Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_22860 and NOLOHH_22865 are separated by 528 nucleotides NOLOHH_22865 and NOLOHH_22870 are separated by 149 nucleotides NOLOHH_22870 and NOLOHH_22875 overlap by 4 nucleotides
NOLOHH_22860: NOLOHH_22860 - terminase small subunit, at 4,515,784 to 4,516,311
_22860
NOLOHH_22865: NOLOHH_22865 - ORF11CD3 domain-containing protein, at 4,516,840 to 4,517,445
_22865
NOLOHH_22870: NOLOHH_22870 - lysis protein, at 4,517,595 to 4,518,032
_22870
NOLOHH_22875: NOLOHH_22875 - Endolysin, at 4,518,029 to 4,518,505
_22875
Position (kb)
4516
4517
4518 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4515.873 kb on + strand, within NOLOHH_22860 at 4515.874 kb on - strand, within NOLOHH_22860 at 4515.925 kb on - strand, within NOLOHH_22860 at 4516.017 kb on + strand, within NOLOHH_22860 at 4516.092 kb on + strand, within NOLOHH_22860 at 4516.110 kb on - strand, within NOLOHH_22860 at 4516.122 kb on + strand, within NOLOHH_22860 at 4516.210 kb on - strand, within NOLOHH_22860 at 4516.316 kb on + strand at 4516.316 kb on + strand at 4516.325 kb on + strand at 4516.329 kb on + strand at 4516.329 kb on + strand at 4516.338 kb on + strand at 4516.339 kb on - strand at 4516.346 kb on + strand at 4516.399 kb on + strand at 4516.407 kb on + strand at 4516.407 kb on + strand at 4516.461 kb on + strand at 4516.591 kb on + strand at 4516.625 kb on + strand at 4516.637 kb on - strand at 4516.661 kb on - strand at 4516.798 kb on - strand at 4516.845 kb on + strand at 4516.846 kb on - strand at 4516.846 kb on - strand at 4516.904 kb on - strand, within NOLOHH_22865 at 4516.954 kb on - strand, within NOLOHH_22865 at 4516.954 kb on - strand, within NOLOHH_22865 at 4516.954 kb on - strand, within NOLOHH_22865 at 4516.979 kb on + strand, within NOLOHH_22865 at 4516.979 kb on + strand, within NOLOHH_22865 at 4516.979 kb on + strand, within NOLOHH_22865 at 4516.980 kb on - strand, within NOLOHH_22865 at 4516.980 kb on - strand, within NOLOHH_22865 at 4516.980 kb on - strand, within NOLOHH_22865 at 4516.980 kb on - strand, within NOLOHH_22865 at 4516.991 kb on - strand, within NOLOHH_22865 at 4517.029 kb on - strand, within NOLOHH_22865 at 4517.053 kb on - strand, within NOLOHH_22865 at 4517.062 kb on + strand, within NOLOHH_22865 at 4517.062 kb on + strand, within NOLOHH_22865 at 4517.063 kb on - strand, within NOLOHH_22865 at 4517.063 kb on - strand, within NOLOHH_22865 at 4517.063 kb on - strand, within NOLOHH_22865 at 4517.063 kb on - strand, within NOLOHH_22865 at 4517.063 kb on - strand, within NOLOHH_22865 at 4517.063 kb on - strand, within NOLOHH_22865 at 4517.064 kb on + strand, within NOLOHH_22865 at 4517.065 kb on - strand, within NOLOHH_22865 at 4517.065 kb on - strand, within NOLOHH_22865 at 4517.067 kb on - strand, within NOLOHH_22865 at 4517.067 kb on - strand, within NOLOHH_22865 at 4517.131 kb on - strand, within NOLOHH_22865 at 4517.255 kb on - strand, within NOLOHH_22865 at 4517.329 kb on - strand, within NOLOHH_22865 at 4517.333 kb on - strand, within NOLOHH_22865 at 4517.366 kb on - strand, within NOLOHH_22865 at 4517.521 kb on - strand at 4517.525 kb on - strand at 4517.575 kb on - strand at 4517.616 kb on - strand at 4517.620 kb on + strand at 4517.621 kb on - strand at 4517.621 kb on - strand at 4517.621 kb on - strand at 4517.632 kb on + strand at 4517.632 kb on + strand at 4517.680 kb on + strand, within NOLOHH_22870 at 4517.680 kb on + strand, within NOLOHH_22870 at 4517.681 