Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tnp-IS3 and yhhI are separated by 93 nucleotides yhhI and NOLOHH_24135 are separated by 44 nucleotides NOLOHH_24135 and nrfB are separated by 167 nucleotides
NOLOHH_24125: tnp-IS3 - IS3 family transposase, at 4,755,510 to 4,756,376
tnp-IS3
NOLOHH_24130: yhhI - ISAs1 family transposase, at 4,756,470 to 4,757,327
yhhI
NOLOHH_24135: NOLOHH_24135 - H repeat-associated protein yhhi (Orf-h), at 4,757,372 to 4,757,428
_24135
NOLOHH_24140: nrfB - phage adsorption protein NrfB, at 4,757,596 to 4,759,833
nrfB
Position (kb)
4757
4758 Strain fitness (log2 ratio)
-1
0
1
2 at 4756.391 kb on + strand at 4756.391 kb on + strand at 4756.424 kb on - strand at 4757.258 kb on + strand at 4757.371 kb on + strand at 4757.444 kb on + strand at 4757.509 kb on + strand at 4757.510 kb on - strand at 4757.513 kb on - strand at 4757.518 kb on + strand at 4757.549 kb on - strand at 4757.551 kb on + strand at 4757.551 kb on + strand at 4757.554 kb on - strand at 4757.564 kb on - strand at 4757.584 kb on + strand at 4757.633 kb on - strand at 4757.774 kb on - strand at 4757.786 kb on - strand at 4757.786 kb on - strand at 4757.894 kb on - strand, within nrfB at 4757.898 kb on + strand, within nrfB at 4757.898 kb on + strand, within nrfB at 4757.899 kb on - strand, within nrfB at 4757.932 kb on - strand, within nrfB at 4757.979 kb on + strand, within nrfB at 4757.979 kb on + strand, within nrfB at 4757.980 kb on - strand, within nrfB at 4757.980 kb on - strand, within nrfB at 4757.980 kb on - strand, within nrfB at 4757.985 kb on - strand, within nrfB at 4758.064 kb on - strand, within nrfB at 4758.064 kb on - strand, within nrfB at 4758.090 kb on + strand, within nrfB at 4758.090 kb on + strand, within nrfB at 4758.090 kb on + strand, within nrfB at 4758.146 kb on - strand, within nrfB at 4758.146 kb on - strand, within nrfB at 4758.184 kb on + strand, within nrfB at 4758.227 kb on - strand, within nrfB at 4758.227 kb on - strand, within nrfB
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 4,756,391 + +0.7 4,756,391 + -0.3 4,756,424 - +0.7 4,757,258 + +0.3 4,757,371 + -0.3 4,757,444 + +0.3 4,757,509 + -0.3 4,757,510 - -0.8 4,757,513 - +1.1 4,757,518 + -1.4 4,757,549 - -0.8 4,757,551 + -1.4 4,757,551 + -0.8 4,757,554 - +0.7 4,757,564 - +0.7 4,757,584 + +0.0 4,757,633 - -1.6 4,757,774 - -0.8 4,757,786 - -0.3 4,757,786 - +0.5 4,757,894 - nrfB NOLOHH_24140 0.13 +0.7 4,757,898 + nrfB NOLOHH_24140 0.13 +0.2 4,757,898 + nrfB NOLOHH_24140 0.13 -0.0 4,757,899 - nrfB NOLOHH_24140 0.14 +1.7 4,757,932 - nrfB NOLOHH_24140 0.15 +1.5 4,757,979 + nrfB NOLOHH_24140 0.17 -0.7 4,757,979 + nrfB NOLOHH_24140 0.17 -1.0 4,757,980 - nrfB NOLOHH_24140 0.17 +1.1 4,757,980 - nrfB NOLOHH_24140 0.17 +0.0 4,757,980 - nrfB NOLOHH_24140 0.17 -0.4 4,757,985 - nrfB NOLOHH_24140 0.17 +0.1 4,758,064 - nrfB NOLOHH_24140 0.21 +0.5 4,758,064 - nrfB NOLOHH_24140 0.21 +1.3 4,758,090 + nrfB NOLOHH_24140 0.22 +0.3 4,758,090 + nrfB NOLOHH_24140 0.22 +1.0 4,758,090 + nrfB NOLOHH_24140 0.22 +2.7 4,758,146 - nrfB NOLOHH_24140 0.25 +0.2 4,758,146 - nrfB NOLOHH_24140 0.25 +0.7 4,758,184 + nrfB NOLOHH_24140 0.26 +2.2 4,758,227 - nrfB NOLOHH_24140 0.28 +0.7 4,758,227 - nrfB NOLOHH_24140 0.28 +1.1
Or see this region's nucleotide sequence