Strain Fitness in Escherichia coli ECOR27 around NOLOHH_24415

Experiment: K5

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntNOLOHH_24410 and NOLOHH_24415 are separated by 120 nucleotidesNOLOHH_24415 and NOLOHH_24420 are separated by 75 nucleotides NOLOHH_24410: NOLOHH_24410 - PapC/FimD family outer membrane usher protein, at 27,106 to 29,616 _24410 NOLOHH_24415: NOLOHH_24415 - fimbrial protein, at 29,737 to 30,324 _24415 NOLOHH_24420: NOLOHH_24420 - F7-2 fimbrial protein, at 30,400 to 30,927 _24420 Position (kb) 29 30 31Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 28.758 kb on - strand, within NOLOHH_24410at 28.814 kb on + strand, within NOLOHH_24410at 28.847 kb on + strand, within NOLOHH_24410at 28.848 kb on - strand, within NOLOHH_24410at 28.896 kb on - strand, within NOLOHH_24410at 28.902 kb on - strand, within NOLOHH_24410at 28.902 kb on - strand, within NOLOHH_24410at 29.024 kb on + strand, within NOLOHH_24410at 29.025 kb on - strand, within NOLOHH_24410at 29.025 kb on - strand, within NOLOHH_24410at 29.025 kb on - strand, within NOLOHH_24410at 29.062 kb on - strand, within NOLOHH_24410at 29.084 kb on + strand, within NOLOHH_24410at 29.085 kb on - strand, within NOLOHH_24410at 29.085 kb on - strand, within NOLOHH_24410at 29.172 kb on + strand, within NOLOHH_24410at 29.173 kb on - strand, within NOLOHH_24410at 29.180 kb on + strand, within NOLOHH_24410at 29.181 kb on - strand, within NOLOHH_24410at 29.181 kb on - strand, within NOLOHH_24410at 29.209 kb on + strand, within NOLOHH_24410at 29.363 kb on + strand, within NOLOHH_24410at 29.454 kb on + strandat 29.687 kb on - strandat 29.690 kb on - strandat 29.854 kb on + strand, within NOLOHH_24415at 29.894 kb on + strand, within NOLOHH_24415at 30.006 kb on - strand, within NOLOHH_24415at 30.089 kb on - strand, within NOLOHH_24415at 30.089 kb on - strand, within NOLOHH_24415at 30.151 kb on - strand, within NOLOHH_24415at 30.329 kb on + strandat 30.336 kb on + strandat 30.377 kb on - strandat 30.408 kb on - strandat 30.483 kb on + strand, within NOLOHH_24420at 30.483 kb on + strand, within NOLOHH_24420at 30.489 kb on - strand, within NOLOHH_24420at 30.580 kb on + strand, within NOLOHH_24420at 30.580 kb on + strand, within NOLOHH_24420at 30.581 kb on - strand, within NOLOHH_24420at 30.581 kb on - strand, within NOLOHH_24420at 30.581 kb on - strand, within NOLOHH_24420at 30.604 kb on - strand, within NOLOHH_24420at 30.604 kb on - strand, within NOLOHH_24420at 30.606 kb on + strand, within NOLOHH_24420at 30.639 kb on + strand, within NOLOHH_24420at 30.640 kb on - strand, within NOLOHH_24420at 30.700 kb on - strand, within NOLOHH_24420at 30.827 kb on - strand, within NOLOHH_24420at 31.003 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction K5
remove
28,758 - NOLOHH_24410 0.66 -0.3
28,814 + NOLOHH_24410 0.68 -0.7
28,847 + NOLOHH_24410 0.69 -0.3
28,848 - NOLOHH_24410 0.69 -0.4
28,896 - NOLOHH_24410 0.71 -0.0
28,902 - NOLOHH_24410 0.72 +0.3
28,902 - NOLOHH_24410 0.72 -1.1
29,024 + NOLOHH_24410 0.76 -0.3
29,025 - NOLOHH_24410 0.76 +0.3
29,025 - NOLOHH_24410 0.76 -0.2
29,025 - NOLOHH_24410 0.76 +0.4
29,062 - NOLOHH_24410 0.78 +0.7
29,084 + NOLOHH_24410 0.79 -0.9
29,085 - NOLOHH_24410 0.79 -0.3
29,085 - NOLOHH_24410 0.79 +0.1
29,172 + NOLOHH_24410 0.82 +1.1
29,173 - NOLOHH_24410 0.82 -0.6
29,180 + NOLOHH_24410 0.83 +0.1
29,181 - NOLOHH_24410 0.83 +0.0
29,181 - NOLOHH_24410 0.83 -0.6
29,209 + NOLOHH_24410 0.84 -1.3
29,363 + NOLOHH_24410 0.90 -0.9
29,454 + +0.3
29,687 - +1.1
29,690 - -0.1
29,854 + NOLOHH_24415 0.20 -0.3
29,894 + NOLOHH_24415 0.27 +1.2
30,006 - NOLOHH_24415 0.46 +0.0
30,089 - NOLOHH_24415 0.60 -0.3
30,089 - NOLOHH_24415 0.60 -0.3
30,151 - NOLOHH_24415 0.70 -1.2
30,329 + -0.9
30,336 + -0.6
30,377 - -0.6
30,408 - +0.7
30,483 + NOLOHH_24420 0.16 -0.3
30,483 + NOLOHH_24420 0.16 -0.9
30,489 - NOLOHH_24420 0.17 -0.1
30,580 + NOLOHH_24420 0.34 +2.1
30,580 + NOLOHH_24420 0.34 -0.3
30,581 - NOLOHH_24420 0.34 +0.7
30,581 - NOLOHH_24420 0.34 +0.7
30,581 - NOLOHH_24420 0.34 +1.1
30,604 - NOLOHH_24420 0.39 -0.3
30,604 - NOLOHH_24420 0.39 +0.1
30,606 + NOLOHH_24420 0.39 +0.7
30,639 + NOLOHH_24420 0.45 -2.8
30,640 - NOLOHH_24420 0.45 -0.4
30,700 - NOLOHH_24420 0.57 +0.7
30,827 - NOLOHH_24420 0.81 +0.0
31,003 - +0.7

Or see this region's nucleotide sequence