kb on - strand, within NOLOHH_22870 at 4517.702 kb on + strand, within NOLOHH_22870 at 4517.703 kb on - strand, within NOLOHH_22870 at 4517.852 kb on - strand, within NOLOHH_22870 at 4517.871 kb on + strand, within NOLOHH_22870 at 4517.871 kb on + strand, within NOLOHH_22870 at 4517.894 kb on + strand, within NOLOHH_22870 at 4517.894 kb on + strand, within NOLOHH_22870 at 4518.094 kb on + strand, within NOLOHH_22875 at 4518.139 kb on + strand, within NOLOHH_22875 at 4518.170 kb on - strand, within NOLOHH_22875 at 4518.271 kb on + strand, within NOLOHH_22875 at 4518.271 kb on + strand, within NOLOHH_22875 at 4518.272 kb on - strand, within NOLOHH_22875 at 4518.272 kb on - strand, within NOLOHH_22875 at 4518.276 kb on + strand, within NOLOHH_22875 at 4518.383 kb on + strand, within NOLOHH_22875
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 4,515,873 + NOLOHH_22860 0.17 +2.7 4,515,874 - NOLOHH_22860 0.17 -1.4 4,515,925 - NOLOHH_22860 0.27 +1.7 4,516,017 + NOLOHH_22860 0.44 -0.8 4,516,092 + NOLOHH_22860 0.58 -0.6 4,516,110 - NOLOHH_22860 0.62 +0.7 4,516,122 + NOLOHH_22860 0.64 -0.1 4,516,210 - NOLOHH_22860 0.81 +0.7 4,516,316 + -1.3 4,516,316 + -1.8 4,516,325 + -1.1 4,516,329 + -0.5 4,516,329 + +0.5 4,516,338 + -1.1 4,516,339 - +1.7 4,516,346 + +0.7 4,516,399 + -0.5 4,516,407 + -2.3 4,516,407 + +0.3 4,516,461 + -0.4 4,516,591 + -1.3 4,516,625 + -0.8 4,516,637 - -0.3 4,516,661 - -0.6 4,516,798 - +0.7 4,516,845 + +1.7 4,516,846 - -1.8 4,516,846 - +1.4 4,516,904 - NOLOHH_22865 0.11 -1.6 4,516,954 - NOLOHH_22865 0.19 +0.4 4,516,954 - NOLOHH_22865 0.19 +0.5 4,516,954 - NOLOHH_22865 0.19 -1.7 4,516,979 + NOLOHH_22865 0.23 +0.2 4,516,979 + NOLOHH_22865 0.23 +0.7 4,516,979 + NOLOHH_22865 0.23 +0.7 4,516,980 - NOLOHH_22865 0.23 -0.6 4,516,980 - NOLOHH_22865 0.23 -0.1 4,516,980 - NOLOHH_22865 0.23 +0.7 4,516,980 - NOLOHH_22865 0.23 -0.8 4,516,991 - NOLOHH_22865 0.25 +0.1 4,517,029 - NOLOHH_22865 0.31 +0.3 4,517,053 - NOLOHH_22865 0.35 -0.8 4,517,062 + NOLOHH_22865 0.37 +0.7 4,517,062 + NOLOHH_22865 0.37 -0.8 4,517,063 - NOLOHH_22865 0.37 -0.1 4,517,063 - NOLOHH_22865 0.37 -0.8 4,517,063 - NOLOHH_22865 0.37 +0.3 4,517,063 - NOLOHH_22865 0.37 -0.5 4,517,063 - NOLOHH_22865 0.37 -0.3 4,517,063 - NOLOHH_22865 0.37 +1.7 4,517,064 + NOLOHH_22865 0.37 -1.8 4,517,065 - NOLOHH_22865 0.37 +0.2 4,517,065 - NOLOHH_22865 0.37 +1.1 4,517,067 - NOLOHH_22865 0.37 +1.5 4,517,067 - NOLOHH_22865 0.37 +0.4 4,517,131 - NOLOHH_22865 0.48 +0.5 4,517,255 - NOLOHH_22865 0.68 +0.1 4,517,329 - NOLOHH_22865 0.81 -0.4 4,517,333 - NOLOHH_22865 0.81 +1.7 4,517,366 - NOLOHH_22865 0.87 +1.3 4,517,521 - +1.1 4,517,525 - -0.8 4,517,575 - -1.4 4,517,616 - -0.1 4,517,620 + +0.7 4,517,621 - +1.6 4,517,621 - -0.3 4,517,621 - +0.5 4,517,632 + -0.5 4,517,632 + +0.3 4,517,680 + NOLOHH_22870 0.19 +0.2 4,517,680 + NOLOHH_22870 0.19 +0.0 4,517,681 - NOLOHH_22870 0.20 -0.4 4,517,702 + NOLOHH_22870 0.24 -0.8 4,517,703 - NOLOHH_22870 0.25 -0.3 4,517,852 - NOLOHH_22870 0.59 +0.5 4,517,871 + NOLOHH_22870 0.63 -1.4 4,517,871 + NOLOHH_22870 0.63 +0.2 4,517,894 + NOLOHH_22870 0.68 +1.3 4,517,894 + NOLOHH_22870 0.68 -1.6 4,518,094 + NOLOHH_22875 0.14 +0.7 4,518,139 + NOLOHH_22875 0.23 -0.4 4,518,170 - NOLOHH_22875 0.30 +0.7 4,518,271 + NOLOHH_22875 0.51 +0.2 4,518,271 + NOLOHH_22875 0.51 -0.7 4,518,272 - NOLOHH_22875 0.51 -0.3 4,518,272 - NOLOHH_22875 0.51 +1.1 4,518,276 + NOLOHH_22875 0.52 -0.1 4,518,383 + NOLOHH_22875 0.74 +0.0
Or see this region's nucleotide sequence