Experiment: K5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ldcA and nhaP2 are separated by 94 nucleotides nhaP2 and NOLOHH_20715 are separated by 133 nucleotides NOLOHH_20715 and dadX are separated by 103 nucleotides
NOLOHH_20705: ldcA - muramoyltetrapeptide carboxypeptidase, at 4,076,067 to 4,076,981
ldcA
NOLOHH_20710: nhaP2 - potassium/proton antiporter, at 4,077,076 to 4,078,812
nhaP2
NOLOHH_20715: NOLOHH_20715 - hypothetical protein, at 4,078,946 to 4,079,095
_20715
NOLOHH_20720: dadX - catabolic alanine racemase DadX, at 4,079,199 to 4,080,269
dadX
Position (kb)
4077
4078
4079 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4076.083 kb on + strand at 4076.109 kb on - strand at 4077.005 kb on + strand at 4077.028 kb on + strand at 4077.040 kb on + strand at 4077.040 kb on + strand at 4077.041 kb on - strand at 4077.043 kb on - strand at 4077.056 kb on + strand at 4077.144 kb on + strand at 4077.144 kb on + strand at 4077.266 kb on + strand, within nhaP2 at 4077.266 kb on + strand, within nhaP2 at 4077.270 kb on + strand, within nhaP2 at 4077.270 kb on + strand, within nhaP2 at 4077.694 kb on + strand, within nhaP2 at 4078.097 kb on + strand, within nhaP2 at 4078.383 kb on + strand, within nhaP2 at 4078.401 kb on + strand, within nhaP2 at 4078.613 kb on + strand, within nhaP2 at 4078.615 kb on + strand, within nhaP2 at 4078.615 kb on + strand, within nhaP2 at 4078.758 kb on + strand at 4078.981 kb on + strand, within NOLOHH_20715 at 4079.065 kb on + strand, within NOLOHH_20715 at 4079.124 kb on - strand at 4079.124 kb on - strand at 4079.191 kb on - strand at 4079.499 kb on - strand, within dadX at 4079.501 kb on - strand, within dadX at 4079.584 kb on - strand, within dadX at 4079.640 kb on - strand, within dadX
Per-strain Table
Position Strand Gene LocusTag Fraction K5 remove 4,076,083 + -0.4 4,076,109 - -0.4 4,077,005 + +0.6 4,077,028 + +0.6 4,077,040 + -0.4 4,077,040 + +0.6 4,077,041 - -1.9 4,077,043 - -0.4 4,077,056 + +0.6 4,077,144 + +1.4 4,077,144 + -0.1 4,077,266 + nhaP2 NOLOHH_20710 0.11 -0.9 4,077,266 + nhaP2 NOLOHH_20710 0.11 +2.6 4,077,270 + nhaP2 NOLOHH_20710 0.11 +0.6 4,077,270 + nhaP2 NOLOHH_20710 0.11 +0.1 4,077,694 + nhaP2 NOLOHH_20710 0.36 -0.9 4,078,097 + nhaP2 NOLOHH_20710 0.59 -0.9 4,078,383 + nhaP2 NOLOHH_20710 0.75 -0.9 4,078,401 + nhaP2 NOLOHH_20710 0.76 -1.7 4,078,613 + nhaP2 NOLOHH_20710 0.88 -0.9 4,078,615 + nhaP2 NOLOHH_20710 0.89 +1.6 4,078,615 + nhaP2 NOLOHH_20710 0.89 -0.7 4,078,758 + -0.1 4,078,981 + NOLOHH_20715 0.23 +2.6 4,079,065 + NOLOHH_20715 0.79 +1.1 4,079,124 - +2.6 4,079,124 - -0.2 4,079,191 - +1.6 4,079,499 - dadX NOLOHH_20720 0.28 -0.9 4,079,501 - dadX NOLOHH_20720 0.28 -0.9 4,079,584 - dadX NOLOHH_20720 0.36 +0.6 4,079,640 - dadX NOLOHH_20720 0.41 +0.6
Or see this region's nucleotide sequence