Experiment: Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1648 and GFF1649 are separated by 129 nucleotides GFF1649 and GFF1650 are separated by 54 nucleotides
GFF1648 - hypothetical protein, at 434,456 to 437,674
GFF1648
GFF1649 - NAD-dependent protein deacetylase, at 437,804 to 438,646
GFF1649
GFF1650 - hypothetical protein, at 438,701 to 439,747
GFF1650
Position (kb) 437
438
439 Strain fitness (log2 ratio) -1
0
1
2 at 436.814 kb on + strand, within GFF1648 at 436.814 kb on + strand, within GFF1648 at 436.814 kb on + strand, within GFF1648 at 436.814 kb on + strand, within GFF1648 at 436.814 kb on + strand, within GFF1648 at 436.814 kb on + strand, within GFF1648 at 436.815 kb on - strand, within GFF1648 at 436.815 kb on - strand, within GFF1648 at 436.815 kb on - strand, within GFF1648 at 436.815 kb on - strand, within GFF1648 at 436.815 kb on - strand, within GFF1648 at 436.815 kb on - strand, within GFF1648 at 436.815 kb on - strand, within GFF1648 at 436.944 kb on - strand, within GFF1648 at 436.944 kb on - strand, within GFF1648 at 436.944 kb on - strand, within GFF1648 at 436.959 kb on + strand, within GFF1648 at 436.989 kb on + strand, within GFF1648 at 436.990 kb on - strand, within GFF1648 at 437.093 kb on + strand, within GFF1648 at 437.093 kb on + strand, within GFF1648 at 437.093 kb on + strand, within GFF1648 at 437.143 kb on + strand, within GFF1648 at 437.160 kb on + strand, within GFF1648 at 437.161 kb on - strand, within GFF1648 at 437.161 kb on - strand, within GFF1648 at 437.183 kb on + strand, within GFF1648 at 437.183 kb on + strand, within GFF1648 at 437.183 kb on + strand, within GFF1648 at 437.183 kb on + strand, within GFF1648 at 437.184 kb on - strand, within GFF1648 at 437.184 kb on - strand, within GFF1648 at 437.184 kb on - strand, within GFF1648 at 437.184 kb on - strand, within GFF1648 at 437.184 kb on - strand, within GFF1648 at 437.184 kb on - strand, within GFF1648 at 437.184 kb on - strand, within GFF1648 at 437.184 kb on - strand, within GFF1648 at 437.184 kb on - strand, within GFF1648 at 437.189 kb on + strand, within GFF1648 at 437.190 kb on - strand, within GFF1648 at 437.253 kb on + strand, within GFF1648 at 437.254 kb on - strand, within GFF1648 at 437.335 kb on - strand, within GFF1648 at 437.436 kb on + strand at 437.437 kb on - strand at 437.455 kb on + strand at 437.464 kb on + strand at 437.478 kb on - strand at 437.531 kb on - strand at 437.535 kb on - strand at 437.535 kb on - strand at 437.619 kb on + strand at 437.619 kb on + strand at 437.667 kb on + strand at 437.672 kb on + strand at 437.672 kb on + strand at 437.673 kb on - strand at 437.673 kb on - strand at 437.673 kb on - strand at 437.742 kb on + strand at 437.742 kb on + strand at 437.743 kb on - strand at 437.743 kb on - strand at 437.746 kb on + strand at 437.746 kb on + strand at 437.746 kb on + strand at 437.746 kb on + strand at 437.746 kb on + strand at 437.747 kb on - strand at 437.747 kb on - strand at 437.747 kb on - strand at 437.747 kb on - strand at 437.747 kb on - strand at 437.747 kb on - strand at 437.752 kb on + strand at 437.752 kb on + strand at 437.752 kb on + strand at 437.753 kb on - strand at 437.753 kb on - strand at 437.961 kb on + strand, within GFF1649 at 437.961 kb on + strand, within GFF1649 at 438.148 kb on + strand, within GFF1649 at 438.148 kb on + strand, within GFF1649 at 438.148 kb on + strand, within GFF1649 at 438.149 kb on - strand, within GFF1649 at 438.189 kb on + strand, within GFF1649 at 438.322 kb on + strand, within GFF1649 at 438.486 kb on + strand, within GFF1649 at 438.486 kb on + strand, within GFF1649 at 438.486 kb on + strand, within GFF1649 at 438.487 kb on - strand, within GFF1649 at 438.487 kb on - strand, within GFF1649 at 438.576 kb on - strand at 438.681 kb on + strand at 438.681 kb on + strand at 438.702 kb on + strand at 438.702 kb on + strand at 438.702 kb on + strand at 438.702 kb on + strand at 438.859 kb on + strand, within GFF1650 at 438.859 kb on + strand, within GFF1650 at 438.860 kb on - strand, within