Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yccE and cbpA are separated by 260 nucleotides cbpA and cbpM overlap by 1 nucleotides cbpM and torD are separated by 92 nucleotides torD and torA overlap by 4 nucleotides
NOLOHH_21570: yccE - YccE family protein, at 4,238,350 to 4,239,606
yccE
NOLOHH_21575: cbpA - curved DNA-binding protein, at 4,239,867 to 4,240,787
cbpA
NOLOHH_21580: cbpM - chaperone modulator CbpM, at 4,240,787 to 4,241,092
cbpM
NOLOHH_21585: torD - molecular chaperone TorD, at 4,241,185 to 4,241,784
torD
NOLOHH_21590: torA - trimethylamine-N-oxide reductase TorA, at 4,241,781 to 4,244,327
torA
Position (kb)
4239
4240
4241 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4239.672 kb on + strand at 4239.765 kb on + strand at 4239.765 kb on + strand at 4239.765 kb on + strand at 4239.765 kb on + strand at 4239.765 kb on + strand at 4239.808 kb on + strand at 4239.810 kb on + strand at 4239.961 kb on - strand, within cbpA at 4239.961 kb on - strand, within cbpA at 4240.097 kb on + strand, within cbpA at 4240.115 kb on + strand, within cbpA at 4240.133 kb on + strand, within cbpA at 4240.277 kb on + strand, within cbpA at 4240.287 kb on + strand, within cbpA at 4240.287 kb on + strand, within cbpA at 4240.481 kb on + strand, within cbpA at 4240.668 kb on + strand, within cbpA at 4240.669 kb on - strand, within cbpA at 4240.810 kb on + strand at 4240.813 kb on + strand at 4240.813 kb on + strand at 4241.079 kb on + strand at 4241.079 kb on + strand at 4241.461 kb on + strand, within torD at 4241.462 kb on - strand, within torD at 4241.462 kb on - strand, within torD at 4241.507 kb on + strand, within torD at 4241.524 kb on + strand, within torD at 4241.524 kb on + strand, within torD at 4241.587 kb on + strand, within torD at 4241.605 kb on - strand, within torD
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 4,239,672 + -2.0 4,239,765 + +0.9 4,239,765 + +0.0 4,239,765 + -0.4 4,239,765 + +1.3 4,239,765 + +0.3 4,239,808 + +0.8 4,239,810 + -0.1 4,239,961 - cbpA NOLOHH_21575 0.10 +1.2 4,239,961 - cbpA NOLOHH_21575 0.10 +1.8 4,240,097 + cbpA NOLOHH_21575 0.25 +2.2 4,240,115 + cbpA NOLOHH_21575 0.27 -0.4 4,240,133 + cbpA NOLOHH_21575 0.29 +0.3 4,240,277 + cbpA NOLOHH_21575 0.45 -1.0 4,240,287 + cbpA NOLOHH_21575 0.46 -0.4 4,240,287 + cbpA NOLOHH_21575 0.46 +0.3 4,240,481 + cbpA NOLOHH_21575 0.67 -2.0 4,240,668 + cbpA NOLOHH_21575 0.87 +0.0 4,240,669 - cbpA NOLOHH_21575 0.87 -0.7 4,240,810 + -2.2 4,240,813 + +2.2 4,240,813 + +0.2 4,241,079 + +0.6 4,241,079 + +0.6 4,241,461 + torD NOLOHH_21585 0.46 +1.6 4,241,462 - torD NOLOHH_21585 0.46 +0.0 4,241,462 - torD NOLOHH_21585 0.46 -0.8 4,241,507 + torD NOLOHH_21585 0.54 +1.3 4,241,524 + torD NOLOHH_21585 0.56 -1.4 4,241,524 + torD NOLOHH_21585 0.56 -2.0 4,241,587 + torD NOLOHH_21585 0.67 +0.6 4,241,605 - torD NOLOHH_21585 0.70 +0.6
Or see this region's nucleotide sequence