Strain Fitness in Escherichia coli ECOR27 around NOLOHH_24475

Experiment: K5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_24470 and NOLOHH_24475 are separated by 18 nucleotidesNOLOHH_24475 and NOLOHH_24480 are separated by 17 nucleotides NOLOHH_24470: NOLOHH_24470 - prepilin-type cleavage/methylation domain-containing protein, at 38,194 to 39,765 _24470 NOLOHH_24475: NOLOHH_24475 - pilus assembly protein, at 39,784 to 40,197 _24475 NOLOHH_24480: NOLOHH_24480 - type II and III secretion system protein, at 40,215 to 41,672 _24480 Position (kb) 39 40 41Strain fitness (log2 ratio) -2 -1 0 1at 39.334 kb on - strand, within NOLOHH_24470at 39.763 kb on + strandat 39.851 kb on + strand, within NOLOHH_24475at 40.702 kb on - strand, within NOLOHH_24480at 40.839 kb on + strand, within NOLOHH_24480at 41.092 kb on + strand, within NOLOHH_24480at 41.093 kb on - strand, within NOLOHH_24480

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Per-strain Table

Position Strand Gene LocusTag Fraction K5
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39,334 - NOLOHH_24470 0.73 -1.3
39,763 + -0.2
39,851 + NOLOHH_24475 0.16 +0.1
40,702 - NOLOHH_24480 0.33 +1.7
40,839 + NOLOHH_24480 0.43 -1.6
41,092 + NOLOHH_24480 0.60 +0.7
41,093 - NOLOHH_24480 0.60 -2.3

Or see this region's nucleotide sequence