GFF1650 at 438.877 kb on - strand, within GFF1650 at 438.972 kb on + strand, within GFF1650 at 438.972 kb on + strand, within GFF1650 at 438.972 kb on + strand, within GFF1650 at 438.973 kb on - strand, within GFF1650 at 438.973 kb on - strand, within GFF1650 at 438.973 kb on - strand, within GFF1650 at 438.973 kb on - strand, within GFF1650 at 438.973 kb on - strand, within GFF1650 at 438.973 kb on - strand, within GFF1650 at 439.456 kb on - strand, within GFF1650 at 439.456 kb on - strand, within GFF1650 at 439.456 kb on - strand, within GFF1650 at 439.456 kb on - strand, within GFF1650 at 439.531 kb on + strand, within GFF1650 at 439.532 kb on - strand, within GFF1650 at 439.532 kb on - strand, within GFF1650 at 439.533 kb on + strand, within GFF1650 at 439.533 kb on + strand, within GFF1650 at 439.534 kb on - strand, within GFF1650 at 439.534 kb on - strand, within GFF1650 at 439.534 kb on - strand, within GFF1650
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture; Methylosinus sp. DMC45 1:1 with Pseudomonas_DMC3_ML3; dNMS with methane remove 436,814 + GFF1648 0.73 +0.5 436,814 + GFF1648 0.73 +0.5 436,814 + GFF1648 0.73 +0.9 436,814 + GFF1648 0.73 -0.5 436,814 + GFF1648 0.73 +0.2 436,814 + GFF1648 0.73 +0.9 436,815 - GFF1648 0.73 +0.6 436,815 - GFF1648 0.73 -0.3 436,815 - GFF1648 0.73 +0.1 436,815 - GFF1648 0.73 +0.0 436,815 - GFF1648 0.73 -0.6 436,815 - GFF1648 0.73 -0.3 436,815 - GFF1648 0.73 -1.1 436,944 - GFF1648 0.77 +0.9 436,944 - GFF1648 0.77 -0.5 436,944 - GFF1648 0.77 +1.0 436,959 + GFF1648 0.78 +0.5 436,989 + GFF1648 0.79 -0.3 436,990 - GFF1648 0.79 +0.7 437,093 + GFF1648 0.82 -0.4 437,093 + GFF1648 0.82 +1.0 437,093 + GFF1648 0.82 +0.4 437,143 + GFF1648 0.83 +0.2 437,160 + GFF1648 0.84 +0.4 437,161 - GFF1648 0.84 -0.3 437,161 - GFF1648 0.84 -0.4 437,183 + GFF1648 0.85 +1.6 437,183 + GFF1648 0.85 -1.3 437,183 + GFF1648 0.85 -1.2 437,183 + GFF1648 0.85 +0.6 437,184 - GFF1648 0.85 -0.5 437,184 - GFF1648 0.85 -0.2 437,184 - GFF1648 0.85 -0.2 437,184 - GFF1648 0.85 -0.3 437,184 - GFF1648 0.85 -0.6 437,184 - GFF1648 0.85 -1.3 437,184 - GFF1648 0.85 +0.8 437,184 - GFF1648 0.85 +1.5 437,184 - GFF1648 0.85 +0.8 437,189 + GFF1648 0.85 -1.6 437,190 - GFF1648 0.85 -0.2 437,253 + GFF1648 0.87 +0.9 437,254 - GFF1648 0.87 +0.2 437,335 - GFF1648 0.89 +1.1 437,436 + -0.2 437,437 - +0.4 437,455 + +0.2 437,464 + -0.3 437,478 - -0.8 437,531 - -0.5 437,535 - +1.2 437,535 - +0.4 437,619 + +0.8 437,619 + +1.0 437,667 + -0.2 437,672 + +0.5 437,672 + -0.8 437,673 - -0.4 437,673 - +0.3 437,673 - +0.0 437,742 + -0.1 437,742 + +0.0 437,743 - +0.7 437,743 - +0.4 437,746 + +0.1 437,746 + -1.2 437,746 + -0.8 437,746 + -0.3 437,746 + +0.1 437,747 - -0.6 437,747 - +0.8 437,747 - -0.8 437,747 - +0.1 437,747 - +0.5 437,747 - -0.4 437,752 + -0.6 437,752 + +1.9 437,752 + -0.2 437,753 - -0.7 437,753 - +0.2 437,961 + GFF1649 0.19 -0.2 437,961 + GFF1649 0.19 +0.8 438,148 + GFF1649 0.41 +0.9 438,148 + GFF1649 0.41 +0.4 438,148 + GFF1649 0.41 -0.8 438,149 - GFF1649 0.41 +0.1 438,189 + GFF1649 0.46 -1.1 438,322 + GFF1649 0.61 -0.2 438,486 + GFF1649 0.81 +0.5 438,486 + GFF1649 0.81 +0.4 438,486 + GFF1649 0.81 +0.3 438,487 - GFF1649 0.81 -0.5 438,487 - GFF1649 0.81 +0.3 438,576 - +0.5 438,681 + +1.0 438,681 + +0.7 438,702 + -0.1 438,702 + -0.3 438,702 + -0.1 438,702 + +0.5 438,859 + GFF1650 0.15 -0.1 438,859 + GFF1650 0.15 -0.8 438,860 - GFF1650 0.15 -0.2 438,877 - GFF1650 0.17 -1.1 438,972 + GFF1650 0.26 -0.0 438,972 + GFF1650 0.26 +0.4 438,972 + GFF1650 0.26 -0.6 438,973 - GFF1650 0.26 -0.3 438,973 - GFF1650 0.26 -0.2 438,973 - GFF1650 0.26 -0.5 438,973 - GFF1650 0.26 -0.5 438,973 - GFF1650 0.26 -0.2 438,973 - GFF1650 0.26 -0.6 439,456 - GFF1650 0.72 -0.3 439,456 - GFF1650 0.72 +1.2 439,456 - GFF1650 0.72 +1.1 439,456 - GFF1650 0.72 -0.4 439,531 + GFF1650 0.79 +0.2 439,532 - GFF1650 0.79 -0.6 439,532 - GFF1650 0.79 -0.1 439,533 + GFF1650 0.79 +0.1 439,533 + GFF1650 0.79 +1.6 439,534 - GFF1650 0.80 -0.7 439,534 - GFF1650 0.80 -0.9 439,534 - GFF1650 0.80 -0.5
Or see this region's nucleotide sequence