Strain Fitness in Escherichia coli ECOR27 around NOLOHH_24120

Experiment: K5

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntNOLOHH_24115 and tnp-IS3 are separated by 244 nucleotidestnp-IS3 and tnp-IS3 overlap by 4 nucleotidestnp-IS3 and yhhI are separated by 93 nucleotides NOLOHH_24115: NOLOHH_24115 - hypothetical protein, at 4,754,526 to 4,754,969 _24115 NOLOHH_24120: tnp-IS3 - IS3 family IS3 transposase, at 4,755,214 to 4,755,513 tnp-IS3 NOLOHH_24125: tnp-IS3 - IS3 family transposase, at 4,755,510 to 4,756,376 tnp-IS3 NOLOHH_24130: yhhI - ISAs1 family transposase, at 4,756,470 to 4,757,327 yhhI Position (kb) 4755 4756Strain fitness (log2 ratio) -1 0 1 2at 4754.361 kb on + strandat 4754.867 kb on + strand, within NOLOHH_24115at 4754.968 kb on - strandat 4754.986 kb on + strandat 4755.057 kb on + strandat 4755.057 kb on + strandat 4755.057 kb on + strandat 4755.128 kb on + strandat 4755.128 kb on + strandat 4756.391 kb on + strandat 4756.391 kb on + strandat 4756.424 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction K5
remove
4,754,361 + -0.3
4,754,867 + NOLOHH_24115 0.77 +0.2
4,754,968 - -0.8
4,754,986 + -0.3
4,755,057 + +2.0
4,755,057 + -0.7
4,755,057 + -0.6
4,755,128 + +1.7
4,755,128 + -0.1
4,756,391 + +0.7
4,756,391 + -0.3
4,756,424 - +0.7

Or see this region's nucleotide sequence