 kb on - strand, within GFF1664 at 452.453 kb on - strand, within GFF1664 at 452.541 kb on + strand, within GFF1664 at 452.541 kb on + strand, within GFF1664
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane remove 450,475 + -0.7 450,475 + -0.8 450,475 + -1.1 450,476 - -0.5 450,494 + +0.4 450,495 - -1.0 450,495 - -0.9 450,547 + -0.0 450,547 + -0.0 450,547 + +0.1 450,548 - -1.1 450,551 + +0.2 450,551 + -0.3 450,551 + -0.3 450,551 + +0.1 450,552 - -0.1 450,552 - +0.0 450,552 - -1.1 450,552 - -0.9 450,552 - +0.4 450,600 + +0.2 450,601 - -1.2 450,648 - +1.4 450,707 + -0.1 450,707 + -0.6 450,921 + GFF1662 0.39 +0.3 450,921 + GFF1662 0.39 -0.5 450,921 + GFF1662 0.39 +0.2 450,921 + GFF1662 0.39 +0.3 450,921 + GFF1662 0.39 +0.2 450,921 + GFF1662 0.39 -0.4 450,922 - GFF1662 0.39 +0.8 450,922 - GFF1662 0.39 -0.2 450,922 - GFF1662 0.39 -0.1 450,922 - GFF1662 0.39 +0.1 450,927 + GFF1662 0.40 +0.9 450,928 - GFF1662 0.40 +0.3 450,928 - GFF1662 0.40 -0.3 450,942 + GFF1662 0.42 -1.5 450,942 + GFF1662 0.42 +0.8 450,942 + GFF1662 0.42 -2.6 450,943 - GFF1662 0.42 -1.3 451,012 - GFF1662 0.53 -1.1 451,031 + GFF1662 0.56 -0.0 451,031 + GFF1662 0.56 +0.5 451,031 + GFF1662 0.56 +0.2 451,031 + GFF1662 0.56 -0.7 451,031 + GFF1662 0.56 +0.6 451,031 + GFF1662 0.56 -0.9 451,031 + GFF1662 0.56 +0.4 451,031 + GFF1662 0.56 +0.7 451,031 + GFF1662 0.56 +0.3 451,032 - GFF1662 0.56 -0.8 451,032 - GFF1662 0.56 +0.7 451,032 - GFF1662 0.56 -0.6 451,032 - GFF1662 0.56 -0.4 451,032 - GFF1662 0.56 -0.6 451,032 - GFF1662 0.56 -0.7 451,032 - GFF1662 0.56 -0.8 451,032 - GFF1662 0.56 -0.0 451,032 - GFF1662 0.56 +0.1 451,032 - GFF1662 0.56 +0.2 451,032 - GFF1662 0.56 +0.9 451,035 + GFF1662 0.56 -1.2 451,036 - GFF1662 0.57 -0.5 451,036 - GFF1662 0.57 +0.2 451,036 - GFF1662 0.57 +0.3 451,036 - GFF1662 0.57 -0.8 451,036 - GFF1662 0.57 -1.3 451,036 - GFF1662 0.57 -0.8 451,036 - GFF1662 0.57 -1.1 451,045 + GFF1662 0.58 +0.1 451,045 + GFF1662 0.58 -1.0 451,126 + GFF1662 0.70 -0.2 451,126 + GFF1662 0.70 -0.2 451,126 + GFF1662 0.70 -1.5 451,126 + GFF1662 0.70 +0.6 451,127 - GFF1662 0.70 +0.1 451,127 - GFF1662 0.70 +0.2 451,127 - GFF1662 0.70 -0.3 451,127 - GFF1662 0.70 -0.3 451,127 - GFF1662 0.70 +1.6 451,149 + GFF1662 0.74 +0.9 451,150 - GFF1662 0.74 +0.6 451,179 + GFF1662 0.78 -0.5 451,180 - GFF1662 0.79 -0.9 451,180 - GFF1662 0.79 +1.1 451,289 - -0.7 451,289 - -0.6 451,493 + GFF1663 0.32 +0.2 451,493 + GFF1663 0.32 -0.1 451,493 + GFF1663 0.32 -1.2 451,493 + GFF1663 0.32 -0.2 451,493 + GFF1663 0.32 -0.6 451,493 + GFF1663 0.32 -0.1 451,493 + GFF1663 0.32 -0.3 451,494 - GFF1663 0.33 +0.2 451,494 - GFF1663 0.33 +0.1 451,494 - GFF1663 0.33 -0.8 451,494 - GFF1663 0.33 -1.5 451,494 - GFF1663 0.33 +0.2 451,494 - GFF1663 0.33 -0.1 451,494 - GFF1663 0.33 +1.1 451,494 - GFF1663 0.33 +0.1 451,495 + GFF1663 0.33 -0.6 451,495 + GFF1663 0.33 -0.5 451,495 + GFF1663 0.33 -1.8 451,495 + GFF1663 0.33 -1.2 451,495 - GFF1663 0.33 +0.6 451,496 - GFF1663 0.33 +0.6 451,496 - GFF1663 0.33 -0.0 451,496 - GFF1663 0.33 -0.7 451,496 - GFF1663 0.33 -1.2 451,845 + +0.2 451,845 + +0.2 452,033 + +0.0 452,033 + -1.7 452,033 + +0.8 452,033 + +0.2 452,033 + +0.4 452,033 + +0.6 452,033 + -0.6 452,033 + -0.7 452,033 + -0.6 452,034 - +0.5 452,034 - +0.1 452,034 - +0.3 452,034 - -0.2 452,039 + +0.9 452,039 + +1.5 452,039 + +0.5 452,164 + -0.0 452,164 + -0.0 452,164 + +0.0 452,165 - -0.3 452,165 - -0.2 452,165 - +1.2 452,165 - -0.2 452,203 - +0.3 452,452 + GFF1664 0.22 +0.2 452,452 + GFF1664 0.22 +0.0 452,452 + GFF1664 0.22 -0.6 452,453 - GFF1664 0.23 -0.4 452,453 - GFF1664 0.23 -1.7 452,453 - GFF1664 0.23 +0.8 452,453 - GFF1664 0.23 -0.9 452,453 - GFF1664 0.23 -1.1 452,453 - GFF1664 0.23 +1.1 452,453 - GFF1664 0.23 -0.2 452,541 + GFF1664 0.28 +0.3 452,541 + GFF1664 0.28 +0.8
Or see this region's nucleotide sequence