Strain Fitness in Escherichia coli ECOR27 around NOLOHH_24410

Experiment: K5

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntNOLOHH_24400 and NOLOHH_24405 are separated by 36 nucleotidesNOLOHH_24405 and NOLOHH_24410 are separated by 68 nucleotidesNOLOHH_24410 and NOLOHH_24415 are separated by 120 nucleotidesNOLOHH_24415 and NOLOHH_24420 are separated by 75 nucleotides NOLOHH_24400: NOLOHH_24400 - nuclease PIN, at 25,754 to 26,269 _24400 NOLOHH_24405: NOLOHH_24405 - molecular chaperone, at 26,306 to 27,037 _24405 NOLOHH_24410: NOLOHH_24410 - PapC/FimD family outer membrane usher protein, at 27,106 to 29,616 _24410 NOLOHH_24415: NOLOHH_24415 - fimbrial protein, at 29,737 to 30,324 _24415 NOLOHH_24420: NOLOHH_24420 - F7-2 fimbrial protein, at 30,400 to 30,927 _24420 Position (kb) 27 28 29 30Strain fitness (log2 ratio) -2 -1 0 1 2 3at 26.245 kb on - strandat 26.245 kb on - strandat 26.308 kb on - strandat 26.315 kb on + strandat 26.323 kb on + strandat 26.323 kb on + strandat 26.355 kb on - strandat 26.380 kb on + strand, within NOLOHH_24405at 26.381 kb on - strand, within NOLOHH_24405at 26.381 kb on - strand, within NOLOHH_24405at 26.382 kb on + strand, within NOLOHH_24405at 26.382 kb on + strand, within NOLOHH_24405at 26.392 kb on - strand, within NOLOHH_24405at 26.404 kb on - strand, within NOLOHH_24405at 26.502 kb on - strand, within NOLOHH_24405at 26.511 kb on + strand, within NOLOHH_24405at 26.511 kb on + strand, within NOLOHH_24405at 26.511 kb on + strand, within NOLOHH_24405at 26.512 kb on - strand, within NOLOHH_24405at 26.512 kb on - strand, within NOLOHH_24405at 26.512 kb on - strand, within NOLOHH_24405at 26.515 kb on - strand, within NOLOHH_24405at 26.515 kb on - strand, within NOLOHH_24405at 26.602 kb on + strand, within NOLOHH_24405at 26.616 kb on + strand, within NOLOHH_24405at 26.627 kb on + strand, within NOLOHH_24405at 26.628 kb on - strand, within NOLOHH_24405at 26.665 kb on + strand, within NOLOHH_24405at 26.764 kb on + strand, within NOLOHH_24405at 26.764 kb on + strand, within NOLOHH_24405at 26.765 kb on - strand, within NOLOHH_24405at 26.765 kb on - strand, within NOLOHH_24405at 26.868 kb on + strand, within NOLOHH_24405at 26.975 kb on + strandat 26.976 kb on - strandat 27.079 kb on + strandat 27.079 kb on + strandat 27.080 kb on - strandat 27.099 kb on + strandat 27.099 kb on + strandat 27.100 kb on - strandat 27.100 kb on - strandat 27.352 kb on - strandat 27.479 kb on + strand, within NOLOHH_24410at 27.480 kb on - strand, within NOLOHH_24410at 27.480 kb on - strand, within NOLOHH_24410at 27.480 kb on - strand, within NOLOHH_24410at 27.480 kb on - strand, within NOLOHH_24410at 27.731 kb on + strand, within NOLOHH_24410at 27.731 kb on + strand, within NOLOHH_24410at 27.732 kb on - strand, within NOLOHH_24410at 27.735 kb on - strand, within NOLOHH_24410at 27.798 kb on - strand, within NOLOHH_24410at 27.798 kb on - strand, within NOLOHH_24410at 27.830 