Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_24115 and tnp-IS3 are separated by 244 nucleotides tnp-IS3 and tnp-IS3 overlap by 4 nucleotides tnp-IS3 and yhhI are separated by 93 nucleotides yhhI and NOLOHH_24135 are separated by 44 nucleotides
NOLOHH_24115: NOLOHH_24115 - hypothetical protein, at 4,754,526 to 4,754,969
_24115
NOLOHH_24120: tnp-IS3 - IS3 family IS3 transposase, at 4,755,214 to 4,755,513
tnp-IS3
NOLOHH_24125: tnp-IS3 - IS3 family transposase, at 4,755,510 to 4,756,376
tnp-IS3
NOLOHH_24130: yhhI - ISAs1 family transposase, at 4,756,470 to 4,757,327
yhhI
NOLOHH_24135: NOLOHH_24135 - H repeat-associated protein yhhi (Orf-h), at 4,757,372 to 4,757,428
_24135
Position (kb) 4755
4756
4757 Strain fitness (log2 ratio) -1
0
1
2 at 4754.867 kb on + strand, within NOLOHH_24115 at 4754.968 kb on - strand at 4754.986 kb on + strand at 4755.057 kb on + strand at 4755.057 kb on + strand at 4755.057 kb on + strand at 4755.128 kb on + strand at 4755.128 kb on + strand at 4756.391 kb on + strand at 4756.391 kb on + strand at 4756.424 kb on - strand at 4757.258 kb on + strand at 4757.371 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 4,754,867 + NOLOHH_24115 0.77 +0.2 4,754,968 - -0.8 4,754,986 + -0.3 4,755,057 + +2.0 4,755,057 + -0.7 4,755,057 + -0.6 4,755,128 + +1.7 4,755,128 + -0.1 4,756,391 + +0.7 4,756,391 + -0.3 4,756,424 - +0.7 4,757,258 + +0.3 4,757,371 + -0.3
Or see this region's nucleotide sequence