kb on + strand, within NOLOHH_24410at 27.830 kb on + strand, within NOLOHH_24410at 27.876 kb on - strand, within NOLOHH_24410at 27.876 kb on - strand, within NOLOHH_24410at 27.979 kb on - strand, within NOLOHH_24410at 28.025 kb on + strand, within NOLOHH_24410at 28.025 kb on + strand, within NOLOHH_24410at 28.026 kb on - strand, within NOLOHH_24410at 28.026 kb on - strand, within NOLOHH_24410at 28.026 kb on - strand, within NOLOHH_24410at 28.028 kb on + strand, within NOLOHH_24410at 28.029 kb on - strand, within NOLOHH_24410at 28.067 kb on + strand, within NOLOHH_24410at 28.067 kb on + strand, within NOLOHH_24410at 28.124 kb on + strand, within NOLOHH_24410at 28.124 kb on + strand, within NOLOHH_24410at 28.125 kb on - strand, within NOLOHH_24410at 28.125 kb on - strand, within NOLOHH_24410at 28.176 kb on - strand, within NOLOHH_24410at 28.193 kb on + strand, within NOLOHH_24410at 28.193 kb on + strand, within NOLOHH_24410at 28.193 kb on + strand, within NOLOHH_24410at 28.193 kb on + strand, within NOLOHH_24410at 28.193 kb on + strand, within NOLOHH_24410at 28.194 kb on - strand, within NOLOHH_24410at 28.194 kb on - strand, within NOLOHH_24410at 28.194 kb on - strand, within NOLOHH_24410at 28.194 kb on - strand, within NOLOHH_24410at 28.327 kb on + strand, within NOLOHH_24410at 28.327 kb on + strand, within NOLOHH_24410at 28.327 kb on + strand, within NOLOHH_24410at 28.392 kb on - strand, within NOLOHH_24410at 28.392 kb on - strand, within NOLOHH_24410at 28.392 kb on - strand, within NOLOHH_24410at 28.493 kb on + strand, within NOLOHH_24410at 28.493 kb on + strand, within NOLOHH_24410at 28.493 kb on + strand, within NOLOHH_24410at 28.493 kb on + strand, within NOLOHH_24410at 28.494 kb on - strand, within NOLOHH_24410at 28.497 kb on + strand, within NOLOHH_24410at 28.498 kb on - strand, within NOLOHH_24410at 28.559 kb on + strand, within NOLOHH_24410at 28.559 kb on + strand, within NOLOHH_24410at 28.559 kb on + strand, within NOLOHH_24410at 28.559 kb on + strand, within NOLOHH_24410at 28.559 kb on + strand, within NOLOHH_24410at 28.560 kb on - strand, within NOLOHH_24410at 28.560 kb on - strand, within NOLOHH_24410at 28.560 kb on - strand, within NOLOHH_24410at 28.560 kb on - strand, within NOLOHH_24410at 28.560 kb on - strand, within NOLOHH_24410at 28.560 kb on - strand, within NOLOHH_24410at 28.758 kb on - strand, within NOLOHH_24410at 28.814 kb on + strand, within NOLOHH_24410at 28.847 kb on + strand, within NOLOHH_24410at 28.848 kb on - strand, within NOLOHH_24410at 28.896 kb on - strand, within NOLOHH_24410at 28.902 kb on - strand, within NOLOHH_24410at 28.902 kb on - strand, within NOLOHH_24410at 29.024 kb on + strand, within NOLOHH_24410at 29.025 kb on - strand, within NOLOHH_24410at 29.025 kb on - strand, within NOLOHH_24410at 29.025 kb on - strand, within NOLOHH_24410at 29.062 kb on - strand, within NOLOHH_24410at 29.084 kb on + strand, within NOLOHH_24410at 29.085 kb on - strand, within NOLOHH_24410at 29.085 kb on - strand, within NOLOHH_24410at 29.172 kb on + strand, within NOLOHH_24410at 29.173 kb on - strand, within NOLOHH_24410at 29.180 kb on + strand, within NOLOHH_24410at 29.181 kb on - strand, within NOLOHH_24410at 29.181 kb on - strand, within NOLOHH_24410at 29.209 kb on + strand, within NOLOHH_24410at 29.363 kb on + strand, within NOLOHH_24410at 29.454 kb on + strandat 29.687 kb on - strandat 29.690 kb on - strandat 29.854 kb on + strand, within NOLOHH_24415at 29.894 kb on + strand, within NOLOHH_24415at 30.006 kb on - strand, within NOLOHH_24415at 30.089 kb on - strand, within NOLOHH_24415at 30.089 kb on - strand, within NOLOHH_24415at 30.151 kb on - strand, within NOLOHH_24415at 30.329 kb on + strandat 30.336 kb on + strandat 30.377 kb on - strandat 30.408 kb on - strandat 30.483 kb on + strand, within NOLOHH_24420at 30.483 kb on + strand, within NOLOHH_24420at 30.489 kb on - strand, within NOLOHH_24420at 30.580 kb on + strand, within NOLOHH_24420at 30.580 kb on + strand, within NOLOHH_24420at 30.581 kb on - strand, within NOLOHH_24420at 30.581 kb on - strand, within NOLOHH_24420at 30.581 kb on - strand, within NOLOHH_24420at 30.604 kb on - strand, within NOLOHH_24420at 30.604 kb on - strand, within NOLOHH_24420at 30.606 kb on + strand, within NOLOHH_24420

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction K5
remove
26,245 - -0.3
26,245 - -0.9
26,308 - +2.3
26,315 + -0.3
26,323 + +0.7
26,323 + -0.6
26,355 - +0.7
26,380 + NOLOHH_24405 0.10 +0.1
26,381 - NOLOHH_24405 0.10 -1.6
26,381 - NOLOHH_24405 0.10 -0.3
26,382 + NOLOHH_24405 0.10 +0.7
26,382 + NOLOHH_24405 0.10 -1.6
26,392 - NOLOHH_24405 0.12 -0.6
26,404 - NOLOHH_24405 0.13 -0.6
26,502 - NOLOHH_24405 0.27 +0.8
26,511 + NOLOHH_24405 0.28 -0.5
26,511 + NOLOHH_24405 0.28 +0.4
26,511 + NOLOHH_24405 0.28 +0.7
26,512 - NOLOHH_24405 0.28 -0.9
26,512 - NOLOHH_24405 0.28 +0.3
26,512 - NOLOHH_24405 0.28 -0.1
26,515 - NOLOHH_24405 0.29 +0.7
26,515 - NOLOHH_24405 0.29 +0.5
26,602 + NOLOHH_24405 0.40 -1.6
26,616 + NOLOHH_24405 0.42 +1.4
26,627 + NOLOHH_24405 0.44 -0.7
26,628 - NOLOHH_24405 0.44 -0.9
26,665 + NOLOHH_24405 0.49 +0.3
26,764 + NOLOHH_24405 0.63 -0.7
26,764 + NOLOHH_24405 0.63 +0.3
26,765 - NOLOHH_24405 0.63 +0.5
26,765 - NOLOHH_24405 0.63 +1.8
26,868 + NOLOHH_24405 0.77 -1.3
26,975 + -0.1
26,976 - +1.0
27,079 + +1.7
27,079 + +0.1
27,080 - +0.7
27,099 + +0.1
27,099 + +0.7
27,100 - +0.7
27,100 - -0.3
27,352 - +0.1
27,479 + NOLOHH_24410 0.15 +0.7
27,480 - NOLOHH_24410 0.15 -0.7
27,480 - NOLOHH_24410 0.15 -1.0
27,480 - NOLOHH_24410 0.15 +0.1
27,480 - NOLOHH_24410 0.15 -0.9
27,731 + NOLOHH_24410 0.25 -2.1
27,731 + NOLOHH_24410 0.25 -1.1
27,732 - NOLOHH_24410 0.25 +0.7
27,735 - NOLOHH_24410 0.25 -0.0
27,798 - NOLOHH_24410 0.28 -0.3
27,798 - NOLOHH_24410 0.28 -0.5
27,830 + NOLOHH_24410 0.29 -0.2
27,830 + NOLOHH_24410 0.29 -1.2
27,876 - NOLOHH_24410 0.31 -0.7
27,876 - NOLOHH_24410 0.31 +0.1
27,979 - NOLOHH_24410 0.35 +0.0
28,025 + NOLOHH_24410 0.37 -1.9
28,025 + NOLOHH_24410 0.37 +2.3
28,026 - NOLOHH_24410 0.37 -0.5
28,026 - NOLOHH_24410 0.37 +0.1
28,026 - NOLOHH_24410 0.37 -0.5
28,028 + NOLOHH_24410 0.37 -0.3
28,029 - NOLOHH_24410 0.37 +0.4
28,067 + NOLOHH_24410 0.38 -0.5
28,067 + NOLOHH_24410 0.38 -0.9
28,124 + NOLOHH_24410 0.41 -0.9
28,124 + NOLOHH_24410 0.41 +1.7
28,125 - NOLOHH_24410 0.41 -0.3
28,125 - NOLOHH_24410 0.41 -0.0
28,176 - NOLOHH_24410 0.43 -1.0
28,193 + NOLOHH_24410 0.43 +1.1
28,193 + NOLOHH_24410 0.43 +1.7
28,193 + NOLOHH_24410 0.43 +0.9
28,193 + NOLOHH_24410 0.43 +0.0
28,193 + NOLOHH_24410 0.43 +0.3
28,194 - NOLOHH_24410 0.43 -1.2
28,194 - NOLOHH_24410 0.43 +0.1
28,194 - NOLOHH_24410 0.43 -0.9
28,194 - NOLOHH_24410 0.43 +0.7
28,327 + NOLOHH_24410 0.49 -0.3
28,327 + NOLOHH_24410 0.49 +0.9
28,327 + NOLOHH_24410 0.49 -0.9
28,392 - NOLOHH_24410 0.51 -1.9
28,392 - NOLOHH_24410 0.51 -2.0
28,392 - NOLOHH_24410 0.51 +0.3
28,493 + NOLOHH_24410 0.55 -0.9
28,493 + NOLOHH_24410 0.55 -0.4
28,493 + NOLOHH_24410 0.55 +0.1
28,493 + NOLOHH_24410 0.55 +0.3
28,494 - NOLOHH_24410 0.55 +3.0
28,497 + NOLOHH_24410 0.55 +0.3
28,498 - NOLOHH_24410 0.55 -1.9
28,559 + NOLOHH_24410 0.58 -0.4
28,559 + NOLOHH_24410 0.58 +0.7
28,559 + NOLOHH_24410 0.58 +0.7
28,559 + NOLOHH_24410 0.58 +0.7
28,559 + NOLOHH_24410 0.58 -1.6
28,560 - NOLOHH_24410 0.58 +0.7
28,560 - NOLOHH_24410 0.58 +0.2
28,560 - NOLOHH_24410 0.58 +0.2
28,560 - NOLOHH_24410 0.58 +0.7
28,560 - NOLOHH_24410 0.58 -0.3
28,560 - NOLOHH_24410 0.58 +0.9
28,758 - NOLOHH_24410 0.66 -0.3
28,814 + NOLOHH_24410 0.68 -0.7
28,847 + NOLOHH_24410 0.69 -0.3
28,848 - NOLOHH_24410 0.69 -0.4
28,896 - NOLOHH_24410 0.71 -0.0
28,902 - NOLOHH_24410 0.72 +0.3
28,902 - NOLOHH_24410 0.72 -1.1
29,024 + NOLOHH_24410 0.76 -0.3
29,025 - NOLOHH_24410 0.76 +0.3
29,025 - NOLOHH_24410 0.76 -0.2
29,025 - NOLOHH_24410 0.76 +0.4
29,062 - NOLOHH_24410 0.78 +0.7
29,084 + NOLOHH_24410 0.79 -0.9
29,085 - NOLOHH_24410 0.79 -0.3
29,085 - NOLOHH_24410 0.79 +0.1
29,172 + NOLOHH_24410 0.82 +1.1
29,173 - NOLOHH_24410 0.82 -0.6
29,180 + NOLOHH_24410 0.83 +0.1
29,181 - NOLOHH_24410 0.83 +0.0
29,181 - NOLOHH_24410 0.83 -0.6
29,209 + NOLOHH_24410 0.84 -1.3
29,363 + NOLOHH_24410 0.90 -0.9
29,454 + +0.3
29,687 - +1.1
29,690 - -0.1
29,854 + NOLOHH_24415 0.20 -0.3
29,894 + NOLOHH_24415 0.27 +1.2
30,006 - NOLOHH_24415 0.46 +0.0
30,089 - NOLOHH_24415 0.60 -0.3
30,089 - NOLOHH_24415 0.60 -0.3
30,151 - NOLOHH_24415 0.70 -1.2
30,329 + -0.9
30,336 + -0.6
30,377 - -0.6
30,408 - +0.7
30,483 + NOLOHH_24420 0.16 -0.3
30,483 + NOLOHH_24420 0.16 -0.9
30,489 - NOLOHH_24420 0.17 -0.1
30,580 + NOLOHH_24420 0.34 +2.1
30,580 + NOLOHH_24420 0.34 -0.3
30,581 - NOLOHH_24420 0.34 +0.7
30,581 - NOLOHH_24420 0.34 +0.7
30,581 - NOLOHH_24420 0.34 +1.1
30,604 - NOLOHH_24420 0.39 -0.3
30,604 - NOLOHH_24420 0.39 +0.1
30,606 + NOLOHH_24420 0.39 +0.7

Or see this region's nucleotide